Wall clock time and date at job start Wed Apr 1 2020 04:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 N 1.46496 * 109.47163 * 187.67890 * 3 2 1 5 5 C 1.37093 * 119.99794 * 316.87035 * 4 3 2 6 6 H 1.07994 * 120.00370 * 21.51138 * 5 4 3 7 7 C 1.38960 * 120.00101 * 201.51668 * 5 4 3 8 8 N 1.31413 * 119.99862 * 40.57796 * 7 5 4 9 9 Si 1.86799 * 120.00102 * 220.58817 * 7 5 4 10 10 H 1.48498 * 109.47448 * 94.99090 * 9 7 5 11 11 H 1.48504 * 109.47106 * 214.99469 * 9 7 5 12 12 H 1.48503 * 109.47088 * 334.99089 * 9 7 5 13 13 C 1.34776 * 120.00125 * 136.86682 * 4 3 2 14 14 O 1.21292 * 120.00287 * 184.23840 * 13 4 3 15 15 C 1.50704 * 120.00035 * 4.24059 * 13 4 3 16 16 H 1.09005 * 109.46846 * 47.27583 * 15 13 4 17 17 O 1.42895 * 109.47105 * 167.27393 * 15 13 4 18 18 C 1.52997 * 109.46844 * 287.27607 * 15 13 4 19 19 C 1.50705 * 109.46686 * 185.09917 * 18 15 13 20 20 C 1.38257 * 119.99602 * 95.40595 * 19 18 15 21 21 C 1.38214 * 119.99762 * 179.97438 * 20 19 18 22 22 C 1.38258 * 120.00035 * 359.95489 * 21 20 19 23 23 C 1.38216 * 120.00103 * 0.02562 * 22 21 20 24 24 C 1.50700 * 120.00197 * 179.97438 * 23 22 21 25 25 F 1.39897 * 109.47107 * 359.97438 * 24 23 22 26 26 F 1.39902 * 109.47120 * 119.99723 * 24 23 22 27 27 F 1.39902 * 109.47083 * 239.99600 * 24 23 22 28 28 C 1.38209 * 119.99939 * 275.12658 * 19 18 15 29 29 H 1.08993 * 109.46748 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46828 * 299.99938 * 1 2 3 31 31 H 1.08999 * 109.46917 * 60.00033 * 1 2 3 32 32 H 1.09001 * 109.47142 * 239.99756 * 2 1 3 33 33 H 1.08999 * 109.46917 * 119.99967 * 2 1 3 34 34 H 1.09001 * 109.47136 * 67.67623 * 3 2 1 35 35 H 1.09005 * 109.46975 * 307.67541 * 3 2 1 36 36 H 0.97000 * 119.99725 * 184.94119 * 8 7 5 37 37 H 0.96710 * 114.00173 * 59.99976 * 17 15 13 38 38 H 1.08996 * 109.47195 * 305.09961 * 18 15 13 39 39 H 1.08995 * 109.47077 * 65.10301 * 18 15 13 40 40 H 1.07998 * 120.00460 * 359.97438 * 20 19 18 41 41 H 1.07998 * 119.99913 * 179.97438 * 21 20 19 42 42 H 1.08001 * 120.00389 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.00546 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4934 1.4467 -0.1846 5 6 4.2731 0.5468 0.4949 6 1 3.8372 -0.3632 0.8796 7 6 5.6246 0.8057 0.6888 8 7 6.0240 2.0205 0.9916 9 14 6.8735 -0.5729 0.5186 10 1 7.4327 -0.5672 -0.8571 11 1 7.9700 -0.3713 1.4996 12 1 6.2106 -1.8762 0.7781 13 6 4.0637 2.3350 -1.0224 14 8 5.2571 2.2891 -1.2343 15 6 3.2188 3.3856 -1.6958 16 1 2.5696 3.8575 -0.9582 17 8 4.0669 4.3732 -2.2852 18 6 2.3642 2.7323 -2.7838 19 6 1.6134 3.7978 -3.5402 20 6 2.1288 4.3006 -4.7205 21 6 1.4401 5.2775 -5.4146 22 6 0.2353 5.7511 -4.9290 23 6 -0.2801 5.2482 -3.7493 24 6 -1.5929 5.7649 -3.2197 25 9 -2.0944 6.7405 -4.0879 26 9 -2.5061 4.7091 -3.1265 27 9 -1.3968 6.3250 -1.9528 28 6 0.4070 4.2682 -3.0570 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.7932 1.9152 0.9507 35 1 1.5690 1.9944 -0.8134 36 1 6.9716 2.2174 1.0565 37 1 4.6731 4.0235 -2.9526 38 1 3.0081 2.1840 -3.4713 39 1 1.6544 2.0446 -2.3242 40 1 3.0695 3.9301 -5.1002 41 1 1.8428 5.6706 -6.3363 42 1 -0.3027 6.5148 -5.4711 43 1 0.0024 3.8725 -2.1372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275177377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:18 Heat of formation + Delta-G solvation = -195.103307 kcal Electronic energy + Delta-G solvation = -31315.559882 eV Core-core repulsion = 26525.581680 eV Total energy + Delta-G solvation = -4789.978202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.28334 -47.81860 -47.72527 -39.91735 -38.74349 -36.22912 -34.99056 -33.02141 -32.54982 -31.93007 -31.30275 -28.91588 -26.19410 -25.85404 -25.26908 -23.44511 -22.38756 -21.23398 -20.79770 -19.68353 -18.59864 -18.49231 -18.25297 -17.13416 -16.42140 -16.14713 -15.84399 -15.21089 -14.98214 -14.76184 -14.64931 -14.51527 -14.41704 -14.36092 -14.18954 -13.96741 -13.90276 -13.61010 -13.44922 -13.16850 -13.07007 -12.77296 -12.72692 -12.28800 -11.94899 -11.71695 -11.66731 -11.51847 -11.30153 -11.19142 -10.88482 -10.72663 -10.65696 -10.54995 -10.14719 -10.09943 -9.95914 -9.31771 -9.01285 -8.77267 -8.05886 -7.07300 -6.22843 -3.68136 0.83233 1.12414 2.53259 3.34736 3.36873 3.44945 3.48795 3.58759 3.88650 4.11723 4.29222 4.31899 4.58827 4.66090 4.79311 4.84535 4.97153 5.11126 5.19188 5.23399 5.31545 5.34690 5.41760 5.49835 5.57158 5.67452 5.68727 5.78706 5.96542 6.00706 6.04870 6.10428 6.17262 6.20022 6.22864 6.31393 6.45708 6.64843 6.66009 6.81786 7.60352 8.01480 8.14519 8.94241 9.14025 9.65208 10.22469 10.84714 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.003252 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.014104 B = 8606.762657 C = 9623.190757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.094 3.906 4 N -0.437 5.437 5 C -0.371 4.371 6 H 0.091 0.909 7 C 0.088 3.912 8 N -0.783 5.783 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.275 1.275 13 C 0.410 3.590 14 O -0.535 6.535 15 C 0.107 3.893 16 H 0.100 0.900 17 O -0.541 6.541 18 C -0.119 4.119 19 C -0.060 4.060 20 C -0.075 4.075 21 C -0.118 4.118 22 C -0.084 4.084 23 C -0.182 4.182 24 C 0.509 3.491 25 F -0.180 7.180 26 F -0.178 7.178 27 F -0.176 7.176 28 C -0.069 4.069 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.265 0.735 37 H 0.374 0.626 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.676 4.926 -11.129 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.030 4.030 4 N -0.159 5.159 5 C -0.495 4.495 6 H 0.108 0.892 7 C -0.127 4.127 8 N -0.415 5.415 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.200 1.200 13 C 0.198 3.802 14 O -0.414 6.414 15 C 0.044 3.956 16 H 0.117 0.883 17 O -0.345 6.345 18 C -0.157 4.157 19 C -0.060 4.060 20 C -0.093 4.093 21 C -0.136 4.136 22 C -0.102 4.102 23 C -0.184 4.184 24 C 0.454 3.546 25 F -0.162 7.162 26 F -0.159 7.159 27 F -0.157 7.157 28 C -0.087 4.087 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.222 0.778 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.306 5.448 -10.693 18.673 hybrid contribution 0.617 -0.785 -0.219 1.022 sum -13.689 4.663 -10.912 18.116 Atomic orbital electron populations 1.21764 0.96450 1.01229 1.01332 1.21720 0.94181 0.97672 1.03200 1.21738 0.84239 0.96665 1.00313 1.43542 1.03563 1.31902 1.36880 1.19031 0.91583 1.00187 1.38689 0.89158 1.24698 0.98124 0.95712 0.94119 1.70192 1.16542 1.22177 1.32638 0.86641 0.81202 0.82835 0.78206 1.20550 1.21790 1.19958 1.20172 0.88975 0.86279 0.84806 1.90533 1.14968 1.72221 1.63725 1.21674 0.90620 0.90065 0.93251 0.88259 1.86513 1.53839 1.34760 1.59365 1.21609 0.99462 0.96111 0.98520 1.19792 0.93724 0.97543 0.94936 1.21313 0.99054 0.95077 0.93844 1.21115 0.94651 0.97410 1.00457 1.20924 0.96211 0.98923 0.94147 1.19875 0.95444 1.03241 0.99811 1.18342 0.85255 0.75352 0.75607 1.93147 1.89008 1.64222 1.69779 1.93214 1.69577 1.57084 1.96049 1.93233 1.95176 1.85738 1.41549 1.20759 0.94360 0.94619 0.98951 0.93004 0.92905 0.93172 0.91701 0.91084 0.93277 0.91590 0.92485 0.77834 0.89765 0.88576 0.85119 0.84991 0.84833 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.44 16 2 C -0.13 -2.04 5.31 -26.73 -0.14 -2.18 16 3 C 0.09 1.69 5.38 -4.04 -0.02 1.66 16 4 N -0.44 -10.25 2.91 -114.81 -0.33 -10.58 16 5 C -0.37 -9.77 8.93 -14.93 -0.13 -9.91 16 6 H 0.09 2.27 6.48 -52.49 -0.34 1.93 16 7 C 0.09 2.45 3.70 -17.46 -0.06 2.38 16 8 N -0.78 -23.14 11.59 55.50 0.64 -22.49 16 9 Si 0.88 21.59 29.69 -169.99 -5.05 16.55 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.41 9.80 6.50 -10.98 -0.07 9.73 16 14 O -0.53 -15.07 13.04 -14.03 -0.18 -15.25 16 15 C 0.11 1.97 2.64 -27.88 -0.07 1.90 16 16 H 0.10 1.81 7.61 -51.93 -0.39 1.42 16 17 O -0.54 -10.15 12.34 -54.81 -0.68 -10.83 16 18 C -0.12 -1.68 4.74 -27.88 -0.13 -1.81 16 19 C -0.06 -0.74 4.72 -104.62 -0.49 -1.24 16 20 C -0.07 -0.82 9.44 -39.58 -0.37 -1.20 16 21 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 22 C -0.08 -0.85 9.43 -39.58 -0.37 -1.22 16 23 C -0.18 -2.09 5.37 -104.62 -0.56 -2.66 16 24 C 0.51 5.77 3.32 36.01 0.12 5.89 16 25 F -0.18 -1.95 15.97 2.25 0.04 -1.92 16 26 F -0.18 -2.05 17.23 2.25 0.04 -2.01 16 27 F -0.18 -2.18 17.24 2.25 0.04 -2.14 16 28 C -0.07 -0.83 9.28 -39.58 -0.37 -1.20 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.21 6.96 -51.93 -0.36 0.85 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.99 3.82 -51.93 -0.20 0.79 16 36 H 0.26 7.57 8.32 -40.82 -0.34 7.24 16 37 H 0.37 6.26 8.71 45.56 0.40 6.66 16 38 H 0.08 1.17 8.05 -51.93 -0.42 0.76 16 39 H 0.10 1.27 5.49 -51.93 -0.29 0.98 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.13 1.10 7.16 -52.49 -0.38 0.73 16 43 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -32.83 367.52 -7.16 -39.99 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.49 Total: 5.97 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.72 Total: -2.82 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.31 Total: -33.07 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.86 Total: -26.08 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.11 Total: -6.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.05 Total: 16.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.83 -7.16 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275177377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.112 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds