Wall clock time and date at job start Wed Apr 1 2020 03:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30872 * 125.87309 * 2 1 4 4 N 1.40086 * 108.21690 * 180.13694 * 3 2 1 5 5 C 1.40181 * 126.05683 * 179.88080 * 4 3 2 6 6 C 1.38845 * 120.06320 * 324.69146 * 5 4 3 7 7 C 1.38125 * 119.92894 * 179.97438 * 6 5 4 8 8 C 1.38273 * 120.06983 * 0.02562 * 7 6 5 9 9 C 1.38285 * 120.13300 * 359.97438 * 8 7 6 10 10 C 1.38118 * 120.06661 * 0.02562 * 9 8 7 11 11 C 1.35225 * 107.89307 * 359.61755 * 4 3 2 12 12 C 1.50696 * 126.14571 * 180.22261 * 11 4 3 13 13 C 1.35322 * 107.71276 * 0.22679 * 11 4 3 14 14 C 1.50696 * 126.03534 * 180.02562 * 13 11 4 15 15 N 1.46501 * 109.47369 * 89.99927 * 14 13 11 16 16 C 1.34771 * 119.99959 * 180.02562 * 15 14 13 17 17 O 1.21277 * 120.00150 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99777 * 180.02562 * 16 15 14 19 19 S 1.81006 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.76197 * 100.00127 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99894 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99980 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00051 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47299 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47355 * 120.00047 * 24 22 20 27 27 H 1.48501 * 109.47416 * 240.00239 * 24 22 20 28 28 H 1.09001 * 109.47122 * 270.27963 * 1 2 3 29 29 H 1.08993 * 109.47584 * 30.28019 * 1 2 3 30 30 H 1.08996 * 109.46874 * 150.28556 * 1 2 3 31 31 H 1.07998 * 120.03278 * 0.25553 * 6 5 4 32 32 H 1.08000 * 119.96142 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.93705 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.96284 * 180.02562 * 9 8 7 35 35 H 1.08000 * 120.03400 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.46988 * 90.02670 * 12 11 4 37 37 H 1.09010 * 109.47372 * 210.02610 * 12 11 4 38 38 H 1.09002 * 109.47388 * 330.02477 * 12 11 4 39 39 H 1.09009 * 109.47023 * 209.99935 * 14 13 11 40 40 H 1.09006 * 109.47109 * 329.99481 * 14 13 11 41 41 H 0.97004 * 119.99503 * 359.97438 * 15 14 13 42 42 H 1.08995 * 109.47152 * 299.99682 * 18 16 15 43 43 H 1.08998 * 109.47277 * 59.99571 * 18 16 15 44 44 H 0.96993 * 120.00175 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2740 1.0605 0.0000 4 7 3.6088 0.6356 -0.0032 5 6 4.7388 1.4652 -0.0066 6 6 4.7173 2.6669 -0.7018 7 6 5.8320 3.4825 -0.7028 8 6 6.9687 3.1031 -0.0129 9 6 6.9931 1.9068 0.6804 10 6 5.8816 1.0870 0.6852 11 6 3.6144 -0.7166 0.0035 12 6 4.8350 -1.6004 0.0078 13 6 2.3271 -1.1337 0.0056 14 6 1.8593 -2.5662 0.0132 15 7 1.7075 -3.0230 1.3969 16 6 1.2967 -4.2814 1.6498 17 8 1.0521 -5.0355 0.7319 18 6 1.1400 -4.7512 3.0731 19 16 0.5783 -6.4718 3.0823 20 6 0.4831 -6.7534 4.8190 21 1 0.7394 -5.9631 5.5090 22 6 0.0778 -7.9905 5.3003 23 7 -0.2351 -8.9536 4.4593 24 14 -0.0225 -8.2893 7.1415 25 1 0.3792 -7.0566 7.8656 26 1 -1.4158 -8.6474 7.5098 27 1 0.8890 -9.4012 7.5129 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3633 -0.8925 -0.5094 31 1 3.8283 2.9657 -1.2373 32 1 5.8160 4.4171 -1.2437 33 1 7.8393 3.7422 -0.0155 34 1 7.8822 1.6134 1.2186 35 1 5.9013 0.1527 1.2265 36 1 5.1291 -1.8088 1.0365 37 1 4.6075 -2.5368 -0.5019 38 1 5.6514 -1.0951 -0.5082 39 1 0.9005 -2.6380 -0.5004 40 1 2.5926 -3.1906 -0.4973 41 1 1.9035 -2.4200 2.1309 42 1 2.0984 -4.6788 3.5872 43 1 0.4062 -4.1270 3.5830 44 1 -0.5180 -9.8183 4.7956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193035879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:04 Heat of formation + Delta-G solvation = 61.330810 kcal Electronic energy + Delta-G solvation = -26140.986898 eV Core-core repulsion = 22379.030877 eV Total energy + Delta-G solvation = -3761.956022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.09338 -39.52545 -38.93891 -35.14306 -34.30934 -32.60464 -32.41206 -31.42172 -30.82622 -29.63753 -27.96445 -27.55781 -25.55683 -25.04043 -23.19807 -22.67780 -20.30493 -20.08651 -19.84523 -18.07536 -17.74280 -16.78859 -16.35115 -16.08816 -15.76200 -15.17419 -15.05513 -14.79451 -14.74382 -14.25084 -14.14097 -13.90194 -13.78625 -13.63918 -13.38841 -13.23686 -12.95998 -12.72729 -12.64544 -12.55064 -12.47095 -12.30136 -11.92225 -11.66282 -11.58264 -11.06165 -11.00185 -10.81455 -10.74125 -10.21366 -9.79115 -9.53822 -9.49941 -9.08397 -9.06285 -8.80362 -8.43507 -8.20360 -6.47622 -6.20368 -3.90332 0.44151 0.80221 1.64359 2.00892 2.25198 3.14974 3.15754 3.20595 3.22381 3.30281 3.38715 3.90387 4.11463 4.20128 4.21912 4.37677 4.41958 4.58711 4.62754 4.83380 4.90139 4.94006 4.98218 5.09018 5.13948 5.14860 5.21455 5.28613 5.40652 5.43450 5.50312 5.60210 5.66499 5.69886 5.81393 5.84199 5.89777 5.93443 5.96354 5.97330 6.17931 6.23455 6.36713 6.67778 6.83758 7.36231 7.61515 7.79843 8.37048 8.67341 9.25199 10.87096 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.001973 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.610784 B =14191.547138 C =14910.675400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.103 3.897 3 N -0.292 5.292 4 N -0.327 5.327 5 C 0.157 3.843 6 C -0.112 4.112 7 C -0.101 4.101 8 C -0.124 4.124 9 C -0.098 4.098 10 C -0.133 4.133 11 C 0.111 3.889 12 C -0.102 4.102 13 C -0.247 4.247 14 C 0.203 3.797 15 N -0.734 5.734 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.397 0.603 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.587 25.801 -10.402 30.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 N -0.111 5.111 4 N -0.102 5.102 5 C 0.065 3.935 6 C -0.132 4.132 7 C -0.120 4.120 8 C -0.142 4.142 9 C -0.117 4.117 10 C -0.153 4.153 11 C -0.014 4.014 12 C -0.160 4.160 13 C -0.258 4.258 14 C 0.078 3.922 15 N -0.388 5.388 16 C 0.318 3.682 17 O -0.394 6.394 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.231 0.769 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.204 25.666 -11.986 31.253 hybrid contribution 0.302 0.234 2.638 2.665 sum 13.506 25.901 -9.348 30.670 Atomic orbital electron populations 1.20278 0.85942 1.03717 1.03637 1.22432 0.97190 0.89914 0.96932 1.77498 0.85103 1.22151 1.26345 1.45632 1.04315 1.03405 1.56855 1.17469 0.84686 0.92116 0.99182 1.21032 0.99617 0.93530 0.98981 1.21095 0.92467 0.99468 0.98945 1.21281 0.98498 0.96840 0.97613 1.21045 0.97789 0.94028 0.98827 1.21162 0.92725 1.01684 0.99730 1.21043 0.97254 0.83728 0.99355 1.20720 0.92842 0.98525 1.03901 1.19784 0.91103 0.96261 1.18619 1.19341 1.01171 0.87737 0.83918 1.46145 1.70859 1.13845 1.07969 1.20288 0.75828 0.80887 0.91222 1.90701 1.48402 1.53872 1.46392 1.23530 1.05015 1.06626 0.95190 1.85384 1.86587 1.01738 1.09655 1.22912 1.52569 1.01176 0.91599 0.90917 1.24990 0.94644 0.95020 0.98980 1.70026 1.42400 1.03534 1.34325 0.86126 0.77942 0.78324 0.83154 1.19643 1.20581 1.20587 0.89925 0.90687 0.89769 0.84937 0.85064 0.85329 0.84878 0.84849 0.89462 0.88858 0.90553 0.90710 0.91074 0.76944 0.89366 0.89293 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.26 36.01 0.37 -0.33 16 2 C 0.10 1.18 7.22 -82.37 -0.59 0.59 16 3 N -0.29 -3.67 12.34 33.69 0.42 -3.26 16 4 N -0.33 -3.71 3.73 -6.98 -0.03 -3.73 16 5 C 0.16 1.53 6.28 -83.59 -0.52 1.00 16 6 C -0.11 -0.97 9.77 -39.40 -0.38 -1.35 16 7 C -0.10 -0.64 10.04 -39.61 -0.40 -1.04 16 8 C -0.12 -0.69 10.04 -39.55 -0.40 -1.09 16 9 C -0.10 -0.59 10.04 -39.61 -0.40 -0.98 16 10 C -0.13 -1.02 8.28 -39.40 -0.33 -1.35 16 11 C 0.11 1.17 6.76 -82.14 -0.56 0.62 16 12 C -0.10 -0.79 8.38 36.00 0.30 -0.49 16 13 C -0.25 -2.78 5.47 -105.03 -0.57 -3.35 16 14 C 0.20 2.48 5.75 -5.19 -0.03 2.45 16 15 N -0.73 -9.94 5.55 -61.47 -0.34 -10.28 16 16 C 0.53 9.80 7.85 -10.99 -0.09 9.71 16 17 O -0.52 -11.62 15.86 5.56 0.09 -11.53 16 18 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 24 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.72 7.25 -51.93 -0.38 0.34 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 34 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.13 0.90 6.09 -52.49 -0.32 0.58 16 36 H 0.09 0.59 7.74 -51.93 -0.40 0.19 16 37 H 0.09 0.71 7.15 -51.92 -0.37 0.34 16 38 H 0.08 0.51 6.89 -51.93 -0.36 0.15 16 39 H 0.07 0.95 7.26 -51.92 -0.38 0.57 16 40 H 0.07 0.88 7.15 -51.93 -0.37 0.51 16 41 H 0.40 4.60 8.46 -40.82 -0.35 4.26 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 388.34 15.07 5.85 5.85 Total: -1.00 -35.99 388.34 -9.54 -45.53 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.85 Total: 1.67 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -3.18 Total: -11.41 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.78 Total: -42.68 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.99 -9.54 -45.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193035879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.861 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds