Wall clock time and date at job start Wed Apr 1 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38775 * 120.06373 * 2 1 4 4 N 1.39947 * 120.04151 * 359.95033 * 3 2 1 5 5 C 1.34776 * 120.00295 * 214.60916 * 4 3 2 6 6 O 1.21586 * 119.99791 * 355.75749 * 5 4 3 7 7 N 1.34778 * 119.99887 * 175.76079 * 5 4 3 8 8 C 1.46496 * 120.00011 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.47272 * 179.97438 * 8 7 5 10 10 O 1.21294 * 120.00265 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.37090 * 120.00387 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00133 * 0.02562 * 12 11 9 14 14 C 1.38952 * 120.00407 * 180.02562 * 12 11 9 15 15 N 1.31416 * 119.99549 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00349 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46901 * 90.00028 * 16 14 12 18 18 H 1.48495 * 109.47092 * 210.00276 * 16 14 12 19 19 H 1.48502 * 109.46945 * 329.99790 * 16 14 12 20 20 C 1.38887 * 119.92605 * 179.97438 * 3 2 1 21 21 C 1.38179 * 120.05577 * 359.97438 * 20 3 2 22 22 C 1.38147 * 120.13835 * 359.72529 * 21 20 3 23 23 C 1.38675 * 120.06812 * 179.97438 * 2 1 3 24 24 N 1.40259 * 120.03372 * 0.02773 * 23 2 1 25 25 C 1.35067 * 127.39336 * 130.69127 * 24 23 2 26 26 N 1.30733 * 107.27732 * 179.97438 * 25 24 23 27 27 N 1.28430 * 110.64602 * 359.97438 * 26 25 24 28 28 N 1.28942 * 110.20303 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47141 * 274.94404 * 1 2 3 30 30 H 1.08999 * 109.47123 * 34.94900 * 1 2 3 31 31 H 1.09011 * 109.46701 * 154.94543 * 1 2 3 32 32 H 0.97001 * 119.99729 * 34.60586 * 4 3 2 33 33 H 0.96997 * 119.99979 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.46912 * 299.99910 * 8 7 5 35 35 H 1.09004 * 109.47379 * 59.99393 * 8 7 5 36 36 H 0.97003 * 119.99270 * 0.02562 * 11 9 8 37 37 H 0.97000 * 119.99867 * 179.97438 * 15 14 12 38 38 H 1.08000 * 119.97268 * 180.02562 * 20 3 2 39 39 H 1.08005 * 119.93144 * 180.02562 * 21 20 3 40 40 H 1.07993 * 119.96768 * 180.30000 * 22 21 20 41 41 H 1.08000 * 126.36382 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2022 1.2011 0.0000 4 7 1.5047 2.4143 -0.0011 5 6 2.0021 3.4771 -0.6641 6 8 3.0929 3.4054 -1.1963 7 7 1.2904 4.6193 -0.7370 8 6 1.8308 5.7743 -1.4581 9 6 0.8469 6.9138 -1.3909 10 8 -0.2023 6.7749 -0.7984 11 7 1.1332 8.0876 -1.9882 12 6 0.2379 9.1240 -1.9275 13 1 -0.6967 9.0001 -1.4006 14 6 0.5329 10.3340 -2.5437 15 7 1.6699 10.4846 -3.1852 16 14 -0.6867 11.7464 -2.4604 17 1 -0.4049 12.5735 -1.2597 18 1 -0.5581 12.5840 -3.6798 19 1 -2.0667 11.2044 -2.3755 20 6 3.5911 1.1977 0.0005 21 6 4.2803 0.0001 0.0016 22 6 3.5907 -1.1970 0.0079 23 6 2.2018 -1.2001 0.0005 24 7 1.5027 -2.4161 0.0005 25 6 1.7007 -3.4760 -0.8129 26 7 0.8349 -4.3943 -0.4718 27 7 0.1033 -3.9873 0.5022 28 7 0.4466 -2.7937 0.8486 29 1 -0.3633 0.0886 1.0238 30 1 -0.3633 0.8423 -0.5887 31 1 -0.3633 -0.9311 -0.4353 32 1 0.6632 2.4903 0.4754 33 1 0.4201 4.6763 -0.3126 34 1 2.7724 6.0795 -1.0017 35 1 2.0028 5.5042 -2.5000 36 1 1.9725 8.1987 -2.4617 37 1 1.8757 11.3291 -3.6157 38 1 4.1329 2.1320 0.0010 39 1 5.3603 -0.0002 0.0024 40 1 4.1321 -2.1314 0.0136 41 1 2.4374 -3.5511 -1.5990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554345901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:43 Heat of formation + Delta-G solvation = 71.516659 kcal Electronic energy + Delta-G solvation = -28293.566950 eV Core-core repulsion = 24018.052157 eV Total energy + Delta-G solvation = -4275.514793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.25183 -41.99019 -40.57508 -39.85669 -36.81718 -36.22612 -35.58354 -35.24624 -33.57933 -33.36747 -33.04438 -30.75825 -29.12578 -28.08299 -26.45312 -25.88795 -24.26595 -23.58700 -22.47507 -21.96058 -21.39305 -20.20669 -19.79887 -19.60027 -17.94999 -17.53559 -17.44380 -17.18874 -16.95313 -16.75113 -16.49606 -16.27591 -16.09089 -15.81592 -15.48216 -15.19033 -15.01125 -14.50752 -14.43534 -13.98281 -13.81470 -13.70132 -13.61109 -13.54277 -13.29042 -12.91587 -12.81657 -12.67738 -12.45592 -12.28644 -12.13405 -12.11804 -11.57930 -11.57012 -11.50672 -11.26844 -10.56579 -10.30723 -10.08938 -9.81994 -9.24619 -8.51318 -6.01129 -0.51032 0.09130 0.28071 0.77517 1.20488 1.35721 1.36338 1.44361 1.55910 1.86187 1.94102 2.27640 2.51056 2.91695 3.16288 3.17872 3.26908 3.55133 3.61053 3.74378 3.82173 4.08823 4.16824 4.22416 4.28270 4.35099 4.43547 4.45071 4.45597 4.52975 4.54518 4.97683 5.04829 5.10602 5.18930 5.20995 5.33870 5.38637 5.46441 5.76712 5.83916 5.92084 6.47865 6.78521 7.03837 7.29136 7.31252 7.44943 7.94700 8.65318 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.027471 B = 0.001760 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.022134 B =15906.303688 C =16616.081140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C 0.169 3.831 4 N -0.673 5.673 5 C 0.709 3.291 6 O -0.601 6.601 7 N -0.717 5.717 8 C 0.142 3.858 9 C 0.432 3.568 10 O -0.625 6.625 11 N -0.558 5.558 12 C -0.337 4.337 13 H 0.086 0.914 14 C -0.010 4.010 15 N -0.914 5.914 16 Si 0.995 3.005 17 H -0.271 1.271 18 H -0.273 1.273 19 H -0.271 1.271 20 C -0.110 4.110 21 C -0.080 4.080 22 C -0.102 4.102 23 C 0.117 3.883 24 N -0.324 5.324 25 C 0.250 3.750 26 N -0.361 5.361 27 N -0.066 5.066 28 N -0.094 5.094 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.421 0.579 33 H 0.412 0.588 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.400 0.600 37 H 0.280 0.720 38 H 0.138 0.862 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 -23.049 4.206 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C 0.073 3.927 4 N -0.321 5.321 5 C 0.410 3.590 6 O -0.481 6.481 7 N -0.373 5.373 8 C 0.014 3.986 9 C 0.219 3.781 10 O -0.514 6.514 11 N -0.194 5.194 12 C -0.466 4.466 13 H 0.104 0.896 14 C -0.210 4.210 15 N -0.554 5.554 16 Si 0.818 3.182 17 H -0.196 1.196 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.131 4.131 21 C -0.099 4.099 22 C -0.123 4.123 23 C 0.026 3.974 24 N -0.115 5.115 25 C -0.046 4.046 26 N -0.211 5.211 27 N -0.062 5.062 28 N -0.079 5.079 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.259 0.741 33 H 0.250 0.750 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.234 0.766 37 H 0.089 0.911 38 H 0.156 0.844 39 H 0.188 0.812 40 H 0.186 0.814 41 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges 6.694 -23.491 4.739 24.882 hybrid contribution -0.414 1.654 -0.285 1.729 sum 6.280 -21.837 4.454 23.155 Atomic orbital electron populations 1.20716 0.89712 1.02776 1.03650 1.19479 0.96973 0.90230 1.03026 1.17147 0.91302 0.83300 1.00967 1.42371 1.27108 1.08483 1.54175 1.15762 0.83782 0.80186 0.79298 1.90898 1.21212 1.83192 1.52755 1.44687 1.23344 1.11041 1.58272 1.20651 0.95638 0.83638 0.98703 1.20447 0.88870 0.84891 0.83901 1.90482 1.28539 1.83227 1.49102 1.41821 1.19853 1.10508 1.47194 1.19713 1.01144 0.91617 1.34132 0.89616 1.26091 0.98850 1.00802 0.95304 1.69672 1.23669 1.27736 1.34347 0.84894 0.77921 0.77196 0.78147 1.19613 1.19735 1.19562 1.21689 0.92419 1.00853 0.98179 1.21243 1.01925 0.89567 0.97175 1.21316 0.89779 1.01100 1.00094 1.17100 0.90755 0.80332 1.09200 1.48948 1.25200 1.13326 1.24029 1.28472 0.98811 0.81421 0.95935 1.74431 1.07677 1.27498 1.11451 1.78081 1.17595 1.03502 1.06997 1.82716 1.02169 1.09073 1.13979 0.89413 0.90473 0.92706 0.74068 0.74993 0.88299 0.88545 0.76608 0.91083 0.84423 0.81209 0.81442 0.69634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 8.60 71.24 0.61 -1.22 16 2 C -0.09 -1.55 5.91 -19.63 -0.12 -1.66 16 3 C 0.17 3.18 6.29 38.13 0.24 3.42 16 4 N -0.67 -13.39 4.79 -317.23 -1.52 -14.90 16 5 C 0.71 18.85 8.41 179.05 1.51 20.36 16 6 O -0.60 -18.83 13.75 -3.99 -0.05 -18.89 16 7 N -0.72 -20.43 5.53 -482.31 -2.67 -23.09 16 8 C 0.14 4.62 6.15 85.63 0.53 5.15 16 9 C 0.43 18.62 7.85 87.65 0.69 19.31 16 10 O -0.63 -30.57 15.24 -3.07 -0.05 -30.61 16 11 N -0.56 -26.66 5.29 -306.99 -1.62 -28.28 16 12 C -0.34 -17.93 9.68 84.04 0.81 -17.12 16 13 H 0.09 4.82 7.16 -2.91 -0.02 4.80 16 14 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 15 N -0.91 -47.12 13.05 21.66 0.28 -46.84 16 16 Si 0.99 40.71 29.55 68.60 2.03 42.73 16 17 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 18 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 C -0.11 -1.96 8.69 22.41 0.19 -1.77 16 21 C -0.08 -0.85 10.03 22.23 0.22 -0.63 16 22 C -0.10 -0.91 9.70 22.41 0.22 -0.69 16 23 C 0.12 1.65 6.28 38.05 0.24 1.89 16 24 N -0.32 -5.00 3.05 -191.12 -0.58 -5.58 16 25 C 0.25 2.82 12.58 180.19 2.27 5.09 16 26 N -0.36 -6.99 12.15 -60.13 -0.73 -7.72 16 27 N -0.07 -1.58 13.39 37.02 0.50 -1.09 16 28 N -0.09 -2.05 12.28 37.02 0.45 -1.60 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.20 7.43 -2.39 -0.02 1.18 16 31 H 0.05 1.03 6.60 -2.38 -0.02 1.01 16 32 H 0.42 6.49 7.96 -92.71 -0.74 5.75 16 33 H 0.41 11.54 7.45 -92.71 -0.69 10.85 16 34 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 36 H 0.40 18.25 7.90 -92.71 -0.73 17.52 16 37 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 38 H 0.14 2.98 6.19 -2.91 -0.02 2.96 16 39 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 40 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 41 H 0.29 -0.27 8.06 -2.91 -0.02 -0.29 16 Total: -1.00 -72.12 362.67 2.90 -69.22 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: -1.01 Total: 34.56 kcal Atomic # 6 Polarization: 24.22 SS G_CDS: 7.88 Total: 32.10 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -5.89 Total: -129.12 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -0.10 Total: -49.50 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Total: -72.12 2.90 -69.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554345901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.738 kcal (2) G-P(sol) polarization free energy of solvation -72.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds