Wall clock time and date at job start Wed Apr 1 2020 03:48:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.31289 * 118.86685 * 2 1
4 4 C 1.34082 * 120.88126 * 180.02562 * 3 2 1
5 5 S 1.75399 * 131.29417 * 180.02562 * 4 3 2
6 6 C 1.76332 * 92.45543 * 179.55004 * 5 4 3
7 7 C 1.32533 * 111.35651 * 0.39398 * 6 5 4
8 8 C 1.39094 * 119.10250 * 359.74849 * 4 3 2
9 9 C 1.41833 * 117.87409 * 0.43875 * 8 4 3
10 10 N 1.38317 * 120.63732 * 179.84591 * 9 8 4
11 11 C 1.47900 * 111.00368 * 216.46249 * 10 9 8
12 12 C 1.53988 * 107.06062 * 214.15304 * 11 10 9
13 13 C 1.54587 * 105.14221 * 1.22778 * 12 11 10
14 14 O 1.42906 * 110.72382 * 263.41873 * 13 12 11
15 15 C 1.50694 * 110.72832 * 140.31445 * 13 12 11
16 16 H 1.08000 * 120.00238 * 241.45457 * 15 13 12
17 17 C 1.37887 * 120.00007 * 61.45217 * 15 13 12
18 18 N 1.31506 * 119.99876 * 0.02562 * 17 15 13
19 19 Si 1.86801 * 119.99972 * 180.02562 * 17 15 13
20 20 H 1.48505 * 109.47023 * 359.97438 * 19 17 15
21 21 H 1.48497 * 109.47208 * 120.00048 * 19 17 15
22 22 H 1.48502 * 109.47042 * 240.00117 * 19 17 15
23 23 C 1.48542 * 111.00249 * 99.06773 * 10 9 8
24 24 N 1.32088 * 118.86048 * 180.02562 * 2 1 3
25 25 C 1.52876 * 110.19243 * 179.51223 * 7 6 5
26 26 C 1.54131 * 104.90539 * 342.43062 * 25 7 6
27 27 C 1.52607 * 138.11807 * 179.69493 * 6 5 4
28 28 H 1.09004 * 109.46824 * 269.97580 * 1 2 3
29 29 H 1.08994 * 109.46935 * 29.97502 * 1 2 3
30 30 H 1.09000 * 109.46838 * 149.97839 * 1 2 3
31 31 H 1.09006 * 109.91507 * 94.80177 * 11 10 9
32 32 H 1.08997 * 109.91814 * 333.51152 * 11 10 9
33 33 H 1.09002 * 110.30586 * 120.14455 * 12 11 10
34 34 H 1.08999 * 110.30851 * 242.20889 * 12 11 10
35 35 H 0.96694 * 114.00225 * 298.54887 * 14 13 12
36 36 H 0.97001 * 120.00180 * 180.02562 * 18 17 15
37 37 H 1.08993 * 110.66614 * 41.28750 * 23 10 9
38 38 H 1.09001 * 110.66327 * 278.15656 * 23 10 9
39 39 H 1.08999 * 110.35318 * 101.28496 * 25 7 6
40 40 H 1.09002 * 110.35821 * 223.56929 * 25 7 6
41 41 H 1.09003 * 111.01119 * 268.51326 * 26 25 7
42 42 H 1.08998 * 111.04529 * 144.65638 * 26 25 7
43 43 H 1.09006 * 110.36428 * 317.08217 * 27 6 5
44 44 H 1.08998 * 110.36325 * 79.28693 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1408 1.1498 0.0000
4 6 3.4808 1.1969 -0.0005
5 16 4.5913 2.5546 -0.0001
6 6 6.0028 1.4977 0.0125
7 6 5.6493 0.2204 0.0075
8 6 4.1997 0.0061 0.0043
9 6 3.4690 -1.2095 -0.0001
10 7 4.1259 -2.4268 0.0011
11 6 3.4037 -3.4197 -0.8235
12 6 3.5964 -4.7914 -0.1508
13 6 4.4397 -4.5065 1.1130
14 8 5.8254 -4.7494 0.8617
15 6 3.9570 -5.3364 2.2746
16 1 3.5786 -4.8531 3.1632
17 6 3.9985 -6.7127 2.2029
18 7 4.4597 -7.3012 1.1210
19 14 3.3995 -7.7415 3.6425
20 1 2.9335 -6.8454 4.7312
21 1 2.2775 -8.6074 3.1992
22 1 4.5118 -8.5893 4.1418
23 6 4.1809 -3.0007 1.3701
24 7 2.1446 -1.1568 -0.0005
25 6 6.8915 -0.6708 0.0064
26 6 8.0421 0.2534 -0.4382
27 6 7.5229 1.6323 0.0151
28 1 -0.3633 -0.0004 1.0277
29 1 -0.3633 0.8902 -0.5134
30 1 -0.3633 -0.8898 -0.5142
31 1 3.8196 -3.4385 -1.8310
32 1 2.3434 -3.1703 -0.8613
33 1 2.6313 -5.2158 0.1261
34 1 4.1292 -5.4686 -0.8183
35 1 6.0270 -5.6639 0.6207
36 1 4.4885 -8.2695 1.0704
37 1 3.2319 -2.8561 1.8862
38 1 5.0003 -2.5611 1.9388
39 1 7.0813 -1.0577 1.0075
40 1 6.7691 -1.4910 -0.7010
41 1 8.1733 0.2215 -1.5198
42 1 8.9698 -0.0025 0.0737
43 1 7.8365 2.4052 -0.6866
44 1 7.8815 1.8635 1.0181
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000591974878.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:48:10
Heat of formation + Delta-G solvation = 35.799075 kcal
Electronic energy + Delta-G solvation = -28553.938402 eV
Core-core repulsion = 24790.875241 eV
Total energy + Delta-G solvation = -3763.063161 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.125 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.20263 -38.69155 -38.40126 -35.24991 -34.02360 -32.55307 -32.18128 -30.39074
-29.30917 -28.25531 -28.10167 -26.64808 -25.08937 -24.09147 -22.36409 -21.07883
-20.55090 -19.67379 -19.28468 -17.94769 -17.48290 -16.90328 -16.17661 -15.73699
-15.24441 -15.15647 -14.96658 -14.67604 -13.98500 -13.76684 -13.31767 -12.99587
-12.95837 -12.84271 -12.70816 -12.56196 -12.41286 -12.15651 -12.11413 -11.85961
-11.57402 -11.36686 -11.18143 -11.11591 -10.98836 -10.88042 -10.86709 -10.77008
-10.48365 -10.44062 -10.17302 -9.91044 -9.31942 -9.20261 -8.74658 -8.65943
-8.32924 -8.12779 -7.81789 -6.27029 -4.35241 0.51158 0.96538 1.03056
1.85843 2.18346 3.18333 3.27408 3.31497 3.66137 3.83292 4.03108
4.26872 4.31840 4.45436 4.60287 4.83407 4.98562 5.00444 5.04287
5.23372 5.49623 5.51133 5.52743 5.59086 5.64554 5.73034 5.76423
5.80436 5.91164 5.92861 6.00490 6.11442 6.13752 6.20699 6.24878
6.36643 6.46340 6.51229 6.66465 6.86182 6.99387 7.16662 7.38183
7.43072 7.54764 7.74577 8.07156 8.15616 8.66945 9.33360 9.45416
10.80165
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.012766 B = 0.003850 C = 0.003202
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2192.724519 B = 7270.634327 C = 8742.353886
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.345 3.655
3 N -0.507 5.507
4 C 0.098 3.902
5 S 0.166 5.834
6 C -0.219 4.219
7 C -0.051 4.051
8 C -0.156 4.156
9 C 0.415 3.585
10 N -0.464 5.464
11 C 0.032 3.968
12 C -0.125 4.125
13 C 0.263 3.737
14 O -0.580 6.580
15 C -0.538 4.538
16 H 0.061 0.939
17 C 0.074 3.926
18 N -0.893 5.893
19 Si 0.899 3.101
20 H -0.272 1.272
21 H -0.282 1.282
22 H -0.282 1.282
23 C 0.069 3.931
24 N -0.553 5.553
25 C -0.057 4.057
26 C -0.119 4.119
27 C -0.038 4.038
28 H 0.086 0.914
29 H 0.084 0.916
30 H 0.087 0.913
31 H 0.066 0.934
32 H 0.064 0.936
33 H 0.066 0.934
34 H 0.070 0.930
35 H 0.380 0.620
36 H 0.267 0.733
37 H 0.057 0.943
38 H 0.077 0.923
39 H 0.086 0.914
40 H 0.091 0.909
41 H 0.074 0.926
42 H 0.083 0.917
43 H 0.074 0.926
44 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.496 15.435 -4.296 16.091
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.072 3.928
3 N -0.226 5.226
4 C -0.153 4.153
5 S 0.426 5.574
6 C -0.334 4.334
7 C -0.063 4.063
8 C -0.171 4.171
9 C 0.169 3.831
10 N -0.186 5.186
11 C -0.094 4.094
12 C -0.164 4.164
13 C 0.222 3.778
14 O -0.388 6.388
15 C -0.577 4.577
16 H 0.079 0.921
17 C -0.129 4.129
18 N -0.532 5.532
19 Si 0.727 3.273
20 H -0.197 1.197
21 H -0.208 1.208
22 H -0.207 1.207
23 C -0.055 4.055
24 N -0.273 5.273
25 C -0.096 4.096
26 C -0.157 4.157
27 C -0.077 4.077
28 H 0.105 0.895
29 H 0.103 0.897
30 H 0.106 0.894
31 H 0.084 0.916
32 H 0.082 0.918
33 H 0.085 0.915
34 H 0.089 0.911
35 H 0.229 0.771
36 H 0.077 0.923
37 H 0.076 0.924
38 H 0.096 0.904
39 H 0.104 0.896
40 H 0.109 0.891
41 H 0.093 0.907
42 H 0.102 0.898
43 H 0.093 0.907
44 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 0.918 17.627 -4.440 18.201
hybrid contribution -0.357 -2.832 0.841 2.976
sum 0.561 14.795 -3.599 15.236
Atomic orbital electron populations
1.20561 0.85399 1.04070 1.03959 1.23026 0.97768 0.82400 0.89560
1.67974 1.05896 1.30106 1.18644 1.23505 0.94517 0.96784 1.00465
1.83774 0.91637 1.03219 1.78767 1.25498 1.00168 0.96590 1.11140
1.20996 0.91569 0.94862 0.98864 1.19917 0.93743 0.93680 1.09805
1.20591 0.86211 0.92030 0.84271 1.62617 1.43937 0.99848 1.12220
1.23086 0.97275 0.92617 0.96463 1.22930 1.01809 0.92883 0.98792
1.19277 0.79935 0.87409 0.91185 1.86112 1.26319 1.34279 1.92074
1.21563 1.42853 0.91379 1.01873 0.92052 1.24962 0.94106 0.97790
0.96024 1.69726 1.46088 1.10364 1.26994 0.86420 0.78506 0.80044
0.82346 1.19690 1.20825 1.20748 1.23320 1.00320 0.96567 0.85314
1.68367 1.09900 1.30320 1.18699 1.21096 0.87982 0.97000 1.03522
1.22334 0.98280 0.93466 1.01669 1.20910 0.85850 0.98782 1.02177
0.89538 0.89732 0.89384 0.91598 0.91760 0.91550 0.91147 0.77050
0.92311 0.92442 0.90416 0.89560 0.89063 0.90692 0.89835 0.90738
0.89925
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.95 10.30 36.01 0.37 -0.58 16
2 C 0.34 5.64 7.64 -157.37 -1.20 4.44 16
3 N -0.51 -8.52 10.37 -9.68 -0.10 -8.63 16
4 C 0.10 1.64 7.67 -16.25 -0.12 1.51 16
5 S 0.17 2.19 23.23 -107.50 -2.50 -0.31 16
6 C -0.22 -2.88 7.24 -35.27 -0.26 -3.14 16
7 C -0.05 -0.79 6.60 -102.10 -0.67 -1.47 16
8 C -0.16 -2.77 6.07 -104.86 -0.64 -3.41 16
9 C 0.42 7.93 5.63 -154.52 -0.87 7.05 16
10 N -0.46 -9.24 5.19 -168.52 -0.87 -10.12 16
11 C 0.03 0.64 6.59 -2.76 -0.02 0.62 16
12 C -0.13 -2.82 5.26 -25.38 -0.13 -2.95 16
13 C 0.26 6.28 0.95 -89.92 -0.09 6.20 16
14 O -0.58 -14.34 13.10 -35.23 -0.46 -14.80 16
15 C -0.54 -14.03 8.14 -34.44 -0.28 -14.31 16
16 H 0.06 1.61 7.78 -52.49 -0.41 1.21 16
17 C 0.07 1.90 5.28 -17.82 -0.09 1.81 16
18 N -0.89 -23.04 11.00 55.43 0.61 -22.43 16
19 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16
20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
23 C 0.07 1.51 5.63 -1.89 -0.01 1.50 16
24 N -0.55 -10.19 8.66 -9.58 -0.08 -10.28 16
25 C -0.06 -0.79 6.82 -26.20 -0.18 -0.97 16
26 C -0.12 -1.19 7.13 -25.54 -0.18 -1.37 16
27 C -0.04 -0.37 6.82 -26.33 -0.18 -0.55 16
28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
30 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16
31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
32 H 0.06 1.27 6.59 -51.93 -0.34 0.93 16
33 H 0.07 1.58 7.84 -51.93 -0.41 1.17 16
34 H 0.07 1.64 7.99 -51.93 -0.41 1.23 16
35 H 0.38 9.53 7.46 45.56 0.34 9.87 16
36 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16
37 H 0.06 1.28 7.90 -51.93 -0.41 0.87 16
38 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16
39 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16
40 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16
41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
LS Contribution 369.63 15.07 5.57 5.57
Total: -1.00 -28.22 369.63 -12.84 -41.06
By element:
Atomic # 1 Polarization: 15.76 SS G_CDS: -5.43 Total: 10.34 kcal
Atomic # 6 Polarization: -1.07 SS G_CDS: -4.55 Total: -5.62 kcal
Atomic # 7 Polarization: -51.00 SS G_CDS: -0.45 Total: -51.45 kcal
Atomic # 8 Polarization: -14.34 SS G_CDS: -0.46 Total: -14.80 kcal
Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal
Atomic # 16 Polarization: 2.19 SS G_CDS: -2.50 Total: -0.31 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -28.22 -12.84 -41.06 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591974878.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.857 kcal
(2) G-P(sol) polarization free energy of solvation -28.217 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.640 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.799 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds