Wall clock time and date at job start Wed Apr 1 2020 03:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.44589 * 123.57717 * 141.17390 * 3 2 1 5 5 C 1.32622 * 113.14612 * 180.02562 * 4 3 2 6 6 S 1.75463 * 110.78324 * 359.76125 * 5 4 3 7 7 C 1.36991 * 123.57801 * 321.21684 * 3 2 1 8 8 N 1.38797 * 124.64883 * 359.93530 * 7 3 2 9 9 C 1.46767 * 124.34737 * 354.14100 * 8 7 3 10 10 C 1.54693 * 105.53281 * 196.89972 * 9 8 7 11 11 C 1.54635 * 101.66587 * 334.73745 * 10 9 8 12 12 H 1.09003 * 110.48595 * 265.90303 * 11 10 9 13 13 N 1.46897 * 110.48365 * 143.39649 * 11 10 9 14 14 C 1.46850 * 110.99952 * 57.88852 * 13 11 10 15 15 C 1.53041 * 109.51145 * 174.16601 * 14 13 11 16 16 C 1.53089 * 109.29161 * 59.18455 * 15 14 13 17 17 C 1.53118 * 109.15641 * 302.33578 * 16 15 14 18 18 H 1.09000 * 109.50212 * 297.71642 * 17 16 15 19 19 C 1.50692 * 109.54074 * 177.61811 * 17 16 15 20 20 H 1.08003 * 120.00273 * 265.36523 * 19 17 16 21 21 C 1.37879 * 120.00051 * 85.35772 * 19 17 16 22 22 N 1.31514 * 119.99989 * 185.05859 * 21 19 17 23 23 Si 1.86799 * 120.00303 * 5.05959 * 21 19 17 24 24 H 1.48501 * 109.47184 * 94.88438 * 23 21 19 25 25 H 1.48496 * 109.47324 * 214.88928 * 23 21 19 26 26 H 1.48500 * 109.46803 * 334.88789 * 23 21 19 27 27 C 1.46847 * 111.00107 * 293.67678 * 13 11 10 28 28 C 1.34418 * 124.35232 * 174.10991 * 8 7 3 29 29 O 1.21282 * 124.93689 * 359.65296 * 28 8 7 30 30 H 1.07997 * 123.42736 * 0.05671 * 4 3 2 31 31 H 1.08002 * 124.60487 * 180.02562 * 5 4 3 32 32 H 1.08998 * 110.24764 * 315.98578 * 9 8 7 33 33 H 1.08997 * 110.25071 * 77.90324 * 9 8 7 34 34 H 1.09003 * 111.08299 * 216.62472 * 10 9 8 35 35 H 1.08996 * 110.94813 * 92.79382 * 10 9 8 36 36 H 1.09002 * 109.46052 * 294.17370 * 14 13 11 37 37 H 1.08994 * 109.46430 * 54.15345 * 14 13 11 38 38 H 1.09010 * 109.49863 * 179.11283 * 15 14 13 39 39 H 1.08997 * 109.50407 * 299.22525 * 15 14 13 40 40 H 1.08999 * 109.52591 * 182.43308 * 16 15 14 41 41 H 1.08997 * 109.53022 * 62.23929 * 16 15 14 42 42 H 0.97006 * 120.00281 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.46269 * 305.85419 * 27 13 11 44 44 H 1.08995 * 109.46312 * 65.83522 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3672 0.9395 -0.7553 5 6 4.6716 0.7526 -0.6051 6 16 4.9875 -0.5880 0.4819 7 6 3.3261 -0.8887 0.7149 8 7 2.8117 -1.8929 1.5233 9 6 1.3853 -2.0659 1.8225 10 6 1.3310 -2.9921 3.0603 11 6 2.6696 -3.7565 2.9377 12 1 2.5235 -4.6997 2.4112 13 7 3.2488 -3.9953 4.2664 14 6 2.3199 -4.7498 5.1175 15 6 3.0092 -5.1049 6.4369 16 6 3.4458 -3.8181 7.1419 17 6 4.3738 -3.0276 6.2154 18 1 5.2694 -3.6142 6.0106 19 6 4.7623 -1.7310 6.8777 20 1 4.2037 -0.8301 6.6705 21 6 5.8307 -1.6946 7.7484 22 7 6.1087 -0.5879 8.4023 23 14 6.8835 -3.2171 7.9992 24 1 8.0652 -3.1552 7.1020 25 1 7.3372 -3.2780 9.4119 26 1 6.0850 -4.4286 7.6831 27 6 3.6451 -2.7324 4.9024 28 6 3.5557 -2.8322 2.1322 29 8 4.7621 -2.9247 2.0485 30 1 2.9450 1.7143 -1.3779 31 1 5.4355 1.3478 -1.0834 32 1 0.9282 -1.1031 2.0506 33 1 0.8770 -2.5339 0.9794 34 1 0.4844 -3.6762 3.0013 35 1 1.2970 -2.4102 3.9812 36 1 1.4381 -4.1420 5.3206 37 1 2.0206 -5.6647 4.6064 38 1 2.3145 -5.6514 7.0749 39 1 3.8833 -5.7243 6.2357 40 1 3.9755 -4.0679 8.0612 41 1 2.5682 -3.2163 7.3782 42 1 6.8607 -0.5622 9.0146 43 1 4.3082 -2.1820 4.2349 44 1 2.7572 -2.1342 5.1066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595621583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:39 Heat of formation + Delta-G solvation = 46.460963 kcal Electronic energy + Delta-G solvation = -28422.395617 eV Core-core repulsion = 24659.794790 eV Total energy + Delta-G solvation = -3762.600826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50418 -38.75171 -37.98981 -36.53282 -36.05623 -34.22529 -32.52436 -30.97806 -30.37711 -28.91507 -27.13759 -25.39611 -24.99627 -23.65645 -22.35097 -21.25247 -20.94458 -20.48378 -18.81729 -18.44642 -17.39403 -17.06652 -16.77011 -15.87035 -15.70179 -15.13443 -14.67861 -14.47233 -14.32925 -14.17299 -14.16958 -13.94462 -13.57993 -13.54753 -13.20537 -12.96108 -12.79337 -12.69656 -12.54333 -12.51794 -12.15317 -12.13293 -11.77261 -11.51157 -11.13916 -11.07054 -11.03141 -10.67541 -10.60696 -10.21257 -10.05376 -9.83319 -9.58062 -9.39904 -8.96284 -8.64228 -8.49916 -8.25730 -8.03181 -6.07527 -4.07137 0.48124 0.96070 1.69199 1.75983 2.29231 2.44134 2.53759 3.30992 3.32297 3.41077 3.45378 3.79081 3.95629 4.02163 4.38168 4.44961 4.54486 4.64374 4.67786 4.96055 5.10579 5.14381 5.21585 5.36919 5.42456 5.45252 5.47293 5.58848 5.71168 5.76416 5.86709 5.92348 6.00686 6.09191 6.21044 6.28428 6.38072 6.40131 6.59293 6.75706 6.82960 7.16181 7.32907 7.35227 7.36106 7.53782 7.70816 7.81567 8.50729 8.95759 9.56047 11.05484 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.003838 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.327693 B = 7294.231364 C = 8439.025713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.284 3.716 3 C -0.138 4.138 4 C -0.069 4.069 5 C -0.268 4.268 6 S 0.289 5.711 7 C 0.093 3.907 8 N -0.534 5.534 9 C 0.100 3.900 10 C -0.168 4.168 11 C 0.064 3.936 12 H 0.123 0.877 13 N -0.517 5.517 14 C 0.063 3.937 15 C -0.120 4.120 16 C -0.115 4.115 17 C 0.024 3.976 18 H 0.041 0.959 19 C -0.514 4.514 20 H 0.069 0.931 21 C 0.074 3.926 22 N -0.900 5.900 23 Si 0.873 3.127 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.256 1.256 27 C 0.065 3.935 28 C 0.520 3.480 29 O -0.463 6.463 30 H 0.152 0.848 31 H 0.175 0.825 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.263 0.737 43 H 0.069 0.931 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.399 -3.638 -17.349 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.031 4.031 3 C -0.159 4.159 4 C -0.099 4.099 5 C -0.404 4.404 6 S 0.552 5.448 7 C -0.128 4.128 8 N -0.259 5.259 9 C -0.024 4.024 10 C -0.208 4.208 11 C -0.048 4.048 12 H 0.141 0.859 13 N -0.241 5.241 14 C -0.064 4.064 15 C -0.158 4.158 16 C -0.153 4.153 17 C 0.005 3.995 18 H 0.059 0.941 19 C -0.552 4.552 20 H 0.087 0.913 21 C -0.127 4.127 22 N -0.538 5.538 23 Si 0.700 3.300 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.181 1.181 27 C -0.061 4.061 28 C 0.308 3.692 29 O -0.332 6.332 30 H 0.170 0.830 31 H 0.192 0.808 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.561 -4.578 -16.753 18.565 hybrid contribution -1.170 0.667 -0.240 1.369 sum -7.732 -3.911 -16.992 19.074 Atomic orbital electron populations 1.81279 1.11448 1.08721 1.09689 1.24827 0.91674 0.93451 0.93135 1.16013 0.85743 1.04066 1.10065 1.20622 0.91705 0.98360 0.99213 1.25621 1.00173 1.06015 1.08576 1.84379 0.94970 1.25007 1.40400 1.22036 1.01157 0.93225 0.96390 1.45276 1.09973 1.25875 1.44754 1.22476 0.79180 1.01912 0.98803 1.23442 0.99733 0.99280 0.98336 1.22417 0.90924 0.97907 0.93569 0.85903 1.62195 1.39249 1.22510 1.00152 1.22050 0.93346 0.96875 0.94147 1.21681 1.00001 0.99429 0.94711 1.21941 0.99953 0.94193 0.99241 1.19115 0.94326 0.96351 0.89728 0.94123 1.20903 1.14690 0.94125 1.25483 0.91267 1.24990 0.97027 0.95806 0.94921 1.69916 1.29147 1.27130 1.27593 0.86911 0.81192 0.84708 0.77164 1.20350 1.21640 1.18062 1.22393 0.98253 0.87581 0.97894 1.21163 0.88116 0.80837 0.79111 1.90778 1.12400 1.70706 1.59341 0.83042 0.80753 0.89413 0.89772 0.88138 0.88518 0.94715 0.91508 0.92545 0.91732 0.92770 0.93113 0.92701 0.91228 0.95413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.78 18.22 41.84 0.76 -5.02 16 2 C 0.28 3.43 12.36 -22.47 -0.28 3.15 16 3 C -0.14 -1.55 5.88 -105.92 -0.62 -2.17 16 4 C -0.07 -0.61 10.35 -38.98 -0.40 -1.01 16 5 C -0.27 -2.26 11.10 28.83 0.32 -1.94 16 6 S 0.29 3.36 20.92 -107.50 -2.25 1.11 16 7 C 0.09 1.16 6.96 -14.85 -0.10 1.05 16 8 N -0.53 -6.94 3.10 -114.29 -0.35 -7.29 16 9 C 0.10 1.08 5.51 -3.01 -0.02 1.06 16 10 C -0.17 -1.75 5.45 -24.98 -0.14 -1.89 16 11 C 0.06 0.82 3.19 -67.72 -0.22 0.61 16 12 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 13 N -0.52 -8.32 4.74 -226.70 -1.08 -9.39 16 14 C 0.06 0.88 5.04 -3.83 -0.02 0.86 16 15 C -0.12 -1.93 6.09 -26.66 -0.16 -2.09 16 16 C -0.12 -2.33 4.96 -26.62 -0.13 -2.46 16 17 C 0.02 0.55 1.79 -91.69 -0.16 0.39 16 18 H 0.04 1.00 5.71 -51.93 -0.30 0.70 16 19 C -0.51 -14.14 8.87 -34.44 -0.31 -14.44 16 20 H 0.07 2.07 8.05 -52.48 -0.42 1.65 16 21 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 22 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 23 Si 0.87 21.51 26.41 -169.99 -4.49 17.02 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.26 -5.97 5.85 56.52 0.33 -5.64 16 27 C 0.07 1.29 4.09 -3.83 -0.02 1.27 16 28 C 0.52 7.75 5.89 -10.86 -0.06 7.68 16 29 O -0.46 -8.25 15.22 5.56 0.08 -8.17 16 30 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.09 1.00 6.51 -51.93 -0.34 0.67 16 33 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.17 5.89 -51.93 -0.31 0.87 16 36 H 0.03 0.46 7.06 -51.93 -0.37 0.09 16 37 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.16 6.74 -51.93 -0.35 0.81 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.07 1.51 6.14 -51.93 -0.32 1.19 16 44 H 0.03 0.54 6.51 -51.93 -0.34 0.20 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -32.30 359.56 -9.29 -41.59 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.74 Total: -0.85 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.42 Total: -7.89 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.11 Total: -48.23 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.49 Total: 17.02 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.25 Total: 1.11 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.30 -9.29 -41.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.049 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds