Wall clock time and date at job start Wed Apr 1 2020 03:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.44584 * 123.58169 * 68.81960 * 3 2 1 5 5 C 1.32617 * 113.15270 * 180.25480 * 4 3 2 6 6 S 1.75471 * 110.77588 * 359.76205 * 5 4 3 7 7 C 1.36985 * 123.57400 * 248.61972 * 3 2 1 8 8 N 1.38798 * 124.65157 * 0.03234 * 7 3 2 9 9 C 1.46766 * 124.34726 * 353.96948 * 8 7 3 10 10 C 1.54692 * 105.53461 * 196.94541 * 9 8 7 11 11 C 1.54630 * 101.66935 * 334.74571 * 10 9 8 12 12 H 1.09001 * 110.48093 * 265.90076 * 11 10 9 13 13 N 1.46899 * 110.48873 * 143.39301 * 11 10 9 14 14 C 1.46852 * 111.00007 * 52.62830 * 13 11 10 15 15 C 1.53039 * 109.52115 * 185.83993 * 14 13 11 16 16 C 1.53118 * 109.27785 * 300.81685 * 15 14 13 17 17 C 1.53127 * 109.15865 * 57.65824 * 16 15 14 18 18 H 1.09003 * 109.53171 * 62.30573 * 17 16 15 19 19 C 1.50696 * 109.50137 * 182.40283 * 17 16 15 20 20 H 1.07998 * 119.99899 * 114.15006 * 19 17 16 21 21 C 1.37880 * 119.99840 * 294.14857 * 19 17 16 22 22 N 1.31517 * 119.99806 * 156.30592 * 21 19 17 23 23 Si 1.86798 * 120.00198 * 336.30745 * 21 19 17 24 24 H 1.48500 * 109.47233 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47203 * 299.99777 * 23 21 19 26 26 H 1.48499 * 109.47151 * 59.99766 * 23 21 19 27 27 C 1.46843 * 110.99928 * 176.83672 * 13 11 10 28 28 C 1.34420 * 124.35031 * 173.99832 * 8 7 3 29 29 O 1.21282 * 124.94396 * 359.60156 * 28 8 7 30 30 H 1.08006 * 123.42498 * 0.02562 * 4 3 2 31 31 H 1.08004 * 124.61254 * 179.74394 * 5 4 3 32 32 H 1.09004 * 110.24590 * 316.04028 * 9 8 7 33 33 H 1.09001 * 110.24435 * 77.95273 * 9 8 7 34 34 H 1.08998 * 111.08895 * 216.62241 * 10 9 8 35 35 H 1.09008 * 110.94186 * 92.79245 * 10 9 8 36 36 H 1.08997 * 109.45971 * 305.85847 * 14 13 11 37 37 H 1.09003 * 109.46244 * 65.81873 * 14 13 11 38 38 H 1.08997 * 109.50541 * 60.76280 * 15 14 13 39 39 H 1.09001 * 109.49676 * 180.84179 * 15 14 13 40 40 H 1.08995 * 109.52469 * 297.75447 * 16 15 14 41 41 H 1.08994 * 109.51933 * 177.55851 * 16 15 14 42 42 H 0.96996 * 119.99912 * 354.95098 * 22 21 19 43 43 H 1.09004 * 109.46310 * 54.14547 * 27 13 11 44 44 H 1.08997 * 109.46324 * 294.17836 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3680 -0.4342 -1.1232 5 6 4.6722 -0.3519 -0.8974 6 16 4.9871 0.2732 0.7117 7 6 3.3254 0.4171 1.0628 8 7 2.8103 0.8861 2.2633 9 6 1.3839 1.1207 2.5170 10 6 1.3294 2.0233 3.7721 11 6 2.6671 1.6760 4.4655 12 1 2.5198 0.8907 5.2070 13 7 3.2467 2.8713 5.0926 14 6 2.2725 3.5282 5.9735 15 6 2.8584 4.8430 6.4934 16 6 4.1521 4.5522 7.2591 17 6 5.1313 3.8248 6.3335 18 1 5.3827 4.4687 5.4906 19 6 6.3849 3.4823 7.0964 20 1 6.6388 2.4491 7.2820 21 6 7.2076 4.4880 7.5576 22 7 8.0072 4.2673 8.5782 23 14 7.1867 6.1639 6.7328 24 1 8.1545 7.0621 7.4122 25 1 7.5654 6.0173 5.3043 26 1 5.8232 6.7446 6.8263 27 6 4.4795 2.5396 5.8182 28 6 3.5539 1.1844 3.3426 29 8 4.7601 1.0759 3.4068 30 1 2.9463 -0.7932 -2.0504 31 1 5.4366 -0.6319 -1.6072 32 1 0.9279 1.6277 1.6666 33 1 0.8749 0.1764 2.7098 34 1 0.4820 1.7624 4.4062 35 1 1.2965 3.0766 3.4934 36 1 1.3589 3.7332 5.4156 37 1 2.0449 2.8740 6.8151 38 1 3.0734 5.5031 5.6531 39 1 2.1409 5.3229 7.1590 40 1 3.9313 3.9237 8.1219 41 1 4.5956 5.4897 7.5941 42 1 7.9660 3.4224 9.0527 43 1 5.1688 2.0265 5.1475 44 1 4.2416 1.8900 6.6605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:34 Heat of formation + Delta-G solvation = 22.283369 kcal Electronic energy + Delta-G solvation = -28045.067275 eV Core-core repulsion = 24281.418029 eV Total energy + Delta-G solvation = -3763.649246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.40689 -39.88896 -39.11498 -37.69935 -36.98978 -35.78327 -34.27513 -32.27245 -31.90935 -29.80270 -28.22802 -26.75879 -26.03943 -24.59204 -23.61829 -22.26381 -21.85274 -21.44055 -20.48688 -19.64288 -19.43089 -18.51505 -17.97142 -16.88569 -16.69745 -16.40031 -16.11611 -15.64683 -15.40560 -15.25402 -15.15414 -15.09336 -14.94222 -14.54907 -14.41579 -14.22869 -14.01805 -13.95152 -13.79044 -13.60590 -13.45980 -13.07017 -12.94953 -12.72375 -12.56352 -12.29782 -12.23493 -11.97612 -11.77279 -11.72201 -11.46841 -11.38064 -11.11392 -11.05050 -10.58112 -10.35529 -9.54133 -9.38078 -9.14239 -8.74317 -6.31899 -0.43783 0.10588 0.89056 1.00733 1.23984 1.45567 1.49298 1.53201 1.60569 1.73821 2.40282 2.50102 2.82355 2.94472 3.02797 3.08917 3.28725 3.74184 3.84514 3.87061 4.01951 4.17556 4.20030 4.25122 4.29107 4.30806 4.46203 4.67437 4.75141 4.75881 4.79066 4.82757 4.91505 4.97205 5.01416 5.09437 5.10974 5.23719 5.26540 5.28216 5.45481 5.55430 5.78019 5.85930 6.05515 6.10112 6.27351 6.42447 6.60179 6.64303 7.41211 8.61596 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.003268 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.778682 B = 8566.130660 C = 9794.632777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.296 3.704 3 C -0.128 4.128 4 C -0.071 4.071 5 C -0.240 4.240 6 S 0.234 5.766 7 C 0.069 3.931 8 N -0.532 5.532 9 C 0.098 3.902 10 C -0.109 4.109 11 C 0.054 3.946 12 H 0.092 0.908 13 N -0.528 5.528 14 C 0.059 3.941 15 C -0.113 4.113 16 C -0.118 4.118 17 C 0.031 3.969 18 H 0.020 0.980 19 C -0.610 4.610 20 H 0.011 0.989 21 C -0.011 4.011 22 N -0.933 5.933 23 Si 1.079 2.921 24 H -0.288 1.288 25 H -0.273 1.273 26 H -0.242 1.242 27 C 0.077 3.923 28 C 0.515 3.485 29 O -0.510 6.510 30 H 0.183 0.817 31 H 0.207 0.793 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.034 0.966 41 H 0.043 0.957 42 H 0.252 0.748 43 H 0.067 0.933 44 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.823 -7.150 -19.286 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.019 4.019 3 C -0.150 4.150 4 C -0.100 4.100 5 C -0.376 4.376 6 S 0.498 5.502 7 C -0.151 4.151 8 N -0.256 5.256 9 C -0.025 4.025 10 C -0.147 4.147 11 C -0.058 4.058 12 H 0.109 0.891 13 N -0.254 5.254 14 C -0.067 4.067 15 C -0.151 4.151 16 C -0.156 4.156 17 C 0.011 3.989 18 H 0.038 0.962 19 C -0.648 4.648 20 H 0.029 0.971 21 C -0.210 4.210 22 N -0.568 5.568 23 Si 0.900 3.100 24 H -0.214 1.214 25 H -0.198 1.198 26 H -0.166 1.166 27 C -0.050 4.050 28 C 0.303 3.697 29 O -0.383 6.383 30 H 0.200 0.800 31 H 0.224 0.776 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.153 0.847 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -15.747 -5.116 -18.791 25.045 hybrid contribution -0.863 -2.933 0.514 3.100 sum -16.610 -8.048 -18.278 25.976 Atomic orbital electron populations 1.81309 1.11980 1.11251 1.08491 1.24855 0.91621 0.92458 0.92917 1.16262 0.85441 1.16965 0.96340 1.20959 0.91425 0.99769 0.97830 1.25913 1.00903 1.10007 1.00757 1.84711 0.95901 1.60289 1.09312 1.22162 1.01241 1.02266 0.89390 1.45236 1.10566 1.60764 1.08987 1.22704 0.77835 1.01677 1.00242 1.22934 0.95426 1.01835 0.94456 1.22300 0.94608 0.94466 0.94436 0.89101 1.61975 1.05580 1.23267 1.34538 1.22248 0.94894 0.94906 0.94662 1.21644 0.96374 0.97207 0.99889 1.21896 0.96283 0.99244 0.98184 1.18872 0.92762 0.93445 0.93783 0.96207 1.22127 1.10573 0.92843 1.39215 0.97062 1.27101 0.92490 1.07252 0.94168 1.70972 1.42150 1.25783 1.17943 0.83613 0.78344 0.72187 0.75815 1.21426 1.19845 1.16650 1.22040 0.90834 0.97480 0.94670 1.21592 0.87712 0.75845 0.84570 1.90734 1.14571 1.51429 1.81595 0.79963 0.77601 0.88875 0.88723 0.84740 0.87354 0.86798 0.94737 0.91529 0.89430 0.94683 0.93871 0.93887 0.91477 0.97542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.88 18.22 19.01 0.35 -9.53 16 2 C 0.30 5.70 12.36 88.33 1.09 6.80 16 3 C -0.13 -2.30 5.88 -20.71 -0.12 -2.42 16 4 C -0.07 -0.87 10.35 22.73 0.24 -0.64 16 5 C -0.24 -2.94 11.10 66.66 0.74 -2.20 16 6 S 0.23 4.96 20.92 -56.49 -1.18 3.78 16 7 C 0.07 1.51 6.96 83.29 0.58 2.09 16 8 N -0.53 -12.29 3.10 -634.08 -1.97 -14.26 16 9 C 0.10 1.62 5.51 86.91 0.48 2.09 16 10 C -0.11 -1.59 5.39 31.73 0.17 -1.42 16 11 C 0.05 1.32 2.66 44.91 0.12 1.44 16 12 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 13 N -0.53 -16.60 4.50 -871.15 -3.92 -20.52 16 14 C 0.06 1.51 5.18 86.33 0.45 1.95 16 15 C -0.11 -3.38 6.09 30.65 0.19 -3.20 16 16 C -0.12 -4.94 5.00 30.68 0.15 -4.79 16 17 C 0.03 1.49 1.86 -11.49 -0.02 1.47 16 18 H 0.02 0.99 6.71 -2.39 -0.02 0.98 16 19 C -0.61 -36.26 8.76 25.60 0.22 -36.04 16 20 H 0.01 0.73 7.99 -2.91 -0.02 0.71 16 21 C -0.01 -0.68 5.27 84.65 0.45 -0.23 16 22 N -0.93 -60.01 13.70 21.45 0.29 -59.72 16 23 Si 1.08 51.80 26.56 68.60 1.82 53.62 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.24 -10.24 5.96 99.48 0.59 -9.65 16 27 C 0.08 3.31 4.55 86.33 0.39 3.70 16 28 C 0.51 15.12 7.55 87.90 0.66 15.79 16 29 O -0.51 -19.20 13.36 -3.04 -0.04 -19.24 16 30 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 31 H 0.21 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.09 1.49 6.52 -2.39 -0.02 1.48 16 33 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 34 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.11 1.53 7.43 -2.38 -0.02 1.51 16 36 H 0.11 1.92 6.34 -2.39 -0.02 1.90 16 37 H 0.03 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.04 1.90 5.48 -2.39 -0.01 1.89 16 42 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 43 H 0.07 3.22 5.47 -2.38 -0.01 3.21 16 44 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -77.32 360.85 2.02 -75.30 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 0.88 Total: 6.17 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 5.79 Total: -15.59 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -5.25 Total: -104.03 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.04 Total: -19.24 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 1.82 Total: 53.62 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -1.18 Total: 3.78 kcal Total: -77.32 2.02 -75.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.585 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds