Wall clock time and date at job start Wed Apr 1 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00132 * 2 1 4 4 H 1.48500 * 109.47248 * 274.90352 * 3 2 1 5 5 H 1.48503 * 109.46813 * 34.90115 * 3 2 1 6 6 H 1.48498 * 109.47124 * 154.89979 * 3 2 1 7 7 C 1.38813 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99994 * 339.73398 * 7 2 1 9 9 N 1.36933 * 119.99915 * 159.74342 * 7 2 1 10 10 C 1.46922 * 120.63248 * 152.74550 * 9 7 2 11 11 C 1.53200 * 108.77729 * 126.43100 * 10 9 7 12 12 C 1.53035 * 109.31247 * 54.63346 * 11 10 9 13 13 C 1.53041 * 109.53991 * 298.63791 * 12 11 10 14 14 H 1.09003 * 109.49361 * 301.38401 * 13 12 11 15 15 C 1.53005 * 109.49976 * 181.31769 * 13 12 11 16 16 N 1.46503 * 109.46845 * 175.06192 * 15 13 12 17 17 C 1.34778 * 119.99372 * 180.02562 * 16 15 13 18 18 O 1.21589 * 120.00443 * 0.27133 * 17 16 15 19 19 C 1.47561 * 119.99519 * 180.02562 * 17 16 15 20 20 C 1.40116 * 120.59325 * 359.71390 * 19 17 16 21 21 N 1.30614 * 121.17496 * 179.75029 * 20 19 17 22 22 C 1.34909 * 122.44435 * 0.49495 * 21 20 19 23 23 C 1.40611 * 128.45608 * 179.76836 * 22 21 20 24 24 C 1.32280 * 115.91229 * 180.02562 * 23 22 21 25 25 S 1.75513 * 110.83465 * 359.97438 * 24 23 22 26 26 C 1.40099 * 119.27461 * 359.79954 * 22 21 20 27 27 C 1.39365 * 119.74644 * 359.95313 * 26 22 21 28 28 C 1.46935 * 120.60159 * 332.75915 * 9 7 2 29 29 H 0.96999 * 120.00006 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.58990 * 6.64282 * 10 9 7 31 31 H 1.09004 * 109.58560 * 246.21490 * 10 9 7 32 32 H 1.08997 * 109.49364 * 294.68570 * 11 10 9 33 33 H 1.08999 * 109.49801 * 174.58455 * 11 10 9 34 34 H 1.09002 * 109.46207 * 178.61721 * 12 11 10 35 35 H 1.08998 * 109.45005 * 58.64930 * 12 11 10 36 36 H 1.08999 * 109.46714 * 55.06365 * 15 13 12 37 37 H 1.08991 * 109.47255 * 295.06327 * 15 13 12 38 38 H 0.97001 * 120.00368 * 359.97438 * 16 15 13 39 39 H 1.08001 * 119.40932 * 359.97438 * 20 19 17 40 40 H 1.08001 * 122.04445 * 0.05355 * 23 22 21 41 41 H 1.08003 * 124.58739 * 179.97438 * 24 23 22 42 42 H 1.08008 * 120.72639 * 180.02562 * 27 26 22 43 43 H 1.09002 * 109.55769 * 113.77043 * 28 9 7 44 44 H 1.08997 * 109.62172 * 353.34492 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3941 2.1062 -1.3949 5 1 1.5033 2.6205 0.8011 6 1 3.5957 1.4124 0.5939 7 6 2.0102 -1.2022 -0.0005 8 1 1.5203 -2.1086 0.3230 9 7 3.3160 -1.2387 -0.4111 10 6 4.2336 -2.2653 0.1016 11 6 4.8808 -2.9855 -1.0856 12 6 5.5409 -1.9547 -2.0041 13 6 4.4782 -0.9943 -2.5428 14 1 3.7189 -1.5586 -3.0843 15 6 5.1340 0.0156 -3.4868 16 7 4.1011 0.8594 -4.0931 17 6 4.4476 1.8266 -4.9654 18 8 5.6168 1.9957 -5.2529 19 6 3.4073 2.6769 -5.5756 20 6 2.0552 2.4856 -5.2616 21 7 1.1256 3.2347 -5.7913 22 6 1.4033 4.2201 -6.6699 23 6 0.5102 5.0930 -7.3160 24 6 1.0560 5.9747 -8.1373 25 16 2.8008 5.7904 -8.1810 26 6 2.7354 4.4603 -7.0314 27 6 3.7523 3.6825 -6.4808 28 6 3.8257 -0.2515 -1.3727 29 1 -0.4850 0.8400 -0.0004 30 1 3.6784 -2.9828 0.7057 31 1 5.0066 -1.7941 0.7087 32 1 4.1174 -3.5310 -1.6402 33 1 5.6346 -3.6833 -0.7208 34 1 6.0234 -2.4666 -2.8368 35 1 6.2868 -1.3927 -1.4421 36 1 5.6741 -0.5166 -4.2698 37 1 5.8293 0.6394 -2.9253 38 1 3.1679 0.7214 -3.8673 39 1 1.7772 1.7072 -4.5665 40 1 -0.5562 5.0467 -7.1515 41 1 0.5027 6.7088 -8.7043 42 1 4.7846 3.8542 -6.7480 43 1 4.5651 0.3843 -0.8857 44 1 3.0017 0.3594 -1.7416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530641742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:48 Heat of formation + Delta-G solvation = 42.935640 kcal Electronic energy + Delta-G solvation = -27471.814180 eV Core-core repulsion = 23709.060484 eV Total energy + Delta-G solvation = -3762.753696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -40.92624 -39.46769 -38.10607 -35.95316 -34.98940 -33.16377 -32.76734 -31.43109 -30.69059 -29.90930 -26.24471 -25.34230 -24.94436 -23.85484 -22.61125 -21.86709 -21.02702 -20.58170 -19.47940 -18.65244 -17.33935 -16.99429 -16.80974 -16.39463 -15.69001 -15.62759 -15.27392 -14.67467 -14.45550 -14.25130 -14.21366 -13.92714 -13.47508 -13.35975 -13.34187 -13.10251 -12.92046 -12.86290 -12.51470 -12.15094 -11.98048 -11.65937 -11.50396 -11.46061 -10.85499 -10.74953 -10.64922 -10.58083 -10.30286 -10.16175 -9.92259 -9.75077 -9.61506 -9.49833 -9.18518 -8.94154 -8.67440 -8.35711 -7.02436 -5.99697 -3.35762 -0.12997 0.76343 1.01077 1.47685 1.60204 2.80311 3.08748 3.23260 3.45459 3.46708 3.58641 3.75716 4.29348 4.45884 4.46202 4.56074 4.70487 4.77495 4.83976 5.09520 5.13950 5.20082 5.25793 5.36787 5.39659 5.50716 5.56811 5.63803 5.74614 5.77523 5.79408 5.98175 6.05305 6.07908 6.12398 6.25649 6.29568 6.39908 6.51173 6.52312 6.65237 6.66325 6.92667 7.43114 7.52438 7.90941 8.09697 8.28399 8.89214 9.66767 10.04884 11.16058 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.003085 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.814585 B = 9074.341247 C =10516.536801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.025 3.975 3 Si 0.878 3.122 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.260 4.260 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.146 3.854 11 C -0.135 4.135 12 C -0.100 4.100 13 C -0.121 4.121 14 H 0.082 0.918 15 C 0.126 3.874 16 N -0.716 5.716 17 C 0.566 3.434 18 O -0.540 6.540 19 C -0.178 4.178 20 C 0.163 3.837 21 N -0.455 5.455 22 C 0.145 3.855 23 C -0.117 4.117 24 C -0.166 4.166 25 S 0.119 5.881 26 C -0.213 4.213 27 C 0.030 3.970 28 C 0.133 3.867 29 H 0.263 0.737 30 H 0.063 0.937 31 H 0.022 0.978 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.405 0.595 39 H 0.170 0.830 40 H 0.157 0.843 41 H 0.179 0.821 42 H 0.153 0.847 43 H 0.027 0.973 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 7.651 -16.137 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.174 4.174 3 Si 0.708 3.292 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.329 5.329 10 C 0.020 3.980 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.142 4.142 14 H 0.100 0.900 15 C 0.002 3.998 16 N -0.368 5.368 17 C 0.352 3.648 18 O -0.418 6.418 19 C -0.186 4.186 20 C -0.009 4.009 21 N -0.163 5.163 22 C 0.011 3.989 23 C -0.147 4.147 24 C -0.303 4.303 25 S 0.382 5.618 26 C -0.330 4.330 27 C -0.001 4.001 28 C 0.008 3.992 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.242 0.758 39 H 0.187 0.813 40 H 0.174 0.826 41 H 0.196 0.804 42 H 0.171 0.829 43 H 0.045 0.955 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.384 8.540 -16.905 20.328 hybrid contribution -0.391 0.418 0.720 0.920 sum 6.993 8.958 -16.185 19.776 Atomic orbital electron populations 1.69821 1.05625 1.26562 1.52848 1.25265 0.95192 0.97332 0.99640 0.87047 0.80196 0.84897 0.77037 1.21738 1.23119 1.19570 1.18946 0.84751 0.94763 1.40379 0.89572 1.44336 1.08557 1.32964 1.47012 1.20962 0.92417 0.91241 0.93342 1.21991 0.99449 0.97472 0.98463 1.21338 0.96930 0.96850 0.98739 1.22008 0.98533 0.96552 0.97063 0.90011 1.21530 0.90045 0.92261 0.95946 1.46020 1.11897 1.34416 1.44443 1.17768 0.87776 0.80105 0.79156 1.90771 1.18737 1.70195 1.62137 1.20931 0.95489 1.00160 1.02035 1.23005 0.87331 0.95711 0.94897 1.67638 1.36790 1.04062 1.07783 1.19325 0.90015 0.94642 0.94912 1.19695 1.01568 0.95426 0.98021 1.25427 0.97520 1.03715 1.03643 1.84283 1.03886 1.30304 1.43303 1.23546 0.98247 1.04592 1.06583 1.20951 0.99053 0.89646 0.90405 1.21378 0.96893 0.91823 0.89154 0.92686 0.91890 0.96001 0.91898 0.92544 0.92688 0.92283 0.91227 0.91298 0.75840 0.81343 0.82586 0.80397 0.82918 0.95505 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.91 13.97 55.49 0.78 -26.13 16 2 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 3 Si 0.88 21.80 24.34 -169.99 -4.14 17.66 16 4 H -0.29 -6.74 6.70 56.52 0.38 -6.36 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.70 6.45 56.52 0.36 -6.34 16 7 C -0.26 -6.99 10.04 -15.06 -0.15 -7.15 16 8 H 0.09 2.49 8.05 -52.49 -0.42 2.06 16 9 N -0.61 -13.69 2.77 -172.32 -0.48 -14.17 16 10 C 0.15 2.74 6.52 -3.71 -0.02 2.72 16 11 C -0.13 -2.04 6.08 -26.61 -0.16 -2.20 16 12 C -0.10 -1.43 5.17 -26.69 -0.14 -1.56 16 13 C -0.12 -1.92 2.37 -90.50 -0.21 -2.13 16 14 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 15 C 0.13 1.83 5.07 -4.04 -0.02 1.81 16 16 N -0.72 -10.61 5.28 -61.34 -0.32 -10.93 16 17 C 0.57 8.69 7.77 -12.46 -0.10 8.59 16 18 O -0.54 -9.45 16.41 5.29 0.09 -9.37 16 19 C -0.18 -2.49 5.89 -104.87 -0.62 -3.11 16 20 C 0.16 2.31 10.69 -17.36 -0.19 2.13 16 21 N -0.45 -6.75 10.39 -11.01 -0.11 -6.87 16 22 C 0.15 1.89 6.96 -84.92 -0.59 1.30 16 23 C -0.12 -1.16 10.16 -40.61 -0.41 -1.57 16 24 C -0.17 -1.26 11.08 28.81 0.32 -0.95 16 25 S 0.12 1.04 23.29 -107.50 -2.50 -1.46 16 26 C -0.21 -2.56 6.49 -38.46 -0.25 -2.81 16 27 C 0.03 0.38 9.73 -38.64 -0.38 0.00 16 28 C 0.13 2.70 3.27 -3.71 -0.01 2.69 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.41 5.82 5.76 -40.82 -0.23 5.59 16 39 H 0.17 2.21 6.41 -52.49 -0.34 1.88 16 40 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.18 0.74 8.06 -52.48 -0.42 0.31 16 42 H 0.15 1.77 7.72 -52.48 -0.41 1.36 16 43 H 0.03 0.56 6.98 -51.93 -0.36 0.20 16 44 H 0.07 1.48 3.71 -51.93 -0.19 1.29 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -32.48 365.37 -10.00 -42.48 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.79 Total: 4.93 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -3.02 Total: -1.65 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.14 Total: -58.10 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.14 Total: 17.66 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.50 Total: -1.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.48 -10.00 -42.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530641742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.414 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds