Wall clock time and date at job start Wed Apr 1 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38909 * 119.47912 * 2 1 4 4 C 1.36801 * 120.30379 * 179.97438 * 3 2 1 5 5 C 1.38688 * 119.63377 * 0.02562 * 4 3 2 6 6 S 1.76262 * 134.19162 * 179.97438 * 5 4 3 7 7 N 1.55998 * 97.56286 * 180.02562 * 6 5 4 8 8 C 1.29685 * 111.74481 * 359.97438 * 7 6 5 9 9 C 1.47381 * 121.83205 * 180.02562 * 8 7 6 10 10 O 1.21617 * 120.00037 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99775 * 0.02715 * 9 8 7 12 12 C 1.46500 * 119.99805 * 179.97438 * 11 9 8 13 13 C 1.53065 * 109.45413 * 84.79314 * 12 11 9 14 14 C 1.53192 * 109.29648 * 181.24177 * 13 12 11 15 15 N 1.46922 * 108.89269 * 305.57538 * 14 13 12 16 16 C 1.36942 * 120.62796 * 233.51528 * 15 14 13 17 17 H 1.08007 * 119.99636 * 151.83092 * 16 15 14 18 18 C 1.38806 * 120.00203 * 331.83144 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.08250 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07925 * 18 16 15 21 21 H 1.48503 * 109.47195 * 89.99708 * 20 18 16 22 22 H 1.48498 * 109.47355 * 210.00264 * 20 18 16 23 23 H 1.48504 * 109.46850 * 330.00278 * 20 18 16 24 24 C 1.46924 * 118.73925 * 53.53382 * 15 14 13 25 25 C 1.53049 * 109.45577 * 204.99994 * 12 11 9 26 26 C 1.40676 * 120.66682 * 0.28960 * 5 4 3 27 27 C 1.36329 * 119.48457 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47033 * 90.00335 * 1 2 3 29 29 H 1.09005 * 109.47045 * 209.99648 * 1 2 3 30 30 H 1.08994 * 109.47186 * 329.99373 * 1 2 3 31 31 H 1.08002 * 119.84663 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.17945 * 180.02562 * 4 3 2 33 33 H 0.96998 * 120.00301 * 0.02562 * 11 9 8 34 34 H 1.08992 * 109.46107 * 324.96879 * 12 11 9 35 35 H 1.09005 * 109.39523 * 61.36241 * 13 12 11 36 36 H 1.09004 * 109.62174 * 301.25928 * 13 12 11 37 37 H 1.09003 * 109.58615 * 185.71531 * 14 13 12 38 38 H 1.08998 * 109.58372 * 65.43477 * 14 13 12 39 39 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 40 40 H 1.09007 * 109.58325 * 66.18371 * 24 15 14 41 41 H 1.08996 * 109.58499 * 186.46256 * 24 15 14 42 42 H 1.09002 * 109.49883 * 58.66699 * 25 12 11 43 43 H 1.08993 * 109.49715 * 298.56552 * 25 12 11 44 44 H 1.08000 * 120.02139 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2093 0.0000 4 6 3.5585 1.2289 0.0005 5 6 4.2615 0.0334 0.0005 6 16 5.9737 -0.3850 0.0005 7 7 5.8061 -1.9359 -0.0002 8 6 4.5568 -2.2841 0.0001 9 6 4.1442 -3.6990 0.0001 10 8 2.9629 -3.9879 -0.0001 11 7 5.0761 -4.6727 0.0004 12 6 4.6660 -6.0791 0.0010 13 6 4.3974 -6.5324 -1.4361 14 6 3.9391 -7.9941 -1.4286 15 7 4.9372 -8.8020 -0.7148 16 6 5.4882 -9.9094 -1.3026 17 1 6.4829 -10.2282 -1.0276 18 6 4.7685 -10.6220 -2.2518 19 7 3.4667 -10.4555 -2.3522 20 14 5.6474 -11.8172 -3.3868 21 1 5.6774 -13.1635 -2.7607 22 1 4.9266 -11.8900 -4.6831 23 1 7.0373 -11.3483 -3.6189 24 6 5.3327 -8.3996 0.6418 25 6 5.7790 -6.9344 0.6111 26 6 3.5822 -1.1984 -0.0061 27 6 2.1780 -1.1867 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6396 2.1382 0.0004 32 1 4.0879 2.1703 0.0009 33 1 6.0184 -4.4423 0.0010 34 1 3.7566 -6.1919 0.5910 35 1 5.3124 -6.4410 -2.0215 36 1 3.6192 -5.9094 -1.8771 37 1 3.8440 -8.3526 -2.4536 38 1 2.9764 -8.0725 -0.9234 39 1 2.9637 -10.9537 -3.0152 40 1 4.4843 -8.5092 1.3174 41 1 6.1556 -9.0272 0.9838 42 1 5.9834 -6.5950 1.6266 43 1 6.6816 -6.8416 0.0073 44 1 1.6300 -2.1173 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590227628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:26 Heat of formation + Delta-G solvation = 14.808645 kcal Electronic energy + Delta-G solvation = -27094.851576 eV Core-core repulsion = 23330.878202 eV Total energy + Delta-G solvation = -3763.973374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.80080 -40.51763 -39.02526 -38.13858 -36.10858 -34.00604 -33.53693 -31.94235 -31.79015 -31.28376 -28.07987 -27.71015 -26.41802 -24.32893 -23.96615 -23.42619 -22.29588 -21.51111 -20.92159 -19.55695 -18.96412 -18.44504 -17.57015 -16.96508 -16.69241 -16.65550 -16.35594 -15.79185 -15.50581 -15.38761 -15.30088 -15.06781 -14.85799 -14.66823 -14.46914 -14.22638 -14.11349 -13.23617 -13.16394 -13.05341 -13.01464 -12.82268 -12.72476 -12.60973 -12.57638 -12.39065 -12.16600 -12.09938 -11.88677 -11.75328 -11.59780 -11.46366 -11.02283 -10.78850 -10.60022 -10.15009 -9.97661 -8.88772 -8.73173 -7.89135 -5.35417 -0.81779 -0.00289 0.25987 0.54370 0.60226 1.46087 1.47865 1.57630 1.91664 1.97271 2.50326 2.57323 3.16099 3.27003 3.50799 3.64244 3.77417 3.85419 3.93764 4.00644 4.20386 4.26764 4.33954 4.36616 4.42095 4.61884 4.70441 4.72956 4.76294 4.80928 4.84924 4.96526 4.98356 5.01173 5.08252 5.12355 5.17808 5.27029 5.27890 5.39774 5.43129 5.56090 5.62101 5.66986 5.83357 6.36913 6.39139 7.00103 7.11645 7.82100 8.35105 9.18206 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.002364 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.576810 B =11839.971438 C =12626.345982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.082 4.082 4 C -0.064 4.064 5 C -0.219 4.219 6 S 0.447 5.553 7 N -0.506 5.506 8 C 0.066 3.934 9 C 0.582 3.418 10 O -0.557 6.557 11 N -0.694 5.694 12 C 0.161 3.839 13 C -0.131 4.131 14 C 0.185 3.815 15 N -0.610 5.610 16 C -0.263 4.263 17 H 0.073 0.927 18 C -0.054 4.054 19 N -0.937 5.937 20 Si 0.969 3.031 21 H -0.283 1.283 22 H -0.295 1.295 23 H -0.269 1.269 24 C 0.143 3.857 25 C -0.122 4.122 26 C -0.108 4.108 27 C -0.077 4.077 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.175 0.825 32 H 0.172 0.828 33 H 0.414 0.586 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.056 0.944 38 H -0.006 1.006 39 H 0.250 0.750 40 H 0.016 0.984 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 30.326 6.580 31.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C -0.105 4.105 4 C -0.086 4.086 5 C -0.340 4.340 6 S 0.607 5.393 7 N -0.335 5.335 8 C -0.121 4.121 9 C 0.364 3.636 10 O -0.435 6.435 11 N -0.344 5.344 12 C 0.057 3.943 13 C -0.171 4.171 14 C 0.058 3.942 15 N -0.333 5.333 16 C -0.393 4.393 17 H 0.090 0.910 18 C -0.249 4.249 19 N -0.583 5.583 20 Si 0.797 3.203 21 H -0.209 1.209 22 H -0.221 1.221 23 H -0.193 1.193 24 C 0.017 3.983 25 C -0.162 4.162 26 C -0.118 4.118 27 C -0.099 4.099 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.192 0.808 32 H 0.190 0.810 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.012 0.988 39 H 0.059 0.941 40 H 0.034 0.966 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.847 30.164 6.495 30.987 hybrid contribution -1.327 -1.773 -0.796 2.353 sum 1.520 28.392 5.698 28.998 Atomic orbital electron populations 1.20923 0.88713 1.04112 1.03539 1.20022 0.98123 0.92295 0.97728 1.21428 0.93750 0.98606 0.96670 1.20431 0.94167 0.95593 0.98397 1.24534 1.01883 0.97901 1.09695 1.80995 1.01387 0.92081 1.64801 1.71140 1.23423 1.19649 1.19274 1.21691 0.87332 0.95131 1.07915 1.17528 0.85549 0.83918 0.76619 1.90766 1.18005 1.83233 1.51493 1.45956 1.10191 1.05572 1.72698 1.20817 0.98499 0.78655 0.96319 1.22328 1.00509 0.97696 0.96563 1.20447 0.89351 0.87227 0.97160 1.44344 1.48202 1.28139 1.12629 1.19545 0.97089 1.03273 1.19365 0.90969 1.25875 0.95531 1.00174 1.03302 1.70199 1.06335 1.45155 1.36643 0.85255 0.78169 0.78841 0.78048 1.20938 1.22095 1.19337 1.21024 0.97714 0.93505 0.86019 1.22151 0.97233 0.95446 1.01364 1.19682 0.95564 0.90514 1.06077 1.20691 0.90863 0.99637 0.98738 0.90002 0.91902 0.88634 0.80799 0.81032 0.74918 0.91508 0.92379 0.93356 0.92535 0.98821 0.94106 0.96637 0.91254 0.89176 0.90951 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.98 71.24 0.71 -0.67 16 2 C -0.08 -1.35 5.84 -20.15 -0.12 -1.47 16 3 C -0.08 -0.92 9.63 22.09 0.21 -0.71 16 4 C -0.06 -0.78 10.03 22.04 0.22 -0.56 16 5 C -0.22 -4.19 6.73 22.97 0.15 -4.04 16 6 S 0.45 7.83 23.36 -56.49 -1.32 6.51 16 7 N -0.51 -12.69 10.49 -64.56 -0.68 -13.37 16 8 C 0.07 1.93 6.82 43.85 0.30 2.22 16 9 C 0.58 19.88 7.77 86.65 0.67 20.55 16 10 O -0.56 -22.30 14.68 -4.09 -0.06 -22.36 16 11 N -0.69 -22.02 5.07 -445.66 -2.26 -24.28 16 12 C 0.16 5.88 2.41 45.03 0.11 5.99 16 13 C -0.13 -5.53 5.66 30.68 0.17 -5.36 16 14 C 0.18 9.54 5.30 86.36 0.46 9.99 16 15 N -0.61 -31.39 3.00 -699.10 -2.09 -33.48 16 16 C -0.26 -14.61 9.58 84.03 0.81 -13.81 16 17 H 0.07 3.84 7.89 -2.91 -0.02 3.82 16 18 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 19 N -0.94 -57.16 11.20 21.65 0.24 -56.92 16 20 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 C 0.14 5.94 6.52 86.36 0.56 6.50 16 25 C -0.12 -4.07 5.55 30.67 0.17 -3.89 16 26 C -0.11 -2.83 6.10 -20.17 -0.12 -2.96 16 27 C -0.08 -1.91 9.17 22.36 0.21 -1.71 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.87 8.07 -2.38 -0.02 0.85 16 30 H 0.09 0.63 8.08 -2.39 -0.02 0.61 16 31 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 32 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.41 11.36 8.04 -92.71 -0.75 10.61 16 34 H 0.07 2.71 7.58 -2.39 -0.02 2.70 16 35 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.06 3.27 6.06 -2.39 -0.01 3.26 16 38 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 42 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.12 3.60 6.64 -2.91 -0.02 3.58 16 Total: -1.00 -73.07 372.39 1.08 -71.99 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.29 Total: 16.87 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 4.93 Total: 7.45 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -4.79 Total: -128.04 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.06 Total: -22.36 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 7.83 SS G_CDS: -1.32 Total: 6.51 kcal Total: -73.07 1.08 -71.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590227628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.798 kcal (2) G-P(sol) polarization free energy of solvation -73.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds