Wall clock time and date at job start Wed Apr 1 2020 03:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31376 * 119.66467 * 2 1 4 4 C 1.33739 * 119.73657 * 180.02562 * 3 2 1 5 5 C 1.40661 * 120.95896 * 180.02562 * 4 3 2 6 6 C 1.36375 * 120.16178 * 179.97438 * 5 4 3 7 7 F 1.35097 * 119.46019 * 179.97438 * 6 5 4 8 8 C 1.39302 * 121.08386 * 359.97434 * 6 5 4 9 9 C 1.38576 * 120.60903 * 0.02562 * 8 6 5 10 10 C 1.47527 * 120.32454 * 180.02562 * 9 8 6 11 11 O 1.21588 * 120.00523 * 155.31307 * 10 9 8 12 12 N 1.34781 * 119.99623 * 335.31476 * 10 9 8 13 13 C 1.47584 * 134.48997 * 174.65565 * 12 10 9 14 14 C 1.53946 * 86.11716 * 155.35528 * 13 12 10 15 15 O 1.42893 * 113.74023 * 269.15568 * 14 13 12 16 16 C 1.50697 * 113.73891 * 137.95062 * 14 13 12 17 17 H 1.07998 * 120.00292 * 1.92598 * 16 14 13 18 18 C 1.37878 * 119.99851 * 182.20284 * 16 14 13 19 19 N 1.31519 * 120.00042 * 359.72345 * 18 16 14 20 20 Si 1.86803 * 120.00181 * 179.72688 * 18 16 14 21 21 H 1.48502 * 109.47271 * 89.99528 * 20 18 16 22 22 H 1.48494 * 109.47230 * 209.99874 * 20 18 16 23 23 H 1.48506 * 109.46717 * 329.99789 * 20 18 16 24 24 C 1.47808 * 134.46014 * 354.51761 * 12 10 9 25 25 C 1.41650 * 119.51979 * 0.27031 * 4 3 2 26 26 N 1.33445 * 119.68025 * 359.46000 * 25 4 3 27 27 C 1.31479 * 119.73598 * 0.52441 * 26 25 4 28 28 C 1.50696 * 119.67561 * 179.72790 * 27 26 25 29 29 H 1.08998 * 109.47394 * 90.00013 * 1 2 3 30 30 H 1.09004 * 109.47220 * 210.00462 * 1 2 3 31 31 H 1.09002 * 109.47413 * 330.00046 * 1 2 3 32 32 H 1.08005 * 119.91457 * 359.94995 * 5 4 3 33 33 H 1.08003 * 119.69128 * 180.02562 * 8 6 5 34 34 H 1.09004 * 113.76844 * 41.05451 * 13 12 10 35 35 H 1.08996 * 113.87047 * 269.67270 * 13 12 10 36 36 H 0.96702 * 113.99851 * 178.07653 * 15 14 13 37 37 H 0.96994 * 119.99781 * 180.02562 * 19 18 16 38 38 H 1.09004 * 113.76453 * 90.37938 * 24 12 10 39 39 H 1.09000 * 113.84029 * 318.92066 * 24 12 10 40 40 H 1.08995 * 109.46968 * 270.01599 * 28 27 26 41 41 H 1.08994 * 109.47362 * 30.01535 * 28 27 26 42 42 H 1.09003 * 109.47070 * 150.01735 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1571 1.1416 0.0000 4 6 3.4945 1.1433 -0.0005 5 6 4.2166 2.3504 0.0000 6 6 5.5803 2.3331 0.0000 7 9 6.2595 3.5009 0.0000 8 6 6.2843 1.1311 0.0000 9 6 5.6118 -0.0805 -0.0005 10 6 6.3637 -1.3498 0.0001 11 8 5.8502 -2.3605 0.4394 12 7 7.6200 -1.3889 -0.4865 13 6 8.6721 -2.4219 -0.5518 14 6 9.2186 -1.6399 -1.7600 15 8 8.6875 -2.0734 -3.0138 16 6 10.7201 -1.5115 -1.7708 17 1 11.3074 -1.9759 -0.9925 18 6 11.3436 -0.7963 -2.7711 19 7 10.6284 -0.2308 -3.7190 20 14 13.2043 -0.6306 -2.7803 21 1 13.7973 -1.7515 -3.5530 22 1 13.5832 0.6597 -3.4098 23 1 13.7114 -0.6685 -1.3850 24 6 8.4959 -0.4149 -1.1711 25 6 4.1940 -0.0885 -0.0069 26 7 3.5122 -1.2356 -0.0013 27 6 2.1976 -1.2129 -0.0005 28 6 1.4290 -2.5091 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.6897 3.2932 0.0000 33 1 7.3643 1.1437 0.0004 34 1 8.2983 -3.4144 -0.8034 35 1 9.3412 -2.4250 0.3086 36 1 9.0059 -1.5655 -3.7725 37 1 11.0672 0.2720 -4.4229 38 1 9.1123 0.1745 -0.4922 39 1 7.9818 0.1922 -1.9163 40 1 1.2433 -2.8214 -1.0281 41 1 2.0094 -3.2756 0.5129 42 1 0.4784 -2.3678 0.5138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193979502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:38 Heat of formation + Delta-G solvation = -16.469985 kcal Electronic energy + Delta-G solvation = -29998.367807 eV Core-core repulsion = 25666.824914 eV Total energy + Delta-G solvation = -4331.542893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.13875 -41.69199 -39.64843 -37.81477 -36.98301 -35.04600 -34.04048 -33.15118 -32.25729 -31.41814 -28.99589 -28.22995 -27.98985 -25.56026 -25.41823 -23.77574 -23.26732 -22.95063 -20.32793 -19.19216 -18.59138 -18.01366 -17.36372 -17.15630 -16.28919 -16.16296 -15.93109 -15.44226 -15.39880 -14.99960 -14.68658 -14.52265 -14.41269 -14.07397 -13.58422 -13.34109 -13.30378 -13.20588 -13.03450 -12.88703 -12.54900 -12.43054 -12.08856 -12.02866 -11.84518 -11.60115 -11.55729 -11.40422 -11.21451 -11.10486 -11.08779 -10.54386 -10.33570 -9.81527 -9.39378 -9.04088 -8.91148 -8.79445 -8.64327 -8.45592 -7.88088 -6.42394 -4.53133 -0.18567 0.29955 1.55640 2.30033 3.13280 3.20965 3.22752 3.28988 3.33566 3.53806 3.82367 3.88544 4.05508 4.09019 4.16345 4.43043 4.52227 4.69849 4.80935 4.83172 4.90976 5.07656 5.20321 5.30464 5.40133 5.42173 5.51441 5.56999 5.60429 5.69823 5.70093 5.77553 5.91724 6.08680 6.14509 6.32760 6.38708 6.41346 6.56683 6.62326 7.03723 7.15378 7.59700 7.64423 7.77756 8.35409 8.50501 8.67521 9.18259 9.38912 10.64297 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.003160 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.644850 B = 8859.791022 C = 9995.306457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.113 3.887 3 N -0.428 5.428 4 C 0.097 3.903 5 C -0.113 4.113 6 C 0.124 3.876 7 F -0.125 7.125 8 C -0.103 4.103 9 C -0.046 4.046 10 C 0.569 3.431 11 O -0.521 6.521 12 N -0.628 5.628 13 C 0.116 3.884 14 C 0.241 3.759 15 O -0.571 6.571 16 C -0.538 4.538 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.907 3.093 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.271 1.271 24 C 0.070 3.930 25 C 0.102 3.898 26 N -0.383 5.383 27 C 0.102 3.898 28 C -0.105 4.105 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.392 0.608 37 H 0.273 0.727 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.909 4.214 6.204 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.043 4.043 3 N -0.143 5.143 4 C -0.027 4.027 5 C -0.134 4.134 6 C 0.103 3.897 7 F -0.104 7.104 8 C -0.124 4.124 9 C -0.051 4.051 10 C 0.357 3.643 11 O -0.398 6.398 12 N -0.362 5.362 13 C -0.006 4.006 14 C 0.199 3.801 15 O -0.383 6.383 16 C -0.576 4.576 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.734 3.266 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.195 1.195 24 C -0.053 4.053 25 C -0.024 4.024 26 N -0.096 5.096 27 C -0.054 4.054 28 C -0.163 4.163 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.246 0.754 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.421 3.505 6.719 18.085 hybrid contribution 1.495 1.143 -0.473 1.940 sum -14.926 4.648 6.246 16.835 Atomic orbital electron populations 1.20846 0.87292 1.04262 1.03871 1.22456 0.98477 0.88889 0.94485 1.68487 1.06534 1.28763 1.10549 1.18986 0.90397 0.92863 1.00458 1.20664 0.91888 0.98448 1.02367 1.17087 0.89483 0.81582 1.01532 1.91569 1.79909 1.45349 1.93550 1.21830 1.02545 0.89879 0.98162 1.19844 0.91033 0.94277 0.99900 1.17336 0.80819 0.87151 0.79002 1.90779 1.67831 1.34116 1.47087 1.50163 1.10858 1.18428 1.56737 1.23479 0.85398 0.93433 0.98243 1.19819 0.91003 0.87181 0.82065 1.86075 1.72406 1.62364 1.17431 1.21484 0.90755 1.33875 1.11508 0.90960 1.25074 0.99528 0.93745 0.94677 1.69404 1.36282 1.34357 1.13614 0.86339 0.83918 0.77712 0.78608 1.20252 1.20930 1.19547 1.24501 0.89701 0.96579 0.94499 1.19281 0.93609 0.89470 1.00030 1.68777 1.06916 1.27417 1.06507 1.22578 0.90672 0.96733 0.95428 1.20837 0.99005 0.92596 1.03862 0.89491 0.89499 0.89959 0.82815 0.82186 0.90853 0.89306 0.75364 0.91644 0.89673 0.91039 0.89560 0.89525 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 9.76 36.00 0.35 -0.37 16 2 C 0.11 1.35 6.79 -82.29 -0.56 0.79 16 3 N -0.43 -5.97 10.37 -7.09 -0.07 -6.04 16 4 C 0.10 1.49 6.59 -84.82 -0.56 0.93 16 5 C -0.11 -1.51 9.92 -39.34 -0.39 -1.90 16 6 C 0.12 1.74 7.22 -39.86 -0.29 1.45 16 7 F -0.13 -1.68 17.24 2.25 0.04 -1.65 16 8 C -0.10 -1.62 8.79 -39.06 -0.34 -1.96 16 9 C -0.05 -0.84 5.85 -104.63 -0.61 -1.45 16 10 C 0.57 12.10 7.76 -12.47 -0.10 12.00 16 11 O -0.52 -12.34 16.33 5.29 0.09 -12.25 16 12 N -0.63 -13.21 3.58 -179.33 -0.64 -13.85 16 13 C 0.12 2.47 8.23 -2.96 -0.02 2.45 16 14 C 0.24 5.64 1.40 -90.85 -0.13 5.51 16 15 O -0.57 -14.54 13.49 -35.23 -0.48 -15.01 16 16 C -0.54 -13.11 8.61 -34.44 -0.30 -13.40 16 17 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 19 N -0.90 -22.24 11.21 55.43 0.62 -21.62 16 20 Si 0.91 19.10 29.54 -169.99 -5.02 14.08 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C 0.07 1.45 5.68 -2.84 -0.02 1.43 16 25 C 0.10 1.81 6.58 -84.51 -0.56 1.25 16 26 N -0.38 -6.82 8.76 -6.85 -0.06 -6.88 16 27 C 0.10 1.37 6.79 -82.25 -0.56 0.81 16 28 C -0.11 -0.97 9.77 36.00 0.35 -0.62 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.40 5.91 -51.93 -0.31 0.09 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.16 2.43 5.51 -52.48 -0.29 2.15 16 34 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.09 1.71 8.09 -51.93 -0.42 1.29 16 36 H 0.39 10.04 6.61 45.56 0.30 10.34 16 37 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 38 H 0.09 1.64 7.71 -51.93 -0.40 1.24 16 39 H 0.07 1.50 7.86 -51.93 -0.41 1.10 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.08 0.48 5.91 -51.93 -0.31 0.17 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -30.49 359.47 -7.84 -38.33 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -3.91 Total: 10.88 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -3.82 Total: 8.59 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.15 Total: -48.39 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.39 Total: -27.27 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.49 -7.84 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193979502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.860 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds