Wall clock time and date at job start Wed Apr 1 2020 03:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.44584 * 123.58169 * 68.81960 * 3 2 1 5 5 C 1.32617 * 113.15270 * 180.25480 * 4 3 2 6 6 S 1.75471 * 110.77588 * 359.76205 * 5 4 3 7 7 C 1.36985 * 123.57400 * 248.61972 * 3 2 1 8 8 N 1.38798 * 124.65157 * 0.03234 * 7 3 2 9 9 C 1.46766 * 124.34726 * 353.96948 * 8 7 3 10 10 C 1.54692 * 105.53461 * 196.94541 * 9 8 7 11 11 C 1.54630 * 101.66935 * 334.74571 * 10 9 8 12 12 H 1.09001 * 110.48093 * 265.90076 * 11 10 9 13 13 N 1.46899 * 110.48873 * 143.39301 * 11 10 9 14 14 C 1.46852 * 111.00007 * 52.62830 * 13 11 10 15 15 C 1.53039 * 109.52115 * 185.83993 * 14 13 11 16 16 C 1.53118 * 109.27785 * 300.81685 * 15 14 13 17 17 C 1.53127 * 109.15865 * 57.65824 * 16 15 14 18 18 H 1.09003 * 109.53171 * 62.30573 * 17 16 15 19 19 C 1.50696 * 109.50137 * 182.40283 * 17 16 15 20 20 H 1.07998 * 119.99899 * 114.15006 * 19 17 16 21 21 C 1.37880 * 119.99840 * 294.14857 * 19 17 16 22 22 N 1.31517 * 119.99806 * 156.30592 * 21 19 17 23 23 Si 1.86798 * 120.00198 * 336.30745 * 21 19 17 24 24 H 1.48500 * 109.47233 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47203 * 299.99777 * 23 21 19 26 26 H 1.48499 * 109.47151 * 59.99766 * 23 21 19 27 27 C 1.46843 * 110.99928 * 176.83672 * 13 11 10 28 28 C 1.34420 * 124.35031 * 173.99832 * 8 7 3 29 29 O 1.21282 * 124.94396 * 359.60156 * 28 8 7 30 30 H 1.08006 * 123.42498 * 0.02562 * 4 3 2 31 31 H 1.08004 * 124.61254 * 179.74394 * 5 4 3 32 32 H 1.09004 * 110.24590 * 316.04028 * 9 8 7 33 33 H 1.09001 * 110.24435 * 77.95273 * 9 8 7 34 34 H 1.08998 * 111.08895 * 216.62241 * 10 9 8 35 35 H 1.09008 * 110.94186 * 92.79245 * 10 9 8 36 36 H 1.08997 * 109.45971 * 305.85847 * 14 13 11 37 37 H 1.09003 * 109.46244 * 65.81873 * 14 13 11 38 38 H 1.08997 * 109.50541 * 60.76280 * 15 14 13 39 39 H 1.09001 * 109.49676 * 180.84179 * 15 14 13 40 40 H 1.08995 * 109.52469 * 297.75447 * 16 15 14 41 41 H 1.08994 * 109.51933 * 177.55851 * 16 15 14 42 42 H 0.96996 * 119.99912 * 354.95098 * 22 21 19 43 43 H 1.09004 * 109.46310 * 54.14547 * 27 13 11 44 44 H 1.08997 * 109.46324 * 294.17836 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3680 -0.4342 -1.1232 5 6 4.6722 -0.3519 -0.8974 6 16 4.9871 0.2732 0.7117 7 6 3.3254 0.4171 1.0628 8 7 2.8103 0.8861 2.2633 9 6 1.3839 1.1207 2.5170 10 6 1.3294 2.0233 3.7721 11 6 2.6671 1.6760 4.4655 12 1 2.5198 0.8907 5.2070 13 7 3.2467 2.8713 5.0926 14 6 2.2725 3.5282 5.9735 15 6 2.8584 4.8430 6.4934 16 6 4.1521 4.5522 7.2591 17 6 5.1313 3.8248 6.3335 18 1 5.3827 4.4687 5.4906 19 6 6.3849 3.4823 7.0964 20 1 6.6388 2.4491 7.2820 21 6 7.2076 4.4880 7.5576 22 7 8.0072 4.2673 8.5782 23 14 7.1867 6.1639 6.7328 24 1 8.1545 7.0621 7.4122 25 1 7.5654 6.0173 5.3043 26 1 5.8232 6.7446 6.8263 27 6 4.4795 2.5396 5.8182 28 6 3.5539 1.1844 3.3426 29 8 4.7601 1.0759 3.4068 30 1 2.9463 -0.7932 -2.0504 31 1 5.4366 -0.6319 -1.6072 32 1 0.9279 1.6277 1.6666 33 1 0.8749 0.1764 2.7098 34 1 0.4820 1.7624 4.4062 35 1 1.2965 3.0766 3.4934 36 1 1.3589 3.7332 5.4156 37 1 2.0449 2.8740 6.8151 38 1 3.0734 5.5031 5.6531 39 1 2.1409 5.3229 7.1590 40 1 3.9313 3.9237 8.1219 41 1 4.5956 5.4897 7.5941 42 1 7.9660 3.4224 9.0527 43 1 5.1688 2.0265 5.1475 44 1 4.2416 1.8900 6.6605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595621582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:35 Heat of formation + Delta-G solvation = 43.823164 kcal Electronic energy + Delta-G solvation = -28044.133239 eV Core-core repulsion = 24281.418029 eV Total energy + Delta-G solvation = -3762.715210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.42456 -38.76778 -37.97198 -36.68630 -36.14344 -34.26727 -32.56058 -31.13504 -30.22879 -28.98816 -27.17097 -25.49032 -24.64957 -23.23053 -22.45170 -21.14213 -20.93161 -20.36231 -18.85721 -18.50638 -17.60271 -17.50583 -16.99810 -15.95403 -15.61007 -15.32642 -14.73032 -14.58009 -14.31155 -14.20930 -14.11200 -13.86743 -13.68986 -13.44740 -13.03016 -12.90168 -12.79512 -12.73513 -12.61764 -12.56137 -12.16998 -11.98739 -11.86168 -11.54540 -11.23605 -11.14659 -10.70322 -10.60006 -10.52263 -10.30184 -10.09605 -9.68831 -9.55847 -9.33047 -8.75052 -8.73717 -8.33775 -8.11516 -8.06421 -6.41383 -3.98949 0.39968 0.87487 1.61163 1.66764 2.23472 2.37730 2.45256 3.22082 3.44677 3.50985 3.68099 3.75935 3.96071 3.98856 4.17098 4.56880 4.57256 4.62091 4.66786 4.87928 4.99885 5.07785 5.24319 5.36446 5.37128 5.39179 5.49338 5.60987 5.65267 5.74083 5.78629 5.91390 6.02346 6.13339 6.30970 6.32842 6.34889 6.43267 6.74635 6.82285 6.89461 7.25866 7.27493 7.38287 7.43327 7.63270 7.70753 8.25980 8.43953 8.96308 9.65789 10.96025 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.003268 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.778682 B = 8566.130660 C = 9794.632777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.284 3.716 3 C -0.140 4.140 4 C -0.069 4.069 5 C -0.269 4.269 6 S 0.288 5.712 7 C 0.093 3.907 8 N -0.533 5.533 9 C 0.099 3.901 10 C -0.124 4.124 11 C 0.058 3.942 12 H 0.085 0.915 13 N -0.523 5.523 14 C 0.061 3.939 15 C -0.119 4.119 16 C -0.121 4.121 17 C 0.033 3.967 18 H 0.027 0.973 19 C -0.603 4.603 20 H 0.055 0.945 21 C 0.038 3.962 22 N -0.902 5.902 23 Si 1.038 2.962 24 H -0.288 1.288 25 H -0.283 1.283 26 H -0.277 1.277 27 C 0.061 3.939 28 C 0.524 3.476 29 O -0.464 6.464 30 H 0.152 0.848 31 H 0.175 0.825 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.268 0.732 43 H 0.092 0.908 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.293 -7.934 -16.606 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.031 4.031 3 C -0.160 4.160 4 C -0.099 4.099 5 C -0.405 4.405 6 S 0.551 5.449 7 C -0.128 4.128 8 N -0.257 5.257 9 C -0.025 4.025 10 C -0.163 4.163 11 C -0.055 4.055 12 H 0.103 0.897 13 N -0.249 5.249 14 C -0.067 4.067 15 C -0.157 4.157 16 C -0.159 4.159 17 C 0.014 3.986 18 H 0.045 0.955 19 C -0.641 4.641 20 H 0.073 0.927 21 C -0.167 4.167 22 N -0.535 5.535 23 Si 0.866 3.134 24 H -0.214 1.214 25 H -0.209 1.209 26 H -0.203 1.203 27 C -0.065 4.065 28 C 0.312 3.688 29 O -0.333 6.333 30 H 0.170 0.830 31 H 0.192 0.808 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -12.159 -5.876 -16.079 20.998 hybrid contribution -1.983 -2.512 -0.226 3.208 sum -14.142 -8.388 -16.305 23.156 Atomic orbital electron populations 1.81290 1.11433 1.10640 1.07750 1.24832 0.91666 0.93031 0.93587 1.16007 0.85744 1.18160 0.96128 1.20627 0.91700 1.00067 0.97500 1.25634 1.00176 1.11963 1.02708 1.84450 0.94923 1.59239 1.06247 1.22058 1.01160 1.00494 0.89042 1.45251 1.09912 1.61269 1.09293 1.22540 0.79206 1.00909 0.99883 1.22863 0.96965 1.01548 0.94877 1.22155 0.93078 0.95506 0.94713 0.89746 1.62132 1.06270 1.21515 1.34987 1.22102 0.94198 0.96244 0.94118 1.21671 0.98463 0.95677 0.99870 1.22063 0.94276 1.00848 0.98727 1.18933 0.93786 0.91825 0.94102 0.95453 1.21866 1.08194 0.94916 1.39091 0.92722 1.25685 0.93192 1.03394 0.94459 1.70852 1.40228 1.26273 1.16155 0.84125 0.76449 0.76307 0.76504 1.21411 1.20937 1.20322 1.22511 0.88770 0.99727 0.95496 1.21245 0.87999 0.76096 0.83488 1.90757 1.12639 1.49338 1.80606 0.83050 0.80770 0.89269 0.89847 0.88321 0.87961 0.91433 0.95096 0.91820 0.92620 0.93308 0.92383 0.92236 0.88962 0.95944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.27 18.22 41.84 0.76 -4.51 16 2 C 0.28 3.08 12.36 -22.47 -0.28 2.81 16 3 C -0.14 -1.40 5.88 -105.92 -0.62 -2.02 16 4 C -0.07 -0.53 10.35 -38.98 -0.40 -0.93 16 5 C -0.27 -1.98 11.10 28.83 0.32 -1.66 16 6 S 0.29 3.05 20.92 -107.50 -2.25 0.80 16 7 C 0.09 1.06 6.96 -14.85 -0.10 0.96 16 8 N -0.53 -6.42 3.10 -114.29 -0.35 -6.77 16 9 C 0.10 0.94 5.51 -3.01 -0.02 0.93 16 10 C -0.12 -1.15 5.39 -24.98 -0.13 -1.28 16 11 C 0.06 0.76 2.66 -67.72 -0.18 0.58 16 12 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 13 N -0.52 -8.58 4.50 -226.70 -1.02 -9.60 16 14 C 0.06 0.88 5.18 -3.83 -0.02 0.86 16 15 C -0.12 -1.97 6.09 -26.65 -0.16 -2.13 16 16 C -0.12 -2.57 5.00 -26.60 -0.13 -2.71 16 17 C 0.03 0.78 1.86 -91.69 -0.17 0.61 16 18 H 0.03 0.68 6.71 -51.93 -0.35 0.33 16 19 C -0.60 -16.98 8.76 -34.44 -0.30 -17.28 16 20 H 0.05 1.67 7.99 -52.49 -0.42 1.25 16 21 C 0.04 1.11 5.27 -17.82 -0.09 1.01 16 22 N -0.90 -27.68 13.70 55.43 0.76 -26.92 16 23 Si 1.04 25.43 26.56 -169.99 -4.51 20.91 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.26 5.96 56.52 0.34 -5.92 16 27 C 0.06 1.26 4.55 -3.84 -0.02 1.25 16 28 C 0.52 7.66 7.55 -10.86 -0.08 7.58 16 29 O -0.46 -8.25 13.36 5.56 0.07 -8.18 16 30 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 31 H 0.17 0.81 8.06 -52.48 -0.42 0.38 16 32 H 0.09 0.85 6.52 -51.93 -0.34 0.51 16 33 H 0.08 0.72 8.05 -51.93 -0.42 0.31 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.96 7.43 -51.92 -0.39 0.58 16 36 H 0.07 0.77 6.34 -51.93 -0.33 0.44 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.31 5.48 -51.93 -0.28 1.02 16 42 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 43 H 0.09 2.07 5.47 -51.93 -0.28 1.79 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -32.47 360.85 -9.33 -41.80 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.83 Total: -1.53 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -2.40 Total: -11.44 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.15 Total: -47.81 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.07 Total: -8.18 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -4.51 Total: 20.91 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.25 Total: 0.80 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.47 -9.33 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.628 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds