Wall clock time and date at job start Wed Apr 1 2020 03:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38775 * 120.06373 * 2 1 4 4 N 1.39947 * 120.04151 * 359.95033 * 3 2 1 5 5 C 1.34776 * 120.00295 * 214.60916 * 4 3 2 6 6 O 1.21586 * 119.99791 * 355.75749 * 5 4 3 7 7 N 1.34778 * 119.99887 * 175.76079 * 5 4 3 8 8 C 1.46496 * 120.00011 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.47272 * 179.97438 * 8 7 5 10 10 O 1.21294 * 120.00265 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.37090 * 120.00387 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00133 * 0.02562 * 12 11 9 14 14 C 1.38952 * 120.00407 * 180.02562 * 12 11 9 15 15 N 1.31416 * 119.99549 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00349 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46901 * 90.00028 * 16 14 12 18 18 H 1.48495 * 109.47092 * 210.00276 * 16 14 12 19 19 H 1.48502 * 109.46945 * 329.99790 * 16 14 12 20 20 C 1.38887 * 119.92605 * 179.97438 * 3 2 1 21 21 C 1.38179 * 120.05577 * 359.97438 * 20 3 2 22 22 C 1.38147 * 120.13835 * 359.72529 * 21 20 3 23 23 C 1.38675 * 120.06812 * 179.97438 * 2 1 3 24 24 N 1.40259 * 120.03372 * 0.02773 * 23 2 1 25 25 C 1.35067 * 127.39336 * 130.69127 * 24 23 2 26 26 N 1.30733 * 107.27732 * 179.97438 * 25 24 23 27 27 N 1.28430 * 110.64602 * 359.97438 * 26 25 24 28 28 N 1.28942 * 110.20303 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47141 * 274.94404 * 1 2 3 30 30 H 1.08999 * 109.47123 * 34.94900 * 1 2 3 31 31 H 1.09011 * 109.46701 * 154.94543 * 1 2 3 32 32 H 0.97001 * 119.99729 * 34.60586 * 4 3 2 33 33 H 0.96997 * 119.99979 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.46912 * 299.99910 * 8 7 5 35 35 H 1.09004 * 109.47379 * 59.99393 * 8 7 5 36 36 H 0.97003 * 119.99270 * 0.02562 * 11 9 8 37 37 H 0.97000 * 119.99867 * 179.97438 * 15 14 12 38 38 H 1.08000 * 119.97268 * 180.02562 * 20 3 2 39 39 H 1.08005 * 119.93144 * 180.02562 * 21 20 3 40 40 H 1.07993 * 119.96768 * 180.30000 * 22 21 20 41 41 H 1.08000 * 126.36382 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2022 1.2011 0.0000 4 7 1.5047 2.4143 -0.0011 5 6 2.0021 3.4771 -0.6641 6 8 3.0929 3.4054 -1.1963 7 7 1.2904 4.6193 -0.7370 8 6 1.8308 5.7743 -1.4581 9 6 0.8469 6.9138 -1.3909 10 8 -0.2023 6.7749 -0.7984 11 7 1.1332 8.0876 -1.9882 12 6 0.2379 9.1240 -1.9275 13 1 -0.6967 9.0001 -1.4006 14 6 0.5329 10.3340 -2.5437 15 7 1.6699 10.4846 -3.1852 16 14 -0.6867 11.7464 -2.4604 17 1 -0.4049 12.5735 -1.2597 18 1 -0.5581 12.5840 -3.6798 19 1 -2.0667 11.2044 -2.3755 20 6 3.5911 1.1977 0.0005 21 6 4.2803 0.0001 0.0016 22 6 3.5907 -1.1970 0.0079 23 6 2.2018 -1.2001 0.0005 24 7 1.5027 -2.4161 0.0005 25 6 1.7007 -3.4760 -0.8129 26 7 0.8349 -4.3943 -0.4718 27 7 0.1033 -3.9873 0.5022 28 7 0.4466 -2.7937 0.8486 29 1 -0.3633 0.0886 1.0238 30 1 -0.3633 0.8423 -0.5887 31 1 -0.3633 -0.9311 -0.4353 32 1 0.6632 2.4903 0.4754 33 1 0.4201 4.6763 -0.3126 34 1 2.7724 6.0795 -1.0017 35 1 2.0028 5.5042 -2.5000 36 1 1.9725 8.1987 -2.4617 37 1 1.8757 11.3291 -3.6157 38 1 4.1329 2.1320 0.0010 39 1 5.3603 -0.0002 0.0024 40 1 4.1321 -2.1314 0.0136 41 1 2.4374 -3.5511 -1.5990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554345901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:44 Heat of formation + Delta-G solvation = 94.610628 kcal Electronic energy + Delta-G solvation = -28292.565520 eV Core-core repulsion = 24018.052157 eV Total energy + Delta-G solvation = -4274.513364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.55404 -41.09743 -39.51874 -38.32474 -35.96377 -34.79790 -34.59696 -33.84014 -32.84853 -32.33142 -31.47366 -29.96587 -27.93289 -27.21833 -25.28980 -24.63471 -23.51718 -22.78629 -21.79515 -21.02150 -19.80296 -18.95334 -18.79171 -18.12247 -17.11703 -16.76754 -16.39752 -16.23740 -15.88740 -15.80641 -15.30583 -14.94882 -14.80048 -14.49326 -14.17658 -14.12314 -13.92045 -13.72034 -13.60047 -13.10399 -12.90139 -12.68169 -12.33324 -12.17828 -12.14264 -12.00891 -11.70478 -11.56577 -11.40698 -11.19162 -10.84139 -10.67774 -10.52246 -10.39999 -10.25623 -9.71997 -9.17351 -9.12112 -8.74897 -8.49068 -8.18995 -6.59555 -4.01886 0.13954 0.72591 0.94901 1.40409 1.89293 2.35591 2.85034 3.05778 3.17355 3.22272 3.23711 3.63971 3.72235 3.93319 4.09038 4.14241 4.22997 4.38144 4.47855 4.63781 4.74662 4.89228 4.91843 5.01716 5.02954 5.08849 5.18151 5.20007 5.64653 5.66234 5.69131 5.79167 5.81857 5.83838 5.92081 5.96004 6.13665 6.45522 6.52301 6.68405 7.38432 7.81126 7.83275 8.02633 8.33739 8.38188 8.96162 9.29560 9.76837 10.57043 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.027471 B = 0.001760 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.022134 B =15906.303688 C =16616.081140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C 0.190 3.810 4 N -0.685 5.685 5 C 0.706 3.294 6 O -0.578 6.578 7 N -0.714 5.714 8 C 0.127 3.873 9 C 0.425 3.575 10 O -0.598 6.598 11 N -0.546 5.546 12 C -0.307 4.307 13 H 0.106 0.894 14 C 0.027 3.973 15 N -0.893 5.893 16 Si 0.934 3.066 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.097 4.097 21 C -0.088 4.088 22 C -0.121 4.121 23 C 0.126 3.874 24 N -0.324 5.324 25 C 0.231 3.769 26 N -0.335 5.335 27 N -0.042 5.042 28 N -0.071 5.071 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.411 0.589 33 H 0.410 0.590 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.396 0.604 37 H 0.275 0.725 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 -21.900 4.515 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C 0.093 3.907 4 N -0.333 5.333 5 C 0.406 3.594 6 O -0.455 6.455 7 N -0.371 5.371 8 C -0.001 4.001 9 C 0.211 3.789 10 O -0.485 6.485 11 N -0.180 5.180 12 C -0.436 4.436 13 H 0.124 0.876 14 C -0.176 4.176 15 N -0.533 5.533 16 Si 0.760 3.240 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.193 1.193 20 C -0.117 4.117 21 C -0.108 4.108 22 C -0.143 4.143 23 C 0.034 3.966 24 N -0.115 5.115 25 C -0.066 4.066 26 N -0.184 5.184 27 N -0.037 5.037 28 N -0.056 5.056 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.230 0.770 37 H 0.085 0.915 38 H 0.174 0.826 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 5.307 -22.301 5.030 23.469 hybrid contribution -0.055 1.432 -0.396 1.487 sum 5.253 -20.868 4.633 22.012 Atomic orbital electron populations 1.20767 0.89669 1.03371 1.03467 1.19459 0.96889 0.90064 1.02868 1.17036 0.90975 0.83514 0.99201 1.42580 1.26826 1.09026 1.54855 1.15777 0.84233 0.80033 0.79371 1.90912 1.20246 1.82724 1.51630 1.44787 1.23150 1.11103 1.58030 1.20873 0.96895 0.84811 0.97528 1.19686 0.88760 0.84544 0.85927 1.90502 1.26997 1.82575 1.48447 1.41780 1.19895 1.10132 1.46236 1.19730 1.00935 0.90053 1.32878 0.87627 1.25341 0.97253 0.99049 0.96006 1.69612 1.22627 1.26985 1.34041 0.85800 0.80273 0.80106 0.77795 1.20214 1.20746 1.19298 1.21675 0.92503 1.00317 0.97246 1.20945 1.00577 0.90560 0.98701 1.20974 0.90703 0.99899 1.02698 1.16905 0.89988 0.80854 1.08804 1.48936 1.25613 1.12874 1.24070 1.27539 0.99517 0.83108 0.96438 1.74495 1.06652 1.26041 1.11209 1.78092 1.16606 1.02988 1.06012 1.82766 1.00936 1.09116 1.12826 0.89786 0.90661 0.91585 0.75219 0.75209 0.89613 0.89660 0.76987 0.91501 0.82645 0.84038 0.84856 0.74537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 8.60 36.01 0.31 -0.67 16 2 C -0.09 -0.79 5.91 -104.26 -0.62 -1.41 16 3 C 0.19 1.88 6.29 -83.71 -0.53 1.36 16 4 N -0.69 -7.00 4.79 -14.24 -0.07 -7.07 16 5 C 0.71 9.58 8.41 -86.92 -0.73 8.85 16 6 O -0.58 -9.23 13.75 5.29 0.07 -9.16 16 7 N -0.71 -10.35 5.53 -66.42 -0.37 -10.71 16 8 C 0.13 2.10 6.15 -5.20 -0.03 2.07 16 9 C 0.43 9.11 7.85 -10.99 -0.09 9.02 16 10 O -0.60 -14.44 15.24 5.55 0.08 -14.35 16 11 N -0.55 -12.85 5.29 -10.97 -0.06 -12.91 16 12 C -0.31 -8.02 9.68 -14.94 -0.14 -8.17 16 13 H 0.11 2.89 7.16 -52.49 -0.38 2.51 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 15 N -0.89 -23.04 13.05 55.50 0.72 -22.32 16 16 Si 0.93 19.92 29.55 -169.99 -5.02 14.89 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 C -0.10 -0.93 8.69 -39.36 -0.34 -1.27 16 21 C -0.09 -0.61 10.03 -39.64 -0.40 -1.01 16 22 C -0.12 -0.77 9.70 -39.37 -0.38 -1.15 16 23 C 0.13 1.04 6.28 -83.60 -0.53 0.51 16 24 N -0.32 -2.83 3.05 -11.76 -0.04 -2.87 16 25 C 0.23 1.63 12.58 -90.16 -1.13 0.50 16 26 N -0.33 -3.47 12.15 29.64 0.36 -3.11 16 27 N -0.04 -0.50 13.39 60.35 0.81 0.30 16 28 N -0.07 -0.80 12.28 60.35 0.74 -0.06 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.60 7.43 -51.93 -0.39 0.21 16 31 H 0.07 0.63 6.60 -51.92 -0.34 0.28 16 32 H 0.41 3.25 7.96 -40.82 -0.32 2.93 16 33 H 0.41 5.78 7.45 -40.82 -0.30 5.48 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.40 8.94 7.90 -40.82 -0.32 8.62 16 37 H 0.28 6.71 8.31 -40.82 -0.34 6.38 16 38 H 0.16 1.73 6.19 -52.49 -0.32 1.40 16 39 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 40 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 41 H 0.24 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -32.69 362.67 -6.05 -38.74 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -4.05 Total: 13.95 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -4.70 Total: 9.22 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 2.10 Total: -58.76 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.16 Total: -23.51 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.69 -6.05 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554345901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.349 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds