Wall clock time and date at job start Wed Apr 1 2020 03:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30872 * 125.87309 * 2 1 4 4 N 1.40086 * 108.21690 * 180.13694 * 3 2 1 5 5 C 1.40181 * 126.05683 * 179.88080 * 4 3 2 6 6 C 1.38845 * 120.06320 * 324.69146 * 5 4 3 7 7 C 1.38125 * 119.92894 * 179.97438 * 6 5 4 8 8 C 1.38273 * 120.06983 * 0.02562 * 7 6 5 9 9 C 1.38285 * 120.13300 * 359.97438 * 8 7 6 10 10 C 1.38118 * 120.06661 * 0.02562 * 9 8 7 11 11 C 1.35225 * 107.89307 * 359.61755 * 4 3 2 12 12 C 1.50696 * 126.14571 * 180.22261 * 11 4 3 13 13 C 1.35322 * 107.71276 * 0.22679 * 11 4 3 14 14 C 1.50696 * 126.03534 * 180.02562 * 13 11 4 15 15 N 1.46501 * 109.47369 * 89.99927 * 14 13 11 16 16 C 1.34771 * 119.99959 * 180.02562 * 15 14 13 17 17 O 1.21277 * 120.00150 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99777 * 180.02562 * 16 15 14 19 19 S 1.81006 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.76197 * 100.00127 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99894 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99980 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00051 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47299 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47355 * 120.00047 * 24 22 20 27 27 H 1.48501 * 109.47416 * 240.00239 * 24 22 20 28 28 H 1.09001 * 109.47122 * 270.27963 * 1 2 3 29 29 H 1.08993 * 109.47584 * 30.28019 * 1 2 3 30 30 H 1.08996 * 109.46874 * 150.28556 * 1 2 3 31 31 H 1.07998 * 120.03278 * 0.25553 * 6 5 4 32 32 H 1.08000 * 119.96142 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.93705 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.96284 * 180.02562 * 9 8 7 35 35 H 1.08000 * 120.03400 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.46988 * 90.02670 * 12 11 4 37 37 H 1.09010 * 109.47372 * 210.02610 * 12 11 4 38 38 H 1.09002 * 109.47388 * 330.02477 * 12 11 4 39 39 H 1.09009 * 109.47023 * 209.99935 * 14 13 11 40 40 H 1.09006 * 109.47109 * 329.99481 * 14 13 11 41 41 H 0.97004 * 119.99503 * 359.97438 * 15 14 13 42 42 H 1.08995 * 109.47152 * 299.99682 * 18 16 15 43 43 H 1.08998 * 109.47277 * 59.99571 * 18 16 15 44 44 H 0.96993 * 120.00175 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2740 1.0605 0.0000 4 7 3.6088 0.6356 -0.0032 5 6 4.7388 1.4652 -0.0066 6 6 4.7173 2.6669 -0.7018 7 6 5.8320 3.4825 -0.7028 8 6 6.9687 3.1031 -0.0129 9 6 6.9931 1.9068 0.6804 10 6 5.8816 1.0870 0.6852 11 6 3.6144 -0.7166 0.0035 12 6 4.8350 -1.6004 0.0078 13 6 2.3271 -1.1337 0.0056 14 6 1.8593 -2.5662 0.0132 15 7 1.7075 -3.0230 1.3969 16 6 1.2967 -4.2814 1.6498 17 8 1.0521 -5.0355 0.7319 18 6 1.1400 -4.7512 3.0731 19 16 0.5783 -6.4718 3.0823 20 6 0.4831 -6.7534 4.8190 21 1 0.7394 -5.9631 5.5090 22 6 0.0778 -7.9905 5.3003 23 7 -0.2351 -8.9536 4.4593 24 14 -0.0225 -8.2893 7.1415 25 1 0.3792 -7.0566 7.8656 26 1 -1.4158 -8.6474 7.5098 27 1 0.8890 -9.4012 7.5129 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3633 -0.8925 -0.5094 31 1 3.8283 2.9657 -1.2373 32 1 5.8160 4.4171 -1.2437 33 1 7.8393 3.7422 -0.0155 34 1 7.8822 1.6134 1.2186 35 1 5.9013 0.1527 1.2265 36 1 5.1291 -1.8088 1.0365 37 1 4.6075 -2.5368 -0.5019 38 1 5.6514 -1.0951 -0.5082 39 1 0.9005 -2.6380 -0.5004 40 1 2.5926 -3.1906 -0.4973 41 1 1.9035 -2.4200 2.1309 42 1 2.0984 -4.6788 3.5872 43 1 0.4062 -4.1270 3.5830 44 1 -0.5180 -9.8183 4.7956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193035879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:03 Heat of formation + Delta-G solvation = 38.797533 kcal Electronic energy + Delta-G solvation = -26141.964015 eV Core-core repulsion = 22379.030877 eV Total energy + Delta-G solvation = -3762.933138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.89231 -40.51058 -39.96505 -36.22221 -35.15514 -34.56613 -33.49139 -31.99268 -31.63823 -30.86523 -28.93649 -28.28457 -27.64940 -26.05801 -23.73917 -23.32437 -21.72553 -20.82493 -20.71194 -19.78942 -18.69962 -17.77181 -17.40173 -17.12383 -16.86378 -16.72634 -16.52610 -15.84590 -15.60866 -15.37500 -15.13391 -14.80681 -14.65841 -14.48610 -14.37647 -14.36631 -14.03612 -13.82576 -13.74936 -13.28624 -13.23410 -13.13694 -13.11763 -12.96196 -12.88770 -12.58934 -12.45491 -12.12878 -11.70912 -11.62638 -11.14220 -11.07433 -10.82868 -10.24321 -10.07127 -10.05045 -9.91422 -9.18234 -8.63304 -8.33035 -6.10138 -0.17755 0.29055 0.90714 1.23086 1.29977 1.38547 1.42126 1.52405 1.64553 1.67404 2.28570 2.52858 2.67676 3.01012 3.35837 3.38509 3.49988 3.81079 3.86650 3.90705 4.04002 4.06799 4.16442 4.21608 4.33762 4.38995 4.40775 4.47591 4.51687 4.55040 4.61999 4.67496 4.78904 4.89188 4.94609 4.97723 5.01771 5.06556 5.29230 5.33845 5.43989 5.44768 5.46685 5.57159 5.75083 6.14485 6.21986 6.53732 6.55797 7.08570 7.28166 8.76314 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.001973 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.610784 B =14191.547138 C =14910.675400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.096 3.904 3 N -0.322 5.322 4 N -0.328 5.328 5 C 0.123 3.877 6 C -0.129 4.129 7 C -0.102 4.102 8 C -0.118 4.118 9 C -0.097 4.097 10 C -0.138 4.138 11 C 0.115 3.885 12 C -0.101 4.101 13 C -0.261 4.261 14 C 0.210 3.790 15 N -0.707 5.707 16 C 0.537 3.463 17 O -0.564 6.564 18 C -0.130 4.130 19 S -0.147 6.147 20 C -0.545 4.545 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.910 5.910 24 Si 0.998 3.002 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.410 0.590 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.713 27.796 -8.942 33.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 N -0.142 5.142 4 N -0.103 5.103 5 C 0.033 3.967 6 C -0.149 4.149 7 C -0.121 4.121 8 C -0.136 4.136 9 C -0.116 4.116 10 C -0.158 4.158 11 C -0.011 4.011 12 C -0.159 4.159 13 C -0.272 4.272 14 C 0.086 3.914 15 N -0.360 5.360 16 C 0.323 3.677 17 O -0.442 6.442 18 C -0.281 4.281 19 S 0.080 5.920 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.137 0.863 32 H 0.170 0.830 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.158 0.842 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.246 0.754 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.353 27.734 -10.525 33.402 hybrid contribution -0.222 -0.182 2.097 2.116 sum 15.131 27.552 -8.429 32.544 Atomic orbital electron populations 1.20340 0.84749 1.04254 1.04122 1.22771 0.98105 0.89783 0.96461 1.77445 0.86069 1.23042 1.27616 1.45797 1.04334 1.03857 1.56333 1.17840 0.84958 0.92818 1.01101 1.21103 1.00205 0.94002 0.99601 1.21390 0.91948 0.99835 0.98891 1.21686 0.98933 0.96868 0.96121 1.21427 0.97989 0.93714 0.98424 1.21345 0.92551 1.02353 0.99539 1.21459 0.97926 0.83882 0.97838 1.20825 0.92075 0.98027 1.04940 1.19640 0.91586 0.95421 1.20593 1.19307 1.01100 0.88408 0.82605 1.45908 1.68627 1.12143 1.09340 1.19977 0.75885 0.81915 0.89919 1.90693 1.50844 1.55464 1.47214 1.23374 1.06100 1.01613 0.97010 1.85543 1.87586 1.08314 1.10560 1.23236 1.52572 1.01782 0.91727 0.90042 1.26109 0.93926 0.94624 1.04525 1.70183 1.43440 1.04164 1.36919 0.84923 0.78126 0.78688 0.76311 1.18137 1.19991 1.19895 0.89370 0.89953 0.89431 0.86279 0.82966 0.82391 0.82211 0.84157 0.88080 0.88774 0.89345 0.91076 0.91008 0.75386 0.87355 0.87507 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.26 71.24 0.73 -0.63 16 2 C 0.10 2.19 7.22 43.11 0.31 2.50 16 3 N -0.32 -8.18 12.34 -47.33 -0.58 -8.77 16 4 N -0.33 -7.37 3.73 -176.00 -0.66 -8.02 16 5 C 0.12 2.33 6.28 38.09 0.24 2.57 16 6 C -0.13 -2.20 9.77 22.39 0.22 -1.99 16 7 C -0.10 -1.11 10.04 22.25 0.22 -0.89 16 8 C -0.12 -0.95 10.04 22.29 0.22 -0.72 16 9 C -0.10 -0.87 10.04 22.25 0.22 -0.65 16 10 C -0.14 -1.88 8.28 22.38 0.19 -1.69 16 11 C 0.12 2.34 6.76 41.36 0.28 2.62 16 12 C -0.10 -1.41 8.38 71.23 0.60 -0.81 16 13 C -0.26 -5.75 5.47 -20.13 -0.11 -5.86 16 14 C 0.21 5.00 5.75 85.63 0.49 5.50 16 15 N -0.71 -18.28 5.55 -466.78 -2.59 -20.87 16 16 C 0.54 19.52 7.85 87.66 0.69 20.21 16 17 O -0.56 -25.62 15.86 -3.02 -0.05 -25.67 16 18 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 19 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 20 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 22 C 0.01 0.73 5.49 84.86 0.47 1.20 16 23 N -0.91 -55.83 13.22 21.65 0.29 -55.55 16 24 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.47 7.25 -2.39 -0.02 1.46 16 31 H 0.12 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 33 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 34 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 35 H 0.14 1.61 6.09 -2.91 -0.02 1.60 16 36 H 0.10 1.14 7.74 -2.39 -0.02 1.13 16 37 H 0.09 1.32 7.15 -2.38 -0.02 1.30 16 38 H 0.09 1.02 6.89 -2.39 -0.02 1.01 16 39 H 0.07 1.79 7.26 -2.38 -0.02 1.77 16 40 H 0.07 1.74 7.15 -2.38 -0.02 1.73 16 41 H 0.41 8.71 8.46 -92.71 -0.78 7.92 16 42 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 43 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -80.22 388.34 3.37 -76.84 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.25 Total: 19.44 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 5.85 Total: -13.76 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -3.55 Total: -93.21 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -80.22 3.37 -76.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193035879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.641 kcal (2) G-P(sol) polarization free energy of solvation -80.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds