Wall clock time and date at job start Wed Apr 1 2020 04:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 N 1.46496 * 109.47163 * 187.67890 * 3 2 1 5 5 C 1.37093 * 119.99794 * 316.87035 * 4 3 2 6 6 H 1.07994 * 120.00370 * 21.51138 * 5 4 3 7 7 C 1.38960 * 120.00101 * 201.51668 * 5 4 3 8 8 N 1.31413 * 119.99862 * 40.57796 * 7 5 4 9 9 Si 1.86799 * 120.00102 * 220.58817 * 7 5 4 10 10 H 1.48498 * 109.47448 * 94.99090 * 9 7 5 11 11 H 1.48504 * 109.47106 * 214.99469 * 9 7 5 12 12 H 1.48503 * 109.47088 * 334.99089 * 9 7 5 13 13 C 1.34776 * 120.00125 * 136.86682 * 4 3 2 14 14 O 1.21292 * 120.00287 * 184.23840 * 13 4 3 15 15 C 1.50704 * 120.00035 * 4.24059 * 13 4 3 16 16 H 1.09005 * 109.46846 * 47.27583 * 15 13 4 17 17 O 1.42895 * 109.47105 * 167.27393 * 15 13 4 18 18 C 1.52997 * 109.46844 * 287.27607 * 15 13 4 19 19 C 1.50705 * 109.46686 * 185.09917 * 18 15 13 20 20 C 1.38257 * 119.99602 * 95.40595 * 19 18 15 21 21 C 1.38214 * 119.99762 * 179.97438 * 20 19 18 22 22 C 1.38258 * 120.00035 * 359.95489 * 21 20 19 23 23 C 1.38216 * 120.00103 * 0.02562 * 22 21 20 24 24 C 1.50700 * 120.00197 * 179.97438 * 23 22 21 25 25 F 1.39897 * 109.47107 * 359.97438 * 24 23 22 26 26 F 1.39902 * 109.47120 * 119.99723 * 24 23 22 27 27 F 1.39902 * 109.47083 * 239.99600 * 24 23 22 28 28 C 1.38209 * 119.99939 * 275.12658 * 19 18 15 29 29 H 1.08993 * 109.46748 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46828 * 299.99938 * 1 2 3 31 31 H 1.08999 * 109.46917 * 60.00033 * 1 2 3 32 32 H 1.09001 * 109.47142 * 239.99756 * 2 1 3 33 33 H 1.08999 * 109.46917 * 119.99967 * 2 1 3 34 34 H 1.09001 * 109.47136 * 67.67623 * 3 2 1 35 35 H 1.09005 * 109.46975 * 307.67541 * 3 2 1 36 36 H 0.97000 * 119.99725 * 184.94119 * 8 7 5 37 37 H 0.96710 * 114.00173 * 59.99976 * 17 15 13 38 38 H 1.08996 * 109.47195 * 305.09961 * 18 15 13 39 39 H 1.08995 * 109.47077 * 65.10301 * 18 15 13 40 40 H 1.07998 * 120.00460 * 359.97438 * 20 19 18 41 41 H 1.07998 * 119.99913 * 179.97438 * 21 20 19 42 42 H 1.08001 * 120.00389 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.00546 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4934 1.4467 -0.1846 5 6 4.2731 0.5468 0.4949 6 1 3.8372 -0.3632 0.8796 7 6 5.6246 0.8057 0.6888 8 7 6.0240 2.0205 0.9916 9 14 6.8735 -0.5729 0.5186 10 1 7.4327 -0.5672 -0.8571 11 1 7.9700 -0.3713 1.4996 12 1 6.2106 -1.8762 0.7781 13 6 4.0637 2.3350 -1.0224 14 8 5.2571 2.2891 -1.2343 15 6 3.2188 3.3856 -1.6958 16 1 2.5696 3.8575 -0.9582 17 8 4.0669 4.3732 -2.2852 18 6 2.3642 2.7323 -2.7838 19 6 1.6134 3.7978 -3.5402 20 6 2.1288 4.3006 -4.7205 21 6 1.4401 5.2775 -5.4146 22 6 0.2353 5.7511 -4.9290 23 6 -0.2801 5.2482 -3.7493 24 6 -1.5929 5.7649 -3.2197 25 9 -2.0944 6.7405 -4.0879 26 9 -2.5061 4.7091 -3.1265 27 9 -1.3968 6.3250 -1.9528 28 6 0.4070 4.2682 -3.0570 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.7932 1.9152 0.9507 35 1 1.5690 1.9944 -0.8134 36 1 6.9716 2.2174 1.0565 37 1 4.6731 4.0235 -2.9526 38 1 3.0081 2.1840 -3.4713 39 1 1.6544 2.0446 -2.3242 40 1 3.0695 3.9301 -5.1002 41 1 1.8428 5.6706 -6.3363 42 1 -0.3027 6.5148 -5.4711 43 1 0.0024 3.8725 -2.1372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275177377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:17 Heat of formation + Delta-G solvation = -214.448656 kcal Electronic energy + Delta-G solvation = -31316.398759 eV Core-core repulsion = 26525.581680 eV Total energy + Delta-G solvation = -4790.817079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.16391 -48.68624 -48.62729 -41.12099 -40.12587 -37.73399 -36.65044 -34.42829 -34.07739 -32.98893 -32.69851 -30.20435 -27.47979 -27.03541 -26.69419 -24.88734 -23.26212 -22.27825 -22.07200 -21.46402 -19.48494 -19.37279 -19.27645 -18.74657 -17.85748 -17.22445 -17.18040 -16.74918 -16.38713 -16.12019 -16.03692 -15.54614 -15.46693 -15.33832 -15.23556 -15.07423 -14.87504 -14.79497 -14.77927 -14.60243 -14.14984 -13.77475 -13.69063 -13.57891 -13.46625 -13.36434 -13.04734 -12.78877 -12.63069 -12.48418 -12.35346 -12.20311 -12.09019 -12.03957 -11.82744 -11.61528 -11.34784 -10.79836 -10.13895 -10.02435 -9.74675 -9.05673 -8.30527 -5.74672 -0.00456 0.28593 1.39071 1.48083 1.52167 1.66633 2.27466 2.38296 2.55599 2.72879 3.01234 3.06398 3.23724 3.42611 3.44550 3.74390 3.84442 3.97340 4.02425 4.12085 4.17288 4.23718 4.29388 4.34323 4.45072 4.48015 4.66322 4.73986 4.81460 4.85436 4.91026 5.03414 5.07764 5.18741 5.27145 5.34954 5.37712 5.53314 5.56067 5.57620 5.83718 6.06220 6.67077 6.96663 7.22282 7.71791 8.34211 8.77176 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.003252 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.014104 B = 8606.762657 C = 9623.190757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.089 3.911 4 N -0.452 5.452 5 C -0.379 4.379 6 H 0.097 0.903 7 C 0.042 3.958 8 N -0.827 5.827 9 Si 0.939 3.061 10 H -0.295 1.295 11 H -0.290 1.290 12 H -0.254 1.254 13 C 0.399 3.601 14 O -0.585 6.585 15 C 0.120 3.880 16 H 0.101 0.899 17 O -0.550 6.550 18 C -0.103 4.103 19 C -0.075 4.075 20 C -0.080 4.080 21 C -0.114 4.114 22 C -0.081 4.081 23 C -0.193 4.193 24 C 0.511 3.489 25 F -0.177 7.177 26 F -0.180 7.180 27 F -0.184 7.184 28 C -0.078 4.078 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.257 0.743 37 H 0.382 0.618 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.162 0.838 42 H 0.154 0.846 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.698 4.901 -12.809 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.033 4.033 4 N -0.173 5.173 5 C -0.505 4.505 6 H 0.114 0.886 7 C -0.168 4.168 8 N -0.462 5.462 9 Si 0.765 3.235 10 H -0.223 1.223 11 H -0.217 1.217 12 H -0.178 1.178 13 C 0.188 3.812 14 O -0.467 6.467 15 C 0.057 3.943 16 H 0.119 0.881 17 O -0.355 6.355 18 C -0.140 4.140 19 C -0.075 4.075 20 C -0.098 4.098 21 C -0.132 4.132 22 C -0.099 4.099 23 C -0.195 4.195 24 C 0.457 3.543 25 F -0.158 7.158 26 F -0.161 7.161 27 F -0.165 7.165 28 C -0.096 4.096 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.231 0.769 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.160 0.840 41 H 0.180 0.820 42 H 0.171 0.829 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.372 5.393 -12.360 21.211 hybrid contribution 1.157 -0.716 0.237 1.381 sum -15.216 4.678 -12.123 20.009 Atomic orbital electron populations 1.21707 0.93142 1.02594 1.02521 1.21645 0.96943 0.95631 1.01921 1.22029 0.81265 0.98726 1.01294 1.43800 1.05719 1.31486 1.36271 1.19355 0.92099 1.01039 1.37958 0.88555 1.25464 1.00022 0.97208 0.94149 1.70271 1.16052 1.24266 1.35639 0.85776 0.79337 0.81408 0.76971 1.22258 1.21677 1.17792 1.21255 0.89068 0.86669 0.84178 1.90494 1.17393 1.73561 1.65295 1.21545 0.90027 0.88355 0.94399 0.88081 1.86478 1.54302 1.35057 1.59669 1.21360 0.98945 0.96471 0.97231 1.19618 0.94131 0.97928 0.95803 1.21563 0.99589 0.95167 0.93464 1.21452 0.94110 0.96479 1.01159 1.21258 0.96340 0.98769 0.93570 1.19961 0.95517 1.03518 1.00470 1.18332 0.85322 0.75301 0.75314 1.93151 1.88978 1.64093 1.69583 1.93209 1.69676 1.57167 1.96044 1.93218 1.95228 1.85884 1.42188 1.20861 0.94429 0.94965 0.99353 0.91606 0.92271 0.91441 0.92382 0.92986 0.93673 0.88620 0.93318 0.76941 0.89704 0.87700 0.83970 0.82027 0.82880 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.91 71.98 0.71 -2.30 16 2 C -0.12 -3.71 5.31 30.60 0.16 -3.55 16 3 C 0.09 3.11 5.38 86.38 0.46 3.58 16 4 N -0.45 -21.31 2.91 -635.53 -1.85 -23.16 16 5 C -0.38 -20.25 8.93 84.04 0.75 -19.50 16 6 H 0.10 4.89 6.48 -2.91 -0.02 4.87 16 7 C 0.04 2.37 3.70 84.93 0.31 2.69 16 8 N -0.83 -50.62 11.59 21.67 0.25 -50.37 16 9 Si 0.94 45.41 29.69 68.60 2.04 47.45 16 10 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.25 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.40 19.32 6.50 87.66 0.57 19.89 16 14 O -0.58 -33.86 13.04 15.66 0.20 -33.66 16 15 C 0.12 4.33 2.64 29.85 0.08 4.41 16 16 H 0.10 3.61 7.61 -2.38 -0.02 3.60 16 17 O -0.55 -20.43 12.34 -130.26 -1.61 -22.03 16 18 C -0.10 -2.72 4.74 29.85 0.14 -2.58 16 19 C -0.07 -1.70 4.72 -19.87 -0.09 -1.79 16 20 C -0.08 -1.55 9.44 22.27 0.21 -1.34 16 21 C -0.11 -1.82 10.05 22.27 0.22 -1.60 16 22 C -0.08 -1.40 9.43 22.27 0.21 -1.19 16 23 C -0.19 -3.98 5.37 -19.86 -0.11 -4.09 16 24 C 0.51 10.61 3.32 71.24 0.24 10.85 16 25 F -0.18 -3.44 15.97 44.97 0.72 -2.72 16 26 F -0.18 -3.81 17.23 44.97 0.78 -3.03 16 27 F -0.18 -4.28 17.24 44.97 0.78 -3.51 16 28 C -0.08 -1.72 9.28 22.27 0.21 -1.51 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.74 6.96 -2.39 -0.02 1.73 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.10 2.71 3.82 -2.38 -0.01 2.70 16 36 H 0.26 15.38 8.32 -92.71 -0.77 14.61 16 37 H 0.38 12.75 8.71 -74.05 -0.64 12.10 16 38 H 0.08 2.25 8.05 -2.39 -0.02 2.23 16 39 H 0.11 2.54 5.49 -2.39 -0.01 2.53 16 40 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.15 1.98 7.16 -2.91 -0.02 1.96 16 43 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -72.87 367.52 5.81 -67.07 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.42 Total: 22.02 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.08 Total: 1.96 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.60 Total: -73.54 kcal Atomic # 8 Polarization: -54.29 SS G_CDS: -1.40 Total: -55.69 kcal Atomic # 9 Polarization: -11.53 SS G_CDS: 2.27 Total: -9.27 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.04 Total: 47.45 kcal Total: -72.87 5.81 -67.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275177377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.382 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds