Wall clock time and date at job start Wed Apr 1 2020 03:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.44590 * 123.57594 * 206.38735 * 3 2 1 5 5 C 1.32614 * 113.15011 * 180.02562 * 4 3 2 6 6 S 1.75465 * 110.77825 * 0.02562 * 5 4 3 7 7 C 1.36986 * 123.58266 * 26.43364 * 3 2 1 8 8 N 1.38804 * 124.64414 * 0.22191 * 7 3 2 9 9 C 1.46764 * 124.34855 * 354.14395 * 8 7 3 10 10 C 1.54480 * 105.47060 * 197.01256 * 9 8 7 11 11 C 1.54637 * 101.76579 * 334.58273 * 10 9 8 12 12 H 1.08998 * 110.48173 * 143.60445 * 11 10 9 13 13 N 1.46893 * 110.48455 * 266.12043 * 11 10 9 14 14 C 1.46844 * 111.00392 * 55.78769 * 13 11 10 15 15 C 1.53042 * 109.52620 * 185.83720 * 14 13 11 16 16 C 1.53118 * 109.27638 * 300.82042 * 15 14 13 17 17 C 1.53120 * 109.15863 * 57.65845 * 16 15 14 18 18 H 1.08995 * 109.54147 * 62.30202 * 17 16 15 19 19 C 1.50700 * 109.50245 * 182.40361 * 17 16 15 20 20 H 1.08000 * 120.00443 * 119.80024 * 19 17 16 21 21 C 1.37881 * 119.99841 * 299.79499 * 19 17 16 22 22 N 1.31508 * 119.99893 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 119.99993 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47397 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47155 * 120.00429 * 23 21 19 26 26 H 1.48497 * 109.47438 * 240.00257 * 23 21 19 27 27 C 1.46851 * 110.99851 * 180.02562 * 13 11 10 28 28 C 1.34423 * 124.34925 * 173.83759 * 8 7 3 29 29 O 1.21291 * 124.93807 * 359.57927 * 28 8 7 30 30 H 1.07999 * 123.42350 * 0.04138 * 4 3 2 31 31 H 1.08007 * 124.61178 * 180.02562 * 5 4 3 32 32 H 1.08997 * 110.24775 * 316.00776 * 9 8 7 33 33 H 1.08997 * 110.24680 * 77.92600 * 9 8 7 34 34 H 1.09001 * 110.97195 * 92.69782 * 10 9 8 35 35 H 1.08999 * 110.97476 * 216.46387 * 10 9 8 36 36 H 1.09001 * 109.46151 * 305.85552 * 14 13 11 37 37 H 1.09000 * 109.46064 * 65.82465 * 14 13 11 38 38 H 1.08994 * 109.50065 * 180.88238 * 15 14 13 39 39 H 1.08995 * 109.53287 * 60.78275 * 15 14 13 40 40 H 1.08991 * 109.52645 * 297.75089 * 16 15 14 41 41 H 1.09001 * 109.57127 * 177.58453 * 16 15 14 42 42 H 0.96998 * 120.00020 * 179.97438 * 22 21 19 43 43 H 1.08999 * 109.45850 * 294.17529 * 27 13 11 44 44 H 1.09001 * 109.46211 * 54.14634 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3671 1.0801 0.5354 5 6 4.6715 0.8660 0.4282 6 16 4.9875 -0.6795 -0.3400 7 6 3.3262 -1.0209 -0.5080 8 7 2.8118 -2.1734 -1.0858 9 6 1.3850 -2.5152 -1.1232 10 6 1.3313 -4.0249 -1.4464 11 6 2.6704 -4.2360 -2.1903 12 1 3.0965 -5.2076 -1.9404 13 7 2.4761 -4.1190 -3.6417 14 6 1.8655 -2.8294 -3.9887 15 6 1.5452 -2.8012 -5.4849 16 6 2.8362 -3.0068 -6.2822 17 6 3.4773 -4.3339 -5.8670 18 1 2.8037 -5.1558 -6.1095 19 6 4.7790 -4.5162 -6.6040 20 1 5.7030 -4.6110 -6.0529 21 6 4.7905 -4.5620 -7.9820 22 7 3.6655 -4.4461 -8.6531 23 14 6.4041 -4.7871 -8.8957 24 1 7.5166 -4.8912 -7.9174 25 1 6.3433 -6.0279 -9.7093 26 1 6.6354 -3.6219 -9.7867 27 6 3.7415 -4.3183 -4.3597 28 6 3.5560 -3.1171 -1.6881 29 8 4.7622 -3.0782 -1.8089 30 1 2.9448 1.9702 0.9778 31 1 5.4354 1.5499 0.7677 32 1 0.9249 -2.3203 -0.1546 33 1 0.8805 -1.9433 -1.9019 34 1 1.2949 -4.6183 -0.5328 35 1 0.4850 -4.2555 -2.0934 36 1 0.9463 -2.6975 -3.4179 37 1 2.5595 -2.0232 -3.7506 38 1 1.1064 -1.8380 -5.7450 39 1 0.8404 -3.5981 -5.7218 40 1 3.5261 -2.1887 -6.0756 41 1 2.6076 -3.0304 -7.3477 42 1 3.6736 -4.4779 -9.6226 43 1 4.4270 -3.5054 -4.1199 44 1 4.1844 -5.2676 -4.0585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595621581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:31 Heat of formation + Delta-G solvation = 45.961700 kcal Electronic energy + Delta-G solvation = -28580.089831 eV Core-core repulsion = 24817.467355 eV Total energy + Delta-G solvation = -3762.622476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.66700 -38.65492 -37.80305 -36.57568 -36.08670 -34.14100 -32.44508 -31.00344 -29.81263 -28.96870 -27.19770 -25.36958 -24.99978 -23.05660 -22.26973 -21.68837 -21.01385 -20.37308 -18.79383 -18.40177 -17.61051 -17.06145 -16.24352 -15.91641 -15.72793 -14.87228 -14.76059 -14.67283 -14.39768 -14.22022 -13.95081 -13.84473 -13.62140 -13.39115 -12.98776 -12.79955 -12.75450 -12.63840 -12.48144 -12.39031 -12.09905 -11.92803 -11.56135 -11.28246 -11.21470 -10.98002 -10.75479 -10.67231 -10.62574 -10.33962 -10.14904 -9.89165 -9.53492 -9.14003 -8.76063 -8.72131 -8.34430 -8.29096 -7.96907 -5.99424 -4.05041 0.42126 0.89182 1.62680 1.69487 2.29323 2.40993 2.51623 3.27414 3.30088 3.38298 3.42853 3.84451 3.94794 4.14318 4.25426 4.46675 4.57698 4.60378 4.74434 4.89926 5.06528 5.29663 5.32267 5.39592 5.42614 5.56470 5.64800 5.67515 5.72189 5.80713 5.89511 6.02384 6.13303 6.33923 6.37414 6.42039 6.56372 6.66105 6.86199 7.08239 7.22158 7.33578 7.38111 7.54849 7.64774 7.74846 8.01622 8.12195 8.44487 8.98802 9.59582 11.06827 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.003385 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.808342 B = 8269.445060 C = 9035.168692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.282 3.718 3 C -0.138 4.138 4 C -0.068 4.068 5 C -0.269 4.269 6 S 0.278 5.722 7 C 0.092 3.908 8 N -0.531 5.531 9 C 0.089 3.911 10 C -0.126 4.126 11 C 0.062 3.938 12 H 0.126 0.874 13 N -0.502 5.502 14 C 0.048 3.952 15 C -0.116 4.116 16 C -0.112 4.112 17 C 0.057 3.943 18 H 0.036 0.964 19 C -0.513 4.513 20 H 0.055 0.945 21 C 0.063 3.937 22 N -0.889 5.889 23 Si 0.890 3.110 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.285 1.285 27 C 0.060 3.940 28 C 0.483 3.517 29 O -0.478 6.478 30 H 0.152 0.848 31 H 0.175 0.825 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.023 0.977 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.093 0.907 42 H 0.259 0.741 43 H 0.034 0.966 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.613 7.296 19.433 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.033 4.033 3 C -0.159 4.159 4 C -0.098 4.098 5 C -0.404 4.404 6 S 0.541 5.459 7 C -0.128 4.128 8 N -0.255 5.255 9 C -0.035 4.035 10 C -0.164 4.164 11 C -0.051 4.051 12 H 0.144 0.856 13 N -0.227 5.227 14 C -0.080 4.080 15 C -0.154 4.154 16 C -0.150 4.150 17 C 0.038 3.962 18 H 0.054 0.946 19 C -0.552 4.552 20 H 0.074 0.926 21 C -0.138 4.138 22 N -0.528 5.528 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.066 4.066 28 C 0.269 3.731 29 O -0.348 6.348 30 H 0.170 0.830 31 H 0.192 0.808 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.112 0.888 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.729 6.152 18.625 19.803 hybrid contribution 0.435 1.571 0.114 1.634 sum -2.293 7.723 18.738 20.396 Atomic orbital electron populations 1.81291 1.11392 1.07912 1.10148 1.24812 0.91659 0.93567 0.93285 1.16018 0.85816 0.97492 1.16561 1.20640 0.91717 0.97670 0.99749 1.25591 1.00164 1.03690 1.11001 1.84247 0.95378 1.11853 1.54398 1.22085 1.00999 0.90344 0.99415 1.45539 1.10092 1.17295 1.52615 1.22757 0.79191 0.97920 1.03596 1.22782 0.98878 0.93122 1.01579 1.22725 0.93995 0.97221 0.91145 0.85596 1.62529 1.27741 1.32043 1.00379 1.22398 0.97776 0.88997 0.98816 1.21673 1.00684 1.00287 0.92732 1.21682 0.92848 0.98441 1.02068 1.18672 0.96341 0.94269 0.86912 0.94596 1.21163 0.93152 1.49577 0.91293 0.92643 1.24919 0.96150 0.95092 0.97620 1.69889 1.25410 1.50457 1.07016 0.86566 0.84137 0.77661 0.79834 1.19762 1.21025 1.21098 1.22512 0.86684 1.00060 0.97369 1.22965 0.88755 0.84943 0.76395 1.90757 1.13049 1.77362 1.53667 0.83019 0.80806 0.89516 0.89261 0.88835 0.86960 0.91516 0.95844 0.93279 0.91672 0.95164 0.88835 0.93101 0.94787 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.68 18.22 41.84 0.76 -4.91 16 2 C 0.28 3.35 12.36 -22.47 -0.28 3.07 16 3 C -0.14 -1.50 5.88 -105.92 -0.62 -2.12 16 4 C -0.07 -0.57 10.35 -38.98 -0.40 -0.97 16 5 C -0.27 -2.10 11.10 28.83 0.32 -1.78 16 6 S 0.28 3.02 20.92 -107.50 -2.25 0.77 16 7 C 0.09 1.12 6.96 -14.84 -0.10 1.01 16 8 N -0.53 -6.77 2.96 -114.42 -0.34 -7.11 16 9 C 0.09 0.96 4.62 -3.12 -0.01 0.94 16 10 C -0.13 -1.22 6.22 -25.09 -0.16 -1.38 16 11 C 0.06 0.83 3.24 -67.72 -0.22 0.61 16 12 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 13 N -0.50 -8.46 4.67 -226.70 -1.06 -9.52 16 14 C 0.05 0.78 4.02 -3.83 -0.02 0.77 16 15 C -0.12 -2.17 6.09 -26.65 -0.16 -2.34 16 16 C -0.11 -2.61 5.03 -26.61 -0.13 -2.75 16 17 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 18 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.51 -13.98 8.56 -34.44 -0.29 -14.28 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.89 -25.04 11.36 55.43 0.63 -24.41 16 23 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.06 1.25 4.27 -3.83 -0.02 1.23 16 28 C 0.48 7.15 5.68 -10.86 -0.06 7.09 16 29 O -0.48 -8.38 14.72 5.55 0.08 -8.30 16 30 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.17 0.87 8.06 -52.48 -0.42 0.44 16 32 H 0.09 0.87 6.50 -51.93 -0.34 0.53 16 33 H 0.09 1.03 6.01 -51.93 -0.31 0.72 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.11 1.05 7.56 -51.93 -0.39 0.66 16 36 H 0.07 0.92 4.68 -51.93 -0.24 0.68 16 37 H 0.02 0.42 7.24 -51.93 -0.38 0.04 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.03 0.76 6.73 -51.93 -0.35 0.42 16 44 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -30.51 359.68 -9.91 -40.42 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.68 Total: -0.51 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.46 Total: -8.06 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.01 Total: -45.96 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.25 Total: 0.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.51 -9.91 -40.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.381 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds