Wall clock time and date at job start Wed Apr 1 2020 03:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.44590 * 123.57594 * 206.38735 * 3 2 1 5 5 C 1.32614 * 113.15011 * 180.02562 * 4 3 2 6 6 S 1.75465 * 110.77825 * 0.02562 * 5 4 3 7 7 C 1.36986 * 123.58266 * 26.43364 * 3 2 1 8 8 N 1.38804 * 124.64414 * 0.22191 * 7 3 2 9 9 C 1.46764 * 124.34855 * 354.14395 * 8 7 3 10 10 C 1.54480 * 105.47060 * 197.01256 * 9 8 7 11 11 C 1.54637 * 101.76579 * 334.58273 * 10 9 8 12 12 H 1.08998 * 110.48173 * 143.60445 * 11 10 9 13 13 N 1.46893 * 110.48455 * 266.12043 * 11 10 9 14 14 C 1.46844 * 111.00392 * 55.78769 * 13 11 10 15 15 C 1.53042 * 109.52620 * 185.83720 * 14 13 11 16 16 C 1.53118 * 109.27638 * 300.82042 * 15 14 13 17 17 C 1.53120 * 109.15863 * 57.65845 * 16 15 14 18 18 H 1.08995 * 109.54147 * 62.30202 * 17 16 15 19 19 C 1.50700 * 109.50245 * 182.40361 * 17 16 15 20 20 H 1.08000 * 120.00443 * 119.80024 * 19 17 16 21 21 C 1.37881 * 119.99841 * 299.79499 * 19 17 16 22 22 N 1.31508 * 119.99893 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 119.99993 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47397 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47155 * 120.00429 * 23 21 19 26 26 H 1.48497 * 109.47438 * 240.00257 * 23 21 19 27 27 C 1.46851 * 110.99851 * 180.02562 * 13 11 10 28 28 C 1.34423 * 124.34925 * 173.83759 * 8 7 3 29 29 O 1.21291 * 124.93807 * 359.57927 * 28 8 7 30 30 H 1.07999 * 123.42350 * 0.04138 * 4 3 2 31 31 H 1.08007 * 124.61178 * 180.02562 * 5 4 3 32 32 H 1.08997 * 110.24775 * 316.00776 * 9 8 7 33 33 H 1.08997 * 110.24680 * 77.92600 * 9 8 7 34 34 H 1.09001 * 110.97195 * 92.69782 * 10 9 8 35 35 H 1.08999 * 110.97476 * 216.46387 * 10 9 8 36 36 H 1.09001 * 109.46151 * 305.85552 * 14 13 11 37 37 H 1.09000 * 109.46064 * 65.82465 * 14 13 11 38 38 H 1.08994 * 109.50065 * 180.88238 * 15 14 13 39 39 H 1.08995 * 109.53287 * 60.78275 * 15 14 13 40 40 H 1.08991 * 109.52645 * 297.75089 * 16 15 14 41 41 H 1.09001 * 109.57127 * 177.58453 * 16 15 14 42 42 H 0.96998 * 120.00020 * 179.97438 * 22 21 19 43 43 H 1.08999 * 109.45850 * 294.17529 * 27 13 11 44 44 H 1.09001 * 109.46211 * 54.14634 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3671 1.0801 0.5354 5 6 4.6715 0.8660 0.4282 6 16 4.9875 -0.6795 -0.3400 7 6 3.3262 -1.0209 -0.5080 8 7 2.8118 -2.1734 -1.0858 9 6 1.3850 -2.5152 -1.1232 10 6 1.3313 -4.0249 -1.4464 11 6 2.6704 -4.2360 -2.1903 12 1 3.0965 -5.2076 -1.9404 13 7 2.4761 -4.1190 -3.6417 14 6 1.8655 -2.8294 -3.9887 15 6 1.5452 -2.8012 -5.4849 16 6 2.8362 -3.0068 -6.2822 17 6 3.4773 -4.3339 -5.8670 18 1 2.8037 -5.1558 -6.1095 19 6 4.7790 -4.5162 -6.6040 20 1 5.7030 -4.6110 -6.0529 21 6 4.7905 -4.5620 -7.9820 22 7 3.6655 -4.4461 -8.6531 23 14 6.4041 -4.7871 -8.8957 24 1 7.5166 -4.8912 -7.9174 25 1 6.3433 -6.0279 -9.7093 26 1 6.6354 -3.6219 -9.7867 27 6 3.7415 -4.3183 -4.3597 28 6 3.5560 -3.1171 -1.6881 29 8 4.7622 -3.0782 -1.8089 30 1 2.9448 1.9702 0.9778 31 1 5.4354 1.5499 0.7677 32 1 0.9249 -2.3203 -0.1546 33 1 0.8805 -1.9433 -1.9019 34 1 1.2949 -4.6183 -0.5328 35 1 0.4850 -4.2555 -2.0934 36 1 0.9463 -2.6975 -3.4179 37 1 2.5595 -2.0232 -3.7506 38 1 1.1064 -1.8380 -5.7450 39 1 0.8404 -3.5981 -5.7218 40 1 3.5261 -2.1887 -6.0756 41 1 2.6076 -3.0304 -7.3477 42 1 3.6736 -4.4779 -9.6226 43 1 4.4270 -3.5054 -4.1199 44 1 4.1844 -5.2676 -4.0585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:30 Heat of formation + Delta-G solvation = 27.423047 kcal Electronic energy + Delta-G solvation = -28580.893728 eV Core-core repulsion = 24817.467355 eV Total energy + Delta-G solvation = -3763.426372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.72989 -39.73773 -39.08464 -37.69422 -37.00373 -35.65956 -34.06996 -32.31393 -31.53070 -29.83357 -28.34798 -26.96146 -26.22799 -24.47211 -23.54193 -22.96223 -21.91500 -21.49692 -20.38239 -19.45757 -18.82996 -18.21807 -17.92046 -16.92863 -16.75707 -16.60888 -16.04544 -15.67007 -15.44230 -15.42387 -15.14668 -14.95557 -14.86512 -14.46873 -14.44278 -14.17417 -14.14985 -13.81650 -13.61232 -13.48895 -13.42960 -12.99949 -12.88918 -12.75056 -12.57603 -12.47151 -12.28344 -12.07199 -11.90217 -11.77915 -11.56444 -11.42881 -11.29744 -10.89847 -10.72319 -10.40284 -9.55199 -9.40987 -9.14934 -8.10329 -6.23461 -0.46344 0.08587 0.87495 0.98683 1.21614 1.38508 1.40696 1.50603 1.52093 1.59700 2.38594 2.41123 2.74407 2.98088 3.13892 3.17117 3.28527 3.68875 3.78738 3.86531 4.00039 4.08482 4.21412 4.24328 4.33612 4.42988 4.51550 4.63774 4.76046 4.77928 4.82399 4.87637 4.94169 4.96084 5.02568 5.08675 5.09963 5.24717 5.31222 5.42505 5.46566 5.61293 5.79423 6.01610 6.04352 6.12482 6.39590 6.41521 6.58246 6.87274 7.44200 8.94519 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.003385 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.808342 B = 8269.445060 C = 9035.168692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.294 3.706 3 C -0.131 4.131 4 C -0.072 4.072 5 C -0.240 4.240 6 S 0.239 5.761 7 C 0.065 3.935 8 N -0.530 5.530 9 C 0.087 3.913 10 C -0.110 4.110 11 C 0.056 3.944 12 H 0.135 0.865 13 N -0.502 5.502 14 C 0.056 3.944 15 C -0.110 4.110 16 C -0.105 4.105 17 C 0.056 3.944 18 H 0.008 0.992 19 C -0.537 4.537 20 H 0.045 0.955 21 C 0.018 3.982 22 N -0.912 5.912 23 Si 0.951 3.049 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.280 1.280 27 C 0.080 3.920 28 C 0.478 3.522 29 O -0.516 6.516 30 H 0.182 0.818 31 H 0.209 0.791 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.009 0.991 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.012 0.988 41 H 0.062 0.938 42 H 0.261 0.739 43 H 0.012 0.988 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 8.415 21.504 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.021 4.021 3 C -0.152 4.152 4 C -0.101 4.101 5 C -0.376 4.376 6 S 0.502 5.498 7 C -0.155 4.155 8 N -0.254 5.254 9 C -0.036 4.036 10 C -0.148 4.148 11 C -0.056 4.056 12 H 0.153 0.847 13 N -0.226 5.226 14 C -0.071 4.071 15 C -0.148 4.148 16 C -0.143 4.143 17 C 0.037 3.963 18 H 0.026 0.974 19 C -0.575 4.575 20 H 0.064 0.936 21 C -0.181 4.181 22 N -0.551 5.551 23 Si 0.776 3.224 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.206 1.206 27 C -0.048 4.048 28 C 0.265 3.735 29 O -0.389 6.389 30 H 0.199 0.801 31 H 0.225 0.775 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.122 0.878 37 H 0.027 0.973 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.030 0.970 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.030 0.970 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.501 7.290 20.724 22.246 hybrid contribution 0.677 1.313 -0.461 1.548 sum -2.824 8.603 20.263 22.194 Atomic orbital electron populations 1.81308 1.12037 1.08721 1.10905 1.24905 0.91714 0.92855 0.92632 1.16304 0.85426 0.97763 1.15716 1.20958 0.91533 0.97896 0.99689 1.25912 1.00825 1.01936 1.08888 1.84444 0.95726 1.14382 1.55203 1.22242 1.01430 0.90760 1.01034 1.45470 1.10484 1.17212 1.52192 1.22869 0.78152 0.98528 1.04013 1.22856 0.96646 0.92729 1.02563 1.22891 0.96378 0.97439 0.88912 0.84700 1.62418 1.25346 1.32274 1.02600 1.22357 0.98897 0.88328 0.97521 1.21585 0.98082 1.01347 0.93745 1.21472 0.94770 0.97109 1.00933 1.18572 0.94656 0.93726 0.89344 0.97386 1.21498 0.94004 1.49952 0.92074 0.93647 1.25645 0.99273 0.94802 0.98375 1.70011 1.27086 1.50824 1.07226 0.85619 0.80375 0.77814 0.78546 1.19553 1.20237 1.20599 1.22051 0.88204 0.99016 0.95489 1.23063 0.88421 0.85598 0.76373 1.90734 1.14611 1.78298 1.55303 0.80053 0.77457 0.88375 0.89882 0.85569 0.85794 0.87809 0.97311 0.91359 0.91583 0.96953 0.91952 0.92978 0.96953 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.97 18.22 19.00 0.35 -10.62 16 2 C 0.29 6.32 12.36 88.33 1.09 7.41 16 3 C -0.13 -2.55 5.88 -20.71 -0.12 -2.68 16 4 C -0.07 -0.97 10.35 22.73 0.24 -0.73 16 5 C -0.24 -3.05 11.10 66.66 0.74 -2.31 16 6 S 0.24 5.02 20.92 -56.49 -1.18 3.84 16 7 C 0.07 1.50 6.96 83.29 0.58 2.08 16 8 N -0.53 -12.92 2.96 -634.49 -1.88 -14.80 16 9 C 0.09 1.68 4.62 86.83 0.40 2.08 16 10 C -0.11 -1.82 6.22 31.65 0.20 -1.62 16 11 C 0.06 1.43 3.24 44.91 0.15 1.58 16 12 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 13 N -0.50 -16.74 4.67 -871.15 -4.07 -20.81 16 14 C 0.06 1.80 4.02 86.33 0.35 2.15 16 15 C -0.11 -4.10 6.09 30.65 0.19 -3.91 16 16 C -0.10 -5.06 5.03 30.67 0.15 -4.90 16 17 C 0.06 2.85 2.26 -11.49 -0.03 2.82 16 18 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 19 C -0.54 -30.45 8.56 25.60 0.22 -30.23 16 20 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 21 C 0.02 1.02 5.30 84.66 0.45 1.47 16 22 N -0.91 -52.88 11.36 21.45 0.24 -52.64 16 23 Si 0.95 44.46 29.54 68.60 2.03 46.48 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 C 0.08 3.43 4.27 86.32 0.37 3.80 16 28 C 0.48 14.06 5.68 87.90 0.50 14.56 16 29 O -0.52 -18.65 14.72 -3.06 -0.05 -18.69 16 30 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 31 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.10 1.70 6.50 -2.39 -0.02 1.68 16 33 H 0.08 1.71 6.01 -2.39 -0.01 1.69 16 34 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.12 1.84 7.56 -2.39 -0.02 1.83 16 36 H 0.10 2.60 4.68 -2.39 -0.01 2.59 16 37 H 0.01 0.31 7.24 -2.39 -0.02 0.29 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 41 H 0.06 3.39 6.16 -2.39 -0.01 3.37 16 42 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.01 0.58 6.73 -2.39 -0.02 0.56 16 44 H 0.06 2.66 8.12 -2.39 -0.02 2.64 16 Total: -1.00 -69.82 359.68 1.94 -67.87 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.04 Total: 7.82 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 5.47 Total: -8.45 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -5.36 Total: -98.87 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.05 Total: -18.69 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.18 Total: 3.84 kcal Total: -69.82 1.94 -67.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.293 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds