Wall clock time and date at job start Wed Apr 1 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38118 * 120.02258 * 2 1 4 4 C 1.38463 * 120.04232 * 180.02562 * 3 2 1 5 5 F 1.35103 * 119.95846 * 179.97438 * 4 3 2 6 6 C 1.38510 * 120.09059 * 0.02562 * 4 3 2 7 7 C 1.38079 * 120.03956 * 359.70159 * 6 4 3 8 8 C 1.38825 * 120.02262 * 180.02562 * 2 1 3 9 9 N 1.40167 * 120.04538 * 359.95614 * 8 2 1 10 10 C 1.35841 * 124.95978 * 132.40357 * 9 8 2 11 11 C 1.35367 * 107.12833 * 179.78743 * 10 9 8 12 12 C 1.41520 * 105.55268 * 0.38427 * 11 10 9 13 13 C 1.47665 * 126.44260 * 179.87859 * 12 11 10 14 14 O 1.21583 * 119.99808 * 359.70704 * 13 12 11 15 15 N 1.34777 * 120.00003 * 179.71339 * 13 12 11 16 16 C 1.47581 * 134.49092 * 179.97438 * 15 13 12 17 17 C 1.53940 * 86.11460 * 155.35445 * 16 15 13 18 18 O 1.42899 * 113.74707 * 269.15245 * 17 16 15 19 19 C 1.50706 * 113.74038 * 137.95508 * 17 16 15 20 20 H 1.08002 * 119.99945 * 1.92193 * 19 17 16 21 21 C 1.37870 * 120.00163 * 181.92586 * 19 17 16 22 22 N 1.31514 * 120.00056 * 359.97438 * 21 19 17 23 23 Si 1.86794 * 120.00162 * 179.97438 * 21 19 17 24 24 H 1.48510 * 109.47308 * 269.99693 * 23 21 19 25 25 H 1.48496 * 109.47234 * 29.99609 * 23 21 19 26 26 H 1.48500 * 109.47470 * 150.00062 * 23 21 19 27 27 C 1.47811 * 134.45761 * 359.86267 * 15 13 12 28 28 N 1.28477 * 124.95532 * 312.45265 * 9 8 2 29 29 H 1.08998 * 109.47060 * 264.61750 * 1 2 3 30 30 H 1.09000 * 109.46818 * 24.61717 * 1 2 3 31 31 H 1.08994 * 109.47044 * 144.61623 * 1 2 3 32 32 H 1.07999 * 119.97442 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.98307 * 179.97438 * 6 4 3 34 34 H 1.08005 * 120.01834 * 180.29600 * 7 6 4 35 35 H 1.08005 * 126.43704 * 0.02562 * 10 9 8 36 36 H 1.07993 * 127.22116 * 180.25614 * 11 10 9 37 37 H 1.09002 * 113.76379 * 41.05363 * 16 15 13 38 38 H 1.08996 * 113.87208 * 269.67317 * 16 15 13 39 39 H 0.96698 * 114.00674 * 178.07914 * 18 17 16 40 40 H 0.97007 * 120.00509 * 180.02562 * 22 21 19 41 41 H 1.08996 * 113.76609 * 90.38321 * 27 15 13 42 42 H 1.08997 * 113.83487 * 318.91854 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1959 0.0000 4 6 3.5827 1.1963 -0.0005 5 9 4.2570 2.3671 -0.0011 6 6 4.2776 -0.0019 -0.0016 7 6 3.5904 -1.1995 0.0041 8 6 2.2016 -1.2020 -0.0005 9 7 1.5023 -2.4167 -0.0002 10 6 1.7639 -3.4658 -0.8225 11 6 0.8820 -4.4449 -0.5126 12 6 0.0803 -3.9181 0.5279 13 6 -1.0343 -4.6055 1.2102 14 8 -1.3420 -5.7358 0.8844 15 7 -1.7106 -3.9800 2.1940 16 6 -2.8424 -4.3479 3.0667 17 6 -2.2828 -3.3081 4.0544 18 8 -1.3548 -3.8502 4.9962 19 6 -3.3424 -2.4526 4.6997 20 1 -4.3850 -2.6232 4.4751 21 6 -2.9810 -1.4521 5.5767 22 7 -1.7115 -1.2446 5.8505 23 14 -4.2943 -0.3912 6.3760 24 1 -4.5603 0.7945 5.5222 25 1 -5.5426 -1.1806 6.5295 26 1 -3.8241 0.0563 7.7117 27 6 -1.6145 -2.6507 2.8331 28 7 0.5195 -2.7000 0.7774 29 1 -0.3633 -0.0964 1.0231 30 1 -0.3633 0.9343 -0.4281 31 1 -0.3633 -0.8378 -0.5950 32 1 1.6581 2.1311 -0.0004 33 1 5.3576 0.0005 -0.0024 34 1 4.1325 -2.1335 0.0081 35 1 2.5338 -3.5117 -1.5786 36 1 0.8049 -5.4220 -0.9659 37 1 -2.7977 -5.3727 3.4355 38 1 -3.8181 -4.0852 2.6580 39 1 -0.9787 -3.1949 5.5997 40 1 -1.4571 -0.5408 6.4679 41 1 -2.2281 -1.8877 2.3542 42 1 -0.5912 -2.3227 3.0157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193981117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:32 Heat of formation + Delta-G solvation = 6.220236 kcal Electronic energy + Delta-G solvation = -29923.923798 eV Core-core repulsion = 25593.364827 eV Total energy + Delta-G solvation = -4330.558971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.02351 -43.94698 -41.09027 -40.24253 -38.93907 -35.82379 -34.57294 -34.15161 -33.98790 -31.89499 -30.93007 -29.93385 -28.24856 -27.24659 -26.99673 -24.98643 -24.01423 -22.63942 -22.17953 -21.48611 -20.02946 -19.36973 -19.12417 -18.30189 -18.06844 -17.88492 -17.29269 -16.82440 -16.74599 -16.66939 -16.05843 -15.89155 -15.55023 -15.09971 -15.02345 -14.62278 -14.50219 -14.45038 -14.38929 -14.32834 -13.93051 -13.89220 -13.73682 -13.41662 -13.09743 -12.97335 -12.85427 -12.75685 -12.26161 -12.25093 -12.22201 -11.86936 -11.55105 -11.08873 -10.82292 -10.65691 -10.28649 -10.25895 -10.12346 -9.66318 -9.42716 -8.25572 -6.43058 -0.41619 0.00414 0.55848 1.12881 1.31511 1.46140 1.49486 1.58960 1.94290 2.26032 2.33502 2.41571 2.96596 3.04396 3.25903 3.50555 3.54173 3.69305 3.81943 3.88624 3.99086 4.12934 4.21215 4.38194 4.42072 4.47158 4.58326 4.59820 4.61188 4.66106 4.69344 4.79995 4.89200 4.94096 4.94669 4.96540 5.08506 5.16278 5.22672 5.34142 5.54787 5.72596 5.92788 5.95906 6.62507 6.73209 6.73426 7.12457 7.30351 7.42727 8.80671 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009483 B = 0.003783 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.061067 B = 7398.961879 C = 9664.400891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.041 4.041 3 C -0.144 4.144 4 C 0.110 3.890 5 F -0.136 7.136 6 C -0.135 4.135 7 C -0.067 4.067 8 C 0.088 3.912 9 N -0.238 5.238 10 C 0.007 3.993 11 C -0.186 4.186 12 C -0.033 4.033 13 C 0.606 3.394 14 O -0.586 6.586 15 N -0.623 5.623 16 C 0.114 3.886 17 C 0.218 3.782 18 O -0.586 6.586 19 C -0.556 4.556 20 H 0.074 0.926 21 C 0.034 3.966 22 N -0.916 5.916 23 Si 0.968 3.032 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.283 1.283 27 C 0.114 3.886 28 N -0.260 5.260 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.161 0.839 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.234 0.766 36 H 0.177 0.823 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.386 0.614 40 H 0.275 0.725 41 H 0.082 0.918 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.878 6.861 -14.832 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.043 4.043 3 C -0.163 4.163 4 C 0.090 3.910 5 F -0.114 7.114 6 C -0.154 4.154 7 C -0.087 4.087 8 C -0.001 4.001 9 N -0.021 5.021 10 C -0.132 4.132 11 C -0.213 4.213 12 C -0.193 4.193 13 C 0.395 3.605 14 O -0.466 6.466 15 N -0.354 5.354 16 C -0.008 4.008 17 C 0.177 3.823 18 O -0.398 6.398 19 C -0.594 4.594 20 H 0.092 0.908 21 C -0.166 4.166 22 N -0.557 5.557 23 Si 0.793 3.207 24 H -0.197 1.197 25 H -0.193 1.193 26 H -0.209 1.209 27 C -0.008 4.008 28 N -0.094 5.094 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.178 0.822 33 H 0.195 0.805 34 H 0.186 0.814 35 H 0.250 0.750 36 H 0.194 0.806 37 H 0.083 0.917 38 H 0.125 0.875 39 H 0.240 0.760 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.666 6.767 -14.661 20.522 hybrid contribution -0.404 0.403 0.486 0.749 sum 12.262 7.171 -14.175 20.068 Atomic orbital electron populations 1.20766 0.89839 1.03295 1.02823 1.19749 0.97104 0.91004 0.96446 1.21088 0.92655 0.98990 1.03574 1.17903 0.90014 0.81889 1.01189 1.91532 1.80173 1.46100 1.93621 1.21272 1.02650 0.89152 1.02301 1.21128 0.90002 1.00539 0.96991 1.17740 0.91422 0.81853 1.09132 1.42891 1.22624 1.11959 1.24612 1.23707 1.03880 0.86066 0.99566 1.22027 0.97356 1.02413 0.99531 1.21927 1.01439 0.93220 1.02675 1.17000 0.81203 0.84565 0.77737 1.90685 1.70005 1.19421 1.66524 1.50108 1.33000 1.18889 1.33450 1.23516 0.90090 0.99950 0.87249 1.20156 0.87252 0.89301 0.85559 1.86040 1.62435 1.41142 1.50137 1.21716 0.93820 1.16168 1.27708 0.90779 1.25744 0.97645 0.97543 0.95693 1.69492 1.16895 1.33417 1.35847 0.85399 0.79033 0.78632 0.77637 1.19673 1.19349 1.20875 1.23960 1.00627 0.84218 0.92027 1.73872 1.03241 1.16568 1.15743 0.91386 0.88770 0.92851 0.82184 0.80502 0.81362 0.74999 0.80605 0.91673 0.87493 0.75958 0.91557 0.90012 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.71 8.82 71.24 0.63 -2.08 16 2 C -0.04 -0.91 5.89 -19.75 -0.12 -1.03 16 3 C -0.14 -2.61 9.65 22.29 0.22 -2.39 16 4 C 0.11 1.81 7.30 22.39 0.16 1.97 16 5 F -0.14 -2.37 17.27 44.97 0.78 -1.59 16 6 C -0.13 -1.74 10.02 22.30 0.22 -1.52 16 7 C -0.07 -1.00 9.61 22.38 0.22 -0.78 16 8 C 0.09 1.93 6.12 38.10 0.23 2.16 16 9 N -0.24 -6.32 2.94 -187.27 -0.55 -6.87 16 10 C 0.01 0.15 11.09 83.41 0.92 1.08 16 11 C -0.19 -5.29 10.80 22.42 0.24 -5.05 16 12 C -0.03 -1.24 7.08 42.44 0.30 -0.94 16 13 C 0.61 27.38 8.05 86.73 0.70 28.08 16 14 O -0.59 -28.65 17.65 -3.98 -0.07 -28.72 16 15 N -0.62 -28.63 3.61 -843.33 -3.05 -31.68 16 16 C 0.11 5.20 8.23 86.48 0.71 5.91 16 17 C 0.22 10.92 1.40 -10.87 -0.02 10.91 16 18 O -0.59 -31.78 13.49 -148.98 -2.01 -33.79 16 19 C -0.56 -28.29 8.61 25.60 0.22 -28.07 16 20 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 21 C 0.03 1.72 5.39 84.65 0.46 2.17 16 22 N -0.92 -47.17 11.20 21.44 0.24 -46.93 16 23 Si 0.97 39.71 29.54 68.60 2.03 41.73 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 26 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 27 C 0.11 5.31 7.31 86.45 0.63 5.94 16 28 N -0.26 -9.18 8.59 -48.17 -0.41 -9.59 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 1.77 8.05 -2.39 -0.02 1.75 16 31 H 0.05 1.46 7.20 -2.39 -0.02 1.44 16 32 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 34 H 0.17 1.65 8.01 -2.91 -0.02 1.62 16 35 H 0.23 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.18 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.11 4.38 8.09 -2.39 -0.02 4.37 16 39 H 0.39 21.17 6.60 -74.06 -0.49 20.68 16 40 H 0.27 13.38 8.31 -92.70 -0.77 12.61 16 41 H 0.08 3.67 8.09 -2.39 -0.02 3.65 16 42 H 0.06 2.99 7.51 -2.39 -0.02 2.98 16 Total: -1.00 -67.54 369.15 3.28 -64.26 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.59 Total: 36.80 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 5.73 Total: 16.36 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -3.77 Total: -95.06 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -2.08 Total: -62.51 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.78 Total: -1.59 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Total: -67.54 3.28 -64.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193981117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.485 kcal (2) G-P(sol) polarization free energy of solvation -67.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds