Wall clock time and date at job start Wed Apr 1 2020 03:48:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.31289 * 118.86685 * 2 1
4 4 C 1.34082 * 120.88126 * 180.02562 * 3 2 1
5 5 S 1.75399 * 131.29417 * 180.02562 * 4 3 2
6 6 C 1.76332 * 92.45543 * 179.55004 * 5 4 3
7 7 C 1.32533 * 111.35651 * 0.39398 * 6 5 4
8 8 C 1.39094 * 119.10250 * 359.74849 * 4 3 2
9 9 C 1.41833 * 117.87409 * 0.43875 * 8 4 3
10 10 N 1.38317 * 120.63732 * 179.84591 * 9 8 4
11 11 C 1.47900 * 111.00368 * 216.46249 * 10 9 8
12 12 C 1.53988 * 107.06062 * 214.15304 * 11 10 9
13 13 C 1.54587 * 105.14221 * 1.22778 * 12 11 10
14 14 O 1.42906 * 110.72382 * 263.41873 * 13 12 11
15 15 C 1.50694 * 110.72832 * 140.31445 * 13 12 11
16 16 H 1.08000 * 120.00238 * 241.45457 * 15 13 12
17 17 C 1.37887 * 120.00007 * 61.45217 * 15 13 12
18 18 N 1.31506 * 119.99876 * 0.02562 * 17 15 13
19 19 Si 1.86801 * 119.99972 * 180.02562 * 17 15 13
20 20 H 1.48505 * 109.47023 * 359.97438 * 19 17 15
21 21 H 1.48497 * 109.47208 * 120.00048 * 19 17 15
22 22 H 1.48502 * 109.47042 * 240.00117 * 19 17 15
23 23 C 1.48542 * 111.00249 * 99.06773 * 10 9 8
24 24 N 1.32088 * 118.86048 * 180.02562 * 2 1 3
25 25 C 1.52876 * 110.19243 * 179.51223 * 7 6 5
26 26 C 1.54131 * 104.90539 * 342.43062 * 25 7 6
27 27 C 1.52607 * 138.11807 * 179.69493 * 6 5 4
28 28 H 1.09004 * 109.46824 * 269.97580 * 1 2 3
29 29 H 1.08994 * 109.46935 * 29.97502 * 1 2 3
30 30 H 1.09000 * 109.46838 * 149.97839 * 1 2 3
31 31 H 1.09006 * 109.91507 * 94.80177 * 11 10 9
32 32 H 1.08997 * 109.91814 * 333.51152 * 11 10 9
33 33 H 1.09002 * 110.30586 * 120.14455 * 12 11 10
34 34 H 1.08999 * 110.30851 * 242.20889 * 12 11 10
35 35 H 0.96694 * 114.00225 * 298.54887 * 14 13 12
36 36 H 0.97001 * 120.00180 * 180.02562 * 18 17 15
37 37 H 1.08993 * 110.66614 * 41.28750 * 23 10 9
38 38 H 1.09001 * 110.66327 * 278.15656 * 23 10 9
39 39 H 1.08999 * 110.35318 * 101.28496 * 25 7 6
40 40 H 1.09002 * 110.35821 * 223.56929 * 25 7 6
41 41 H 1.09003 * 111.01119 * 268.51326 * 26 25 7
42 42 H 1.08998 * 111.04529 * 144.65638 * 26 25 7
43 43 H 1.09006 * 110.36428 * 317.08217 * 27 6 5
44 44 H 1.08998 * 110.36325 * 79.28693 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1408 1.1498 0.0000
4 6 3.4808 1.1969 -0.0005
5 16 4.5913 2.5546 -0.0001
6 6 6.0028 1.4977 0.0125
7 6 5.6493 0.2204 0.0075
8 6 4.1997 0.0061 0.0043
9 6 3.4690 -1.2095 -0.0001
10 7 4.1259 -2.4268 0.0011
11 6 3.4037 -3.4197 -0.8235
12 6 3.5964 -4.7914 -0.1508
13 6 4.4397 -4.5065 1.1130
14 8 5.8254 -4.7494 0.8617
15 6 3.9570 -5.3364 2.2746
16 1 3.5786 -4.8531 3.1632
17 6 3.9985 -6.7127 2.2029
18 7 4.4597 -7.3012 1.1210
19 14 3.3995 -7.7415 3.6425
20 1 2.9335 -6.8454 4.7312
21 1 2.2775 -8.6074 3.1992
22 1 4.5118 -8.5893 4.1418
23 6 4.1809 -3.0007 1.3701
24 7 2.1446 -1.1568 -0.0005
25 6 6.8915 -0.6708 0.0064
26 6 8.0421 0.2534 -0.4382
27 6 7.5229 1.6323 0.0151
28 1 -0.3633 -0.0004 1.0277
29 1 -0.3633 0.8902 -0.5134
30 1 -0.3633 -0.8898 -0.5142
31 1 3.8196 -3.4385 -1.8310
32 1 2.3434 -3.1703 -0.8613
33 1 2.6313 -5.2158 0.1261
34 1 4.1292 -5.4686 -0.8183
35 1 6.0270 -5.6639 0.6207
36 1 4.4885 -8.2695 1.0704
37 1 3.2319 -2.8561 1.8862
38 1 5.0003 -2.5611 1.9388
39 1 7.0813 -1.0577 1.0075
40 1 6.7691 -1.4910 -0.7010
41 1 8.1733 0.2215 -1.5198
42 1 8.9698 -0.0025 0.0737
43 1 7.8365 2.4052 -0.6866
44 1 7.8815 1.8635 1.0181
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000591974878.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:48:09
Heat of formation + Delta-G solvation = 19.087365 kcal
Electronic energy + Delta-G solvation = -28554.663076 eV
Core-core repulsion = 24790.875241 eV
Total energy + Delta-G solvation = -3763.787835 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.125 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.50874 -40.16645 -39.62086 -37.00555 -35.15227 -34.19482 -34.04319 -31.53984
-30.81076 -30.01101 -29.19272 -27.73821 -26.87241 -25.51924 -23.64330 -22.37444
-21.86085 -21.52577 -20.41426 -19.33209 -19.00151 -18.52600 -17.37126 -16.98392
-16.86427 -16.58275 -16.40526 -16.22250 -15.68665 -15.06034 -14.96255 -14.48380
-14.06233 -14.04316 -13.95861 -13.82012 -13.65977 -13.52159 -13.33522 -13.28616
-13.04820 -12.97220 -12.61482 -12.58860 -12.41356 -12.26425 -12.21830 -12.08828
-12.01010 -11.95385 -11.77809 -11.34175 -11.14327 -10.64963 -10.55214 -10.18769
-9.95912 -9.70627 -8.97931 -8.24513 -6.40155 -0.72208 -0.38935 -0.09608
0.73107 1.02792 1.38521 1.42405 1.52262 2.29224 2.39589 2.46092
2.87803 3.00663 3.13954 3.27292 3.46556 3.71687 3.77617 3.95147
4.02477 4.11891 4.18097 4.21898 4.35442 4.53641 4.55980 4.61972
4.64039 4.69457 4.74412 4.80510 4.86541 4.90830 4.98652 5.04834
5.09446 5.18093 5.20302 5.31931 5.37193 5.39233 5.46467 5.51494
5.69728 5.75405 5.98760 6.13565 6.63726 6.85614 7.31444 7.44283
8.81400
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.012766 B = 0.003850 C = 0.003202
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2192.724519 B = 7270.634327 C = 8742.353886
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.330 3.670
3 N -0.509 5.509
4 C 0.070 3.930
5 S 0.223 5.777
6 C -0.200 4.200
7 C -0.092 4.092
8 C -0.171 4.171
9 C 0.389 3.611
10 N -0.459 5.459
11 C 0.041 3.959
12 C -0.112 4.112
13 C 0.253 3.747
14 O -0.583 6.583
15 C -0.565 4.565
16 H 0.050 0.950
17 C 0.038 3.962
18 N -0.906 5.906
19 Si 0.957 3.043
20 H -0.275 1.275
21 H -0.277 1.277
22 H -0.276 1.276
23 C 0.083 3.917
24 N -0.569 5.569
25 C -0.056 4.056
26 C -0.109 4.109
27 C -0.035 4.035
28 H 0.099 0.901
29 H 0.104 0.896
30 H 0.093 0.907
31 H 0.077 0.923
32 H 0.066 0.934
33 H 0.048 0.952
34 H 0.058 0.942
35 H 0.376 0.624
36 H 0.271 0.729
37 H 0.045 0.955
38 H 0.072 0.928
39 H 0.071 0.929
40 H 0.065 0.935
41 H 0.083 0.917
42 H 0.105 0.895
43 H 0.103 0.897
44 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.155 17.532 -4.357 18.193
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.058 3.942
3 N -0.228 5.228
4 C -0.181 4.181
5 S 0.484 5.516
6 C -0.316 4.316
7 C -0.103 4.103
8 C -0.186 4.186
9 C 0.143 3.857
10 N -0.181 5.181
11 C -0.085 4.085
12 C -0.151 4.151
13 C 0.213 3.787
14 O -0.391 6.391
15 C -0.603 4.603
16 H 0.068 0.932
17 C -0.164 4.164
18 N -0.545 5.545
19 Si 0.783 3.217
20 H -0.199 1.199
21 H -0.203 1.203
22 H -0.202 1.202
23 C -0.043 4.043
24 N -0.290 5.290
25 C -0.095 4.095
26 C -0.147 4.147
27 C -0.074 4.074
28 H 0.118 0.882
29 H 0.122 0.878
30 H 0.112 0.888
31 H 0.095 0.905
32 H 0.084 0.916
33 H 0.067 0.933
34 H 0.077 0.923
35 H 0.225 0.775
36 H 0.080 0.920
37 H 0.063 0.937
38 H 0.091 0.909
39 H 0.090 0.910
40 H 0.084 0.916
41 H 0.101 0.899
42 H 0.123 0.877
43 H 0.121 0.879
44 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 1.569 19.745 -4.514 20.315
hybrid contribution -0.541 -3.370 0.855 3.519
sum 1.028 16.375 -3.659 16.810
Atomic orbital electron populations
1.20705 0.82398 1.05302 1.05111 1.23834 0.99501 0.81795 0.89075
1.68091 1.06063 1.30148 1.18473 1.24106 0.94945 0.98274 1.00741
1.83573 0.89963 1.00830 1.77244 1.26136 1.02152 0.95808 1.07509
1.21156 0.90979 0.96374 1.01795 1.20192 0.95203 0.93471 1.09753
1.20634 0.86907 0.91901 0.86275 1.62544 1.44498 1.00169 1.10861
1.22959 0.97604 0.91265 0.96712 1.22692 1.00277 0.94001 0.98170
1.19374 0.79540 0.88510 0.91267 1.86105 1.27007 1.33894 1.92097
1.21770 1.43881 0.92307 1.02328 0.93153 1.25587 0.94060 0.98510
0.98199 1.69792 1.45971 1.10725 1.27968 0.85526 0.78164 0.78474
0.79551 1.19929 1.20261 1.20181 1.23017 0.99308 0.95416 0.86529
1.68332 1.09826 1.31665 1.19147 1.21082 0.89240 0.97089 1.02137
1.22353 0.97454 0.92463 1.02446 1.21117 0.82934 0.99273 1.04112
0.88245 0.87765 0.88817 0.90512 0.91580 0.93327 0.92307 0.77539
0.91981 0.93682 0.90946 0.91033 0.91607 0.89852 0.87703 0.87898
0.87970
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.71 10.30 71.24 0.73 -0.98 16
2 C 0.33 10.72 7.64 138.81 1.06 11.78 16
3 N -0.51 -16.78 10.37 -184.54 -1.91 -18.69 16
4 C 0.07 2.29 7.67 84.56 0.65 2.94 16
5 S 0.22 5.37 23.23 -56.49 -1.31 4.05 16
6 C -0.20 -4.81 7.24 25.16 0.18 -4.62 16
7 C -0.09 -2.80 6.60 -18.14 -0.12 -2.92 16
8 C -0.17 -6.11 6.07 -20.02 -0.12 -6.23 16
9 C 0.39 15.25 5.63 133.93 0.75 16.00 16
10 N -0.46 -18.96 5.19 -687.09 -3.56 -22.53 16
11 C 0.04 1.71 6.59 86.44 0.57 2.28 16
12 C -0.11 -5.26 5.26 31.47 0.17 -5.10 16
13 C 0.25 12.59 0.95 -10.34 -0.01 12.58 16
14 O -0.58 -29.84 13.10 -148.98 -1.95 -31.80 16
15 C -0.56 -30.33 8.14 25.60 0.21 -30.12 16
16 H 0.05 2.74 7.78 -2.91 -0.02 2.72 16
17 C 0.04 1.98 5.28 84.66 0.45 2.42 16
18 N -0.91 -47.38 11.00 21.45 0.24 -47.15 16
19 Si 0.96 41.80 29.54 68.60 2.03 43.82 16
20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
21 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16
22 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16
23 C 0.08 3.76 5.63 86.65 0.49 4.25 16
24 N -0.57 -21.42 8.66 -184.23 -1.60 -23.02 16
25 C -0.06 -1.55 6.82 30.94 0.21 -1.34 16
26 C -0.11 -1.90 7.13 31.37 0.22 -1.68 16
27 C -0.03 -0.55 6.82 30.85 0.21 -0.34 16
28 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16
29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16
30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16
31 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16
32 H 0.07 2.69 6.59 -2.39 -0.02 2.67 16
33 H 0.05 2.40 7.84 -2.39 -0.02 2.38 16
34 H 0.06 2.84 7.99 -2.39 -0.02 2.82 16
35 H 0.38 19.49 7.46 -74.06 -0.55 18.93 16
36 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16
37 H 0.04 2.12 7.90 -2.39 -0.02 2.10 16
38 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16
39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
42 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16
43 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16
44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16
Total: -1.00 -62.27 369.63 -1.94 -64.21
By element:
Atomic # 1 Polarization: 31.68 SS G_CDS: 0.49 Total: 32.17 kcal
Atomic # 6 Polarization: -6.73 SS G_CDS: 5.65 Total: -1.08 kcal
Atomic # 7 Polarization: -104.54 SS G_CDS: -6.84 Total: -111.38 kcal
Atomic # 8 Polarization: -29.84 SS G_CDS: -1.95 Total: -31.80 kcal
Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal
Atomic # 16 Polarization: 5.37 SS G_CDS: -1.31 Total: 4.05 kcal
Total: -62.27 -1.94 -64.21 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591974878.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.294 kcal
(2) G-P(sol) polarization free energy of solvation -62.271 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.023 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.936 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.207 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.087 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds