Wall clock time and date at job start Wed Apr 1 2020 03:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38909 * 119.47912 * 2 1 4 4 C 1.36801 * 120.30379 * 179.97438 * 3 2 1 5 5 C 1.38688 * 119.63377 * 0.02562 * 4 3 2 6 6 S 1.76262 * 134.19162 * 179.97438 * 5 4 3 7 7 N 1.55998 * 97.56286 * 180.02562 * 6 5 4 8 8 C 1.29685 * 111.74481 * 359.97438 * 7 6 5 9 9 C 1.47381 * 121.83205 * 180.02562 * 8 7 6 10 10 O 1.21617 * 120.00037 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99775 * 0.02715 * 9 8 7 12 12 C 1.46500 * 119.99805 * 179.97438 * 11 9 8 13 13 C 1.53065 * 109.45413 * 84.79314 * 12 11 9 14 14 C 1.53192 * 109.29648 * 181.24177 * 13 12 11 15 15 N 1.46922 * 108.89269 * 305.57538 * 14 13 12 16 16 C 1.36942 * 120.62796 * 233.51528 * 15 14 13 17 17 H 1.08007 * 119.99636 * 151.83092 * 16 15 14 18 18 C 1.38806 * 120.00203 * 331.83144 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.08250 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07925 * 18 16 15 21 21 H 1.48503 * 109.47195 * 89.99708 * 20 18 16 22 22 H 1.48498 * 109.47355 * 210.00264 * 20 18 16 23 23 H 1.48504 * 109.46850 * 330.00278 * 20 18 16 24 24 C 1.46924 * 118.73925 * 53.53382 * 15 14 13 25 25 C 1.53049 * 109.45577 * 204.99994 * 12 11 9 26 26 C 1.40676 * 120.66682 * 0.28960 * 5 4 3 27 27 C 1.36329 * 119.48457 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47033 * 90.00335 * 1 2 3 29 29 H 1.09005 * 109.47045 * 209.99648 * 1 2 3 30 30 H 1.08994 * 109.47186 * 329.99373 * 1 2 3 31 31 H 1.08002 * 119.84663 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.17945 * 180.02562 * 4 3 2 33 33 H 0.96998 * 120.00301 * 0.02562 * 11 9 8 34 34 H 1.08992 * 109.46107 * 324.96879 * 12 11 9 35 35 H 1.09005 * 109.39523 * 61.36241 * 13 12 11 36 36 H 1.09004 * 109.62174 * 301.25928 * 13 12 11 37 37 H 1.09003 * 109.58615 * 185.71531 * 14 13 12 38 38 H 1.08998 * 109.58372 * 65.43477 * 14 13 12 39 39 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 40 40 H 1.09007 * 109.58325 * 66.18371 * 24 15 14 41 41 H 1.08996 * 109.58499 * 186.46256 * 24 15 14 42 42 H 1.09002 * 109.49883 * 58.66699 * 25 12 11 43 43 H 1.08993 * 109.49715 * 298.56552 * 25 12 11 44 44 H 1.08000 * 120.02139 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2093 0.0000 4 6 3.5585 1.2289 0.0005 5 6 4.2615 0.0334 0.0005 6 16 5.9737 -0.3850 0.0005 7 7 5.8061 -1.9359 -0.0002 8 6 4.5568 -2.2841 0.0001 9 6 4.1442 -3.6990 0.0001 10 8 2.9629 -3.9879 -0.0001 11 7 5.0761 -4.6727 0.0004 12 6 4.6660 -6.0791 0.0010 13 6 4.3974 -6.5324 -1.4361 14 6 3.9391 -7.9941 -1.4286 15 7 4.9372 -8.8020 -0.7148 16 6 5.4882 -9.9094 -1.3026 17 1 6.4829 -10.2282 -1.0276 18 6 4.7685 -10.6220 -2.2518 19 7 3.4667 -10.4555 -2.3522 20 14 5.6474 -11.8172 -3.3868 21 1 5.6774 -13.1635 -2.7607 22 1 4.9266 -11.8900 -4.6831 23 1 7.0373 -11.3483 -3.6189 24 6 5.3327 -8.3996 0.6418 25 6 5.7790 -6.9344 0.6111 26 6 3.5822 -1.1984 -0.0061 27 6 2.1780 -1.1867 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6396 2.1382 0.0004 32 1 4.0879 2.1703 0.0009 33 1 6.0184 -4.4423 0.0010 34 1 3.7566 -6.1919 0.5910 35 1 5.3124 -6.4410 -2.0215 36 1 3.6192 -5.9094 -1.8771 37 1 3.8440 -8.3526 -2.4536 38 1 2.9764 -8.0725 -0.9234 39 1 2.9637 -10.9537 -3.0152 40 1 4.4843 -8.5092 1.3174 41 1 6.1556 -9.0272 0.9838 42 1 5.9834 -6.5950 1.6266 43 1 6.6816 -6.8416 0.0073 44 1 1.6300 -2.1173 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590227628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:27 Heat of formation + Delta-G solvation = 33.955086 kcal Electronic energy + Delta-G solvation = -27094.021324 eV Core-core repulsion = 23330.878202 eV Total energy + Delta-G solvation = -3763.143122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.81589 -39.38020 -37.62659 -37.00290 -34.46951 -32.92307 -32.12730 -31.09438 -30.08801 -29.52304 -27.38001 -26.41271 -24.76157 -23.35287 -22.26593 -22.07149 -21.27382 -20.23872 -19.32104 -18.67979 -17.61304 -16.82913 -16.49409 -15.72544 -15.58454 -15.52177 -14.85844 -14.66188 -14.29799 -14.18534 -13.91931 -13.79164 -13.59270 -13.49831 -12.98565 -12.59262 -12.57445 -12.40203 -12.32674 -12.11740 -11.94807 -11.49194 -11.43885 -11.12435 -10.98519 -10.93269 -10.70524 -10.39897 -10.25438 -10.07513 -9.98938 -9.93429 -9.75643 -9.51889 -9.26234 -8.76380 -8.42741 -8.10474 -6.67356 -5.77713 -3.20634 0.08099 0.76467 1.04144 1.40946 1.49999 3.01950 3.17499 3.38503 3.40178 3.45446 3.47711 4.02096 4.36353 4.49943 4.50455 4.78233 4.88093 5.00098 5.09822 5.25903 5.30435 5.33684 5.41246 5.46104 5.59242 5.62509 5.70206 5.72956 5.79812 5.82949 6.02317 6.08079 6.22212 6.25144 6.32139 6.43847 6.50287 6.59934 6.66069 6.77426 6.89161 6.93937 7.37824 7.63500 7.69803 7.80619 8.24595 8.46174 9.21942 9.85202 10.41914 11.30974 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.002364 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.576810 B =11839.971438 C =12626.345982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.088 4.088 4 C -0.072 4.072 5 C -0.205 4.205 6 S 0.379 5.621 7 N -0.489 5.489 8 C 0.096 3.904 9 C 0.584 3.416 10 O -0.524 6.524 11 N -0.701 5.701 12 C 0.150 3.850 13 C -0.147 4.147 14 C 0.174 3.826 15 N -0.593 5.593 16 C -0.254 4.254 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.149 3.851 25 C -0.139 4.139 26 C -0.084 4.084 27 C -0.042 4.042 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.403 0.597 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.254 0.746 40 H 0.021 0.979 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 26.776 6.022 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.111 4.111 4 C -0.094 4.094 5 C -0.326 4.326 6 S 0.538 5.462 7 N -0.315 5.315 8 C -0.093 4.093 9 C 0.364 3.636 10 O -0.400 6.400 11 N -0.351 5.351 12 C 0.047 3.953 13 C -0.187 4.187 14 C 0.048 3.952 15 N -0.315 5.315 16 C -0.384 4.384 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.022 3.978 25 C -0.179 4.179 26 C -0.094 4.094 27 C -0.064 4.064 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.238 0.762 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.074 26.584 5.908 27.253 hybrid contribution -0.773 -0.844 -0.676 1.329 sum 0.301 25.740 5.232 26.268 Atomic orbital electron populations 1.20848 0.90243 1.03282 1.02864 1.19678 0.96889 0.92551 0.99680 1.20960 0.93634 0.97985 0.98551 1.19889 0.93771 0.95203 1.00518 1.24246 1.01532 0.97780 1.09008 1.81357 1.02520 0.94801 1.67491 1.71437 1.23676 1.16779 1.19623 1.22059 0.86457 0.96269 1.04491 1.17145 0.86040 0.82709 0.77668 1.90788 1.16641 1.82375 1.50177 1.46217 1.09640 1.06747 1.72531 1.21165 0.98596 0.77018 0.98526 1.22587 1.00942 1.00671 0.94518 1.20748 0.90117 0.84851 0.99480 1.44100 1.48326 1.28322 1.10780 1.19158 0.96779 1.03045 1.19378 0.91678 1.25061 0.94934 0.97997 1.01629 1.70031 1.04819 1.43763 1.35938 0.86312 0.79037 0.81001 0.80498 1.21375 1.21558 1.20516 1.20837 0.97626 0.91015 0.88336 1.22344 0.97849 0.98381 0.99317 1.19582 0.95176 0.89854 1.04797 1.20737 0.90821 0.99280 0.95583 0.90709 0.90898 0.91274 0.84810 0.84819 0.76190 0.89689 0.92598 0.92713 0.89227 0.96051 0.93578 0.96129 0.92251 0.92518 0.91739 0.83271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.98 36.01 0.36 -0.41 16 2 C -0.09 -0.79 5.84 -105.06 -0.61 -1.40 16 3 C -0.09 -0.66 9.63 -39.85 -0.38 -1.05 16 4 C -0.07 -0.58 10.03 -39.94 -0.40 -0.98 16 5 C -0.20 -2.18 6.73 -38.50 -0.26 -2.43 16 6 S 0.38 3.77 23.36 -107.50 -2.51 1.26 16 7 N -0.49 -6.36 10.49 28.24 0.30 -6.07 16 8 C 0.10 1.38 6.82 -81.99 -0.56 0.82 16 9 C 0.58 9.60 7.77 -12.54 -0.10 9.50 16 10 O -0.52 -9.80 14.68 5.26 0.08 -9.72 16 11 N -0.70 -11.06 5.07 -54.84 -0.28 -11.34 16 12 C 0.15 2.69 2.41 -67.87 -0.16 2.53 16 13 C -0.15 -2.99 5.66 -26.60 -0.15 -3.14 16 14 C 0.17 4.27 5.30 -3.71 -0.02 4.25 16 15 N -0.59 -14.91 3.00 -172.32 -0.52 -15.42 16 16 C -0.25 -6.98 9.58 -15.06 -0.14 -7.12 16 17 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -26.42 11.20 55.49 0.62 -25.80 16 20 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.15 3.10 6.52 -3.71 -0.02 3.07 16 25 C -0.14 -2.39 5.55 -26.61 -0.15 -2.54 16 26 C -0.08 -1.09 6.10 -105.09 -0.64 -1.73 16 27 C -0.04 -0.50 9.17 -39.45 -0.36 -0.87 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 30 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 33 H 0.40 5.69 8.04 -40.82 -0.33 5.36 16 34 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.15 1.94 6.64 -52.49 -0.35 1.60 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -31.75 372.39 -11.41 -43.15 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.99 Total: 3.08 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -3.69 Total: -1.52 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.12 Total: -58.63 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.51 Total: 1.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.75 -11.41 -43.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590227628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.109 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds