Wall clock time and date at job start Wed Apr 1 2020 03:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38118 * 120.02258 * 2 1 4 4 C 1.38463 * 120.04232 * 180.02562 * 3 2 1 5 5 F 1.35103 * 119.95846 * 179.97438 * 4 3 2 6 6 C 1.38510 * 120.09059 * 0.02562 * 4 3 2 7 7 C 1.38079 * 120.03956 * 359.70159 * 6 4 3 8 8 C 1.38825 * 120.02262 * 180.02562 * 2 1 3 9 9 N 1.40167 * 120.04538 * 359.95614 * 8 2 1 10 10 C 1.35841 * 124.95978 * 132.40357 * 9 8 2 11 11 C 1.35367 * 107.12833 * 179.78743 * 10 9 8 12 12 C 1.41520 * 105.55268 * 0.38427 * 11 10 9 13 13 C 1.47665 * 126.44260 * 179.87859 * 12 11 10 14 14 O 1.21583 * 119.99808 * 359.70704 * 13 12 11 15 15 N 1.34777 * 120.00003 * 179.71339 * 13 12 11 16 16 C 1.47581 * 134.49092 * 179.97438 * 15 13 12 17 17 C 1.53940 * 86.11460 * 155.35445 * 16 15 13 18 18 O 1.42899 * 113.74707 * 269.15245 * 17 16 15 19 19 C 1.50706 * 113.74038 * 137.95508 * 17 16 15 20 20 H 1.08002 * 119.99945 * 1.92193 * 19 17 16 21 21 C 1.37870 * 120.00163 * 181.92586 * 19 17 16 22 22 N 1.31514 * 120.00056 * 359.97438 * 21 19 17 23 23 Si 1.86794 * 120.00162 * 179.97438 * 21 19 17 24 24 H 1.48510 * 109.47308 * 269.99693 * 23 21 19 25 25 H 1.48496 * 109.47234 * 29.99609 * 23 21 19 26 26 H 1.48500 * 109.47470 * 150.00062 * 23 21 19 27 27 C 1.47811 * 134.45761 * 359.86267 * 15 13 12 28 28 N 1.28477 * 124.95532 * 312.45265 * 9 8 2 29 29 H 1.08998 * 109.47060 * 264.61750 * 1 2 3 30 30 H 1.09000 * 109.46818 * 24.61717 * 1 2 3 31 31 H 1.08994 * 109.47044 * 144.61623 * 1 2 3 32 32 H 1.07999 * 119.97442 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.98307 * 179.97438 * 6 4 3 34 34 H 1.08005 * 120.01834 * 180.29600 * 7 6 4 35 35 H 1.08005 * 126.43704 * 0.02562 * 10 9 8 36 36 H 1.07993 * 127.22116 * 180.25614 * 11 10 9 37 37 H 1.09002 * 113.76379 * 41.05363 * 16 15 13 38 38 H 1.08996 * 113.87208 * 269.67317 * 16 15 13 39 39 H 0.96698 * 114.00674 * 178.07914 * 18 17 16 40 40 H 0.97007 * 120.00509 * 180.02562 * 22 21 19 41 41 H 1.08996 * 113.76609 * 90.38321 * 27 15 13 42 42 H 1.08997 * 113.83487 * 318.91854 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1959 0.0000 4 6 3.5827 1.1963 -0.0005 5 9 4.2570 2.3671 -0.0011 6 6 4.2776 -0.0019 -0.0016 7 6 3.5904 -1.1995 0.0041 8 6 2.2016 -1.2020 -0.0005 9 7 1.5023 -2.4167 -0.0002 10 6 1.7639 -3.4658 -0.8225 11 6 0.8820 -4.4449 -0.5126 12 6 0.0803 -3.9181 0.5279 13 6 -1.0343 -4.6055 1.2102 14 8 -1.3420 -5.7358 0.8844 15 7 -1.7106 -3.9800 2.1940 16 6 -2.8424 -4.3479 3.0667 17 6 -2.2828 -3.3081 4.0544 18 8 -1.3548 -3.8502 4.9962 19 6 -3.3424 -2.4526 4.6997 20 1 -4.3850 -2.6232 4.4751 21 6 -2.9810 -1.4521 5.5767 22 7 -1.7115 -1.2446 5.8505 23 14 -4.2943 -0.3912 6.3760 24 1 -4.5603 0.7945 5.5222 25 1 -5.5426 -1.1806 6.5295 26 1 -3.8241 0.0563 7.7117 27 6 -1.6145 -2.6507 2.8331 28 7 0.5195 -2.7000 0.7774 29 1 -0.3633 -0.0964 1.0231 30 1 -0.3633 0.9343 -0.4281 31 1 -0.3633 -0.8378 -0.5950 32 1 1.6581 2.1311 -0.0004 33 1 5.3576 0.0005 -0.0024 34 1 4.1325 -2.1335 0.0081 35 1 2.5338 -3.5117 -1.5786 36 1 0.8049 -5.4220 -0.9659 37 1 -2.7977 -5.3727 3.4355 38 1 -3.8181 -4.0852 2.6580 39 1 -0.9787 -3.1949 5.5997 40 1 -1.4571 -0.5408 6.4679 41 1 -2.2281 -1.8877 2.3542 42 1 -0.5912 -2.3227 3.0157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193981117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:33 Heat of formation + Delta-G solvation = 24.783179 kcal Electronic energy + Delta-G solvation = -29923.118849 eV Core-core repulsion = 25593.364827 eV Total energy + Delta-G solvation = -4329.754022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.25952 -42.82568 -39.58911 -39.12856 -37.15969 -33.89344 -33.59241 -33.11131 -32.17938 -30.75601 -29.72219 -28.45951 -27.24570 -25.52605 -25.16144 -23.89679 -22.92698 -21.62610 -21.14539 -19.82336 -18.56706 -18.08860 -17.52137 -17.37396 -17.13800 -16.31945 -15.98711 -15.57184 -15.44757 -15.00888 -14.73429 -14.45207 -14.18918 -14.07980 -13.76010 -13.62663 -13.48105 -13.43004 -13.09840 -12.94941 -12.53295 -12.24510 -12.17927 -12.07785 -11.93566 -11.52377 -11.49415 -11.08566 -11.02808 -10.67827 -10.47780 -10.23329 -9.81407 -9.72163 -9.36339 -9.23903 -9.18450 -8.73879 -8.54119 -8.34969 -7.77629 -6.35206 -4.45389 0.43324 0.74098 1.84911 2.22432 2.33366 3.05178 3.15902 3.24345 3.27718 3.57453 3.79943 3.89440 4.21212 4.22945 4.29736 4.58949 4.64874 4.69864 4.86013 4.91617 5.10431 5.25118 5.33192 5.38819 5.59093 5.60622 5.63033 5.66372 5.71457 5.79804 5.97416 6.04965 6.07584 6.20163 6.28990 6.41803 6.45720 6.62631 6.73620 6.83956 6.95400 7.16114 7.66522 7.86743 7.95522 8.47386 8.57352 8.79707 9.25441 9.47636 10.71418 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009483 B = 0.003783 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.061067 B = 7398.961879 C = 9664.400891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.026 4.026 3 C -0.143 4.143 4 C 0.113 3.887 5 F -0.134 7.134 6 C -0.147 4.147 7 C -0.077 4.077 8 C 0.117 3.883 9 N -0.245 5.245 10 C -0.022 4.022 11 C -0.173 4.173 12 C 0.006 3.994 13 C 0.611 3.389 14 O -0.558 6.558 15 N -0.617 5.617 16 C 0.113 3.887 17 C 0.236 3.764 18 O -0.572 6.572 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.905 3.095 24 H -0.278 1.278 25 H -0.271 1.271 26 H -0.284 1.284 27 C 0.092 3.908 28 N -0.236 5.236 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.181 0.819 36 H 0.165 0.835 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.391 0.609 40 H 0.272 0.728 41 H 0.078 0.922 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.081 5.487 -13.534 18.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.028 4.028 3 C -0.162 4.162 4 C 0.093 3.907 5 F -0.113 7.113 6 C -0.167 4.167 7 C -0.097 4.097 8 C 0.027 3.973 9 N -0.028 5.028 10 C -0.161 4.161 11 C -0.201 4.201 12 C -0.156 4.156 13 C 0.398 3.602 14 O -0.437 6.437 15 N -0.349 5.349 16 C -0.008 4.008 17 C 0.194 3.806 18 O -0.384 6.384 19 C -0.575 4.575 20 H 0.089 0.911 21 C -0.129 4.129 22 N -0.536 5.536 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.195 1.195 26 H -0.210 1.210 27 C -0.030 4.030 28 N -0.069 5.069 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.198 0.802 36 H 0.183 0.817 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.246 0.754 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.871 5.393 -13.354 18.044 hybrid contribution 0.022 0.747 0.121 0.757 sum 10.893 6.140 -13.233 18.206 Atomic orbital electron populations 1.20888 0.88825 1.02868 1.04744 1.19748 0.97587 0.90254 0.95181 1.20969 0.92160 0.99035 1.04073 1.17739 0.90071 0.81433 1.01424 1.91529 1.80238 1.45856 1.93642 1.20936 1.01176 0.90215 1.04355 1.20867 0.91346 0.99079 0.98411 1.17348 0.90279 0.82638 1.07070 1.42660 1.23758 1.10974 1.25448 1.23005 1.04510 0.88168 1.00421 1.21797 0.97163 1.01028 1.00071 1.22220 1.00767 0.91996 1.00583 1.16490 0.80768 0.84742 0.78174 1.90730 1.68973 1.18303 1.65682 1.50088 1.32777 1.19079 1.32958 1.23495 0.89036 1.00835 0.87471 1.19890 0.87182 0.88230 0.85294 1.86055 1.61884 1.40794 1.49673 1.21494 0.93540 1.15554 1.26879 0.91085 1.25047 0.95828 0.96626 0.95433 1.69416 1.15519 1.33073 1.35635 0.86373 0.81516 0.80203 0.78662 1.20370 1.19543 1.20956 1.24296 1.01784 0.84127 0.92832 1.73953 1.01723 1.16870 1.14321 0.88617 0.90954 0.91139 0.83495 0.83593 0.83890 0.80159 0.81747 0.90967 0.89431 0.75420 0.91776 0.90399 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 8.82 36.01 0.32 -1.09 16 2 C -0.03 -0.30 5.89 -104.45 -0.62 -0.91 16 3 C -0.14 -1.42 9.65 -39.54 -0.38 -1.80 16 4 C 0.11 1.09 7.30 -39.40 -0.29 0.80 16 5 F -0.13 -1.35 17.27 2.25 0.04 -1.31 16 6 C -0.15 -1.24 10.02 -39.54 -0.40 -1.63 16 7 C -0.08 -0.71 9.61 -39.41 -0.38 -1.09 16 8 C 0.12 1.39 6.12 -83.59 -0.51 0.88 16 9 N -0.25 -3.43 2.94 -10.54 -0.03 -3.46 16 10 C -0.02 -0.26 11.09 -16.80 -0.19 -0.45 16 11 C -0.17 -2.54 10.80 -39.36 -0.42 -2.97 16 12 C 0.01 0.12 7.08 -82.75 -0.59 -0.47 16 13 C 0.61 13.34 8.05 -12.41 -0.10 13.24 16 14 O -0.56 -13.23 17.65 5.29 0.09 -13.13 16 15 N -0.62 -13.69 3.61 -179.31 -0.65 -14.34 16 16 C 0.11 2.51 8.23 -2.97 -0.02 2.49 16 17 C 0.24 5.73 1.40 -90.84 -0.13 5.60 16 18 O -0.57 -15.00 13.49 -35.23 -0.48 -15.47 16 19 C -0.54 -13.48 8.61 -34.44 -0.30 -13.78 16 20 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 21 C 0.07 1.83 5.39 -17.82 -0.10 1.73 16 22 N -0.90 -22.81 11.20 55.43 0.62 -22.19 16 23 Si 0.91 19.45 29.54 -169.99 -5.02 14.43 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.09 2.06 7.31 -2.83 -0.02 2.04 16 28 N -0.24 -4.11 8.59 33.42 0.29 -3.83 16 29 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 31 H 0.07 0.94 7.20 -51.93 -0.37 0.56 16 32 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.14 1.04 8.01 -52.48 -0.42 0.62 16 35 H 0.18 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.17 2.15 8.06 -52.49 -0.42 1.72 16 37 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 39 H 0.39 10.33 6.60 45.56 0.30 10.64 16 40 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 42 H 0.08 1.78 7.51 -51.93 -0.39 1.39 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -30.21 369.15 -7.91 -38.12 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -4.22 Total: 13.02 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -4.12 Total: 2.59 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.23 Total: -43.80 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.38 Total: -28.61 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.21 -7.91 -38.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193981117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.903 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds