Wall clock time and date at job start Wed Apr 1 2020 03:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.44582 * 123.58315 * 356.34719 * 3 2 1 5 5 C 1.32618 * 113.15122 * 180.31892 * 4 3 2 6 6 S 1.75466 * 110.77840 * 359.74405 * 5 4 3 7 7 C 1.36986 * 123.57444 * 176.18126 * 3 2 1 8 8 N 1.38807 * 124.64836 * 359.96604 * 7 3 2 9 9 C 1.46756 * 124.34919 * 5.86279 * 8 7 3 10 10 C 1.54481 * 105.47594 * 162.98329 * 9 8 7 11 11 C 1.54628 * 101.76155 * 25.41705 * 10 9 8 12 12 H 1.09001 * 110.48932 * 94.00966 * 11 10 9 13 13 N 1.46906 * 110.48833 * 216.52342 * 11 10 9 14 14 C 1.46842 * 110.99564 * 64.20394 * 13 11 10 15 15 C 1.53036 * 109.52373 * 174.16411 * 14 13 11 16 16 C 1.53118 * 109.28092 * 59.17760 * 15 14 13 17 17 C 1.53120 * 109.16021 * 302.35228 * 16 15 14 18 18 H 1.09005 * 109.49932 * 297.67109 * 17 16 15 19 19 C 1.50697 * 109.50381 * 177.59119 * 17 16 15 20 20 H 1.07996 * 120.00061 * 239.99421 * 19 17 16 21 21 C 1.37879 * 119.99979 * 60.00242 * 19 17 16 22 22 N 1.31514 * 119.99822 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 120.00255 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47332 * 89.99486 * 23 21 19 25 25 H 1.48501 * 109.47525 * 209.99608 * 23 21 19 26 26 H 1.48503 * 109.46841 * 329.99602 * 23 21 19 27 27 C 1.46847 * 110.99676 * 299.99952 * 13 11 10 28 28 C 1.34652 * 124.31159 * 185.99608 * 8 7 3 29 29 O 1.21291 * 125.07707 * 0.39788 * 28 8 7 30 30 H 1.08002 * 123.42720 * 0.08043 * 4 3 2 31 31 H 1.08005 * 124.61408 * 179.77132 * 5 4 3 32 32 H 1.08996 * 110.25033 * 43.98188 * 9 8 7 33 33 H 1.09004 * 110.25002 * 281.98261 * 9 8 7 34 34 H 1.08992 * 110.96927 * 267.30139 * 10 9 8 35 35 H 1.08999 * 111.00377 * 143.54391 * 10 9 8 36 36 H 1.09008 * 109.46413 * 54.14883 * 14 13 11 37 37 H 1.08996 * 109.46517 * 294.18095 * 14 13 11 38 38 H 1.08998 * 109.50858 * 179.12484 * 15 14 13 39 39 H 1.09006 * 109.50332 * 299.20143 * 15 14 13 40 40 H 1.09002 * 109.52156 * 62.25211 * 16 15 14 41 41 H 1.08992 * 109.52763 * 182.44577 * 16 15 14 42 42 H 0.97007 * 120.00117 * 180.02562 * 22 21 19 43 43 H 1.08999 * 109.46724 * 65.82258 * 27 13 11 44 44 H 1.08999 * 109.46328 * 305.84782 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3683 -1.2010 0.0767 5 6 4.6725 -0.9604 0.0682 6 16 4.9869 0.7623 -0.0423 7 6 3.3251 1.1398 -0.0760 8 7 2.8096 2.4256 -0.1625 9 6 1.3829 2.7543 -0.0613 10 6 1.3286 4.2716 0.2239 11 6 2.6657 4.7546 -0.3843 12 1 2.5182 5.0925 -1.4101 13 7 3.2430 5.8308 0.4322 14 6 3.5951 5.3436 1.7719 15 6 4.3236 6.4471 2.5423 16 6 3.4146 7.6748 2.6478 17 6 3.0233 8.1328 1.2401 18 1 3.9177 8.4290 0.6921 19 6 2.0808 9.3048 1.3362 20 1 1.0892 9.2363 0.9140 21 6 2.4846 10.4645 1.9631 22 7 3.6921 10.5478 2.4776 23 14 1.3162 11.9171 2.0829 24 1 0.5221 11.8118 3.3333 25 1 2.0967 13.1804 2.0970 26 1 0.4009 11.9137 0.9134 27 6 2.3324 6.9804 0.5076 28 6 3.5547 3.5309 -0.3527 29 8 4.7609 3.5452 -0.4788 30 1 2.9470 -2.1935 0.1388 31 1 5.4371 -1.7213 0.1216 32 1 0.9252 2.2000 0.7580 33 1 0.8762 2.5286 -0.9996 34 1 1.2949 4.4660 1.2958 35 1 0.4807 4.7340 -0.2813 36 1 4.2452 4.4731 1.6827 37 1 2.6874 5.0654 2.3074 38 1 4.5712 6.0906 3.5421 39 1 5.2390 6.7158 2.0148 40 1 2.5169 7.4161 3.2094 41 1 3.9455 8.4784 3.1579 42 1 3.9761 11.3636 2.9189 43 1 1.4306 6.6946 1.0490 44 1 2.0653 7.2988 -0.5001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595621584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:43 Heat of formation + Delta-G solvation = 44.047886 kcal Electronic energy + Delta-G solvation = -28016.664616 eV Core-core repulsion = 24253.959150 eV Total energy + Delta-G solvation = -3762.705465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52724 -38.75271 -37.94198 -36.57617 -36.15001 -34.20496 -32.48613 -30.82006 -29.95547 -28.98598 -27.05151 -25.38006 -25.01772 -23.49053 -22.05965 -21.74737 -21.06226 -20.37738 -18.68925 -18.40434 -17.46275 -17.10641 -16.41456 -15.93044 -15.66817 -14.92850 -14.77212 -14.63413 -14.46627 -14.21608 -14.04834 -13.96981 -13.71268 -13.37919 -13.11319 -12.98590 -12.81196 -12.72437 -12.51348 -12.24386 -12.18671 -11.78479 -11.71313 -11.47877 -11.20929 -10.98456 -10.78754 -10.71710 -10.70414 -10.16208 -10.10977 -9.89750 -9.52811 -9.16123 -8.79172 -8.78021 -8.37020 -8.35349 -7.88485 -6.01765 -4.08600 0.35357 0.81514 1.55173 1.63079 2.22637 2.32849 2.45382 3.21327 3.27909 3.35407 3.37490 3.76273 3.97768 4.00700 4.37145 4.46169 4.52618 4.58364 4.69609 4.83696 5.09018 5.20082 5.28395 5.33062 5.47403 5.54592 5.58398 5.61174 5.74147 5.81768 5.95430 5.99467 6.10919 6.25362 6.31476 6.39342 6.62003 6.66107 6.83013 7.11541 7.24306 7.27690 7.43236 7.54375 7.64934 7.71828 8.01147 8.11625 8.40559 8.95165 9.56126 11.04159 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.002706 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.959878 B =10343.428468 C =11115.861033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.281 3.719 3 C -0.137 4.137 4 C -0.067 4.067 5 C -0.268 4.268 6 S 0.279 5.721 7 C 0.094 3.906 8 N -0.536 5.536 9 C 0.100 3.900 10 C -0.168 4.168 11 C 0.063 3.937 12 H 0.126 0.874 13 N -0.511 5.511 14 C 0.055 3.945 15 C -0.115 4.115 16 C -0.111 4.111 17 C 0.056 3.944 18 H 0.037 0.963 19 C -0.516 4.516 20 H 0.054 0.946 21 C 0.064 3.936 22 N -0.887 5.887 23 Si 0.890 3.110 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.068 3.932 28 C 0.521 3.479 29 O -0.467 6.467 30 H 0.152 0.848 31 H 0.175 0.825 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.093 0.907 42 H 0.260 0.740 43 H 0.027 0.973 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 -22.084 -4.494 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.034 4.034 3 C -0.158 4.158 4 C -0.098 4.098 5 C -0.404 4.404 6 S 0.542 5.458 7 C -0.127 4.127 8 N -0.261 5.261 9 C -0.024 4.024 10 C -0.207 4.207 11 C -0.049 4.049 12 H 0.144 0.856 13 N -0.235 5.235 14 C -0.072 4.072 15 C -0.153 4.153 16 C -0.149 4.149 17 C 0.037 3.963 18 H 0.055 0.945 19 C -0.555 4.555 20 H 0.072 0.928 21 C -0.138 4.138 22 N -0.525 5.525 23 Si 0.718 3.282 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.058 4.058 28 C 0.309 3.691 29 O -0.337 6.337 30 H 0.170 0.830 31 H 0.192 0.808 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.111 0.889 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.777 -20.885 -4.752 21.492 hybrid contribution -2.470 -0.501 0.575 2.585 sum -0.694 -21.386 -4.178 21.802 Atomic orbital electron populations 1.81306 1.11433 1.07159 1.10811 1.24823 0.91667 0.93733 0.93180 1.16018 0.85801 0.91924 1.22051 1.20644 0.91706 0.97123 1.00288 1.25595 1.00163 1.01031 1.13583 1.84250 0.95204 0.97645 1.68680 1.22046 1.01028 0.87069 1.02574 1.45448 1.10150 1.02804 1.67667 1.22483 0.78882 0.97716 1.03308 1.23402 1.00287 0.92743 1.04303 1.22472 0.90596 0.90057 1.01790 0.85609 1.62173 1.42960 1.04745 1.13603 1.22186 0.98175 0.98130 0.88729 1.21651 0.99929 0.96230 0.97450 1.21679 0.97129 0.95528 1.00602 1.18674 0.96094 0.89960 0.91573 0.94518 1.21098 0.99798 0.97783 1.36836 0.92778 1.24927 0.95062 0.98390 0.95389 1.69886 1.17550 1.27357 1.37710 0.86626 0.80931 0.82235 0.78369 1.20794 1.21226 1.19960 1.22413 0.92897 0.89930 1.00609 1.21407 0.88138 0.84940 0.74655 1.90751 1.12549 1.84944 1.45450 0.82996 0.80762 0.89521 0.89681 0.88726 0.87847 0.92425 0.95443 0.93331 0.91733 0.95107 0.88887 0.92975 0.95457 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.43 18.22 41.84 0.76 -4.67 16 2 C 0.28 3.12 12.37 -22.47 -0.28 2.84 16 3 C -0.14 -1.35 5.88 -105.93 -0.62 -1.97 16 4 C -0.07 -0.49 10.35 -38.98 -0.40 -0.89 16 5 C -0.27 -1.76 11.10 28.83 0.32 -1.44 16 6 S 0.28 2.64 20.93 -107.50 -2.25 0.39 16 7 C 0.09 1.02 6.96 -14.84 -0.10 0.91 16 8 N -0.54 -6.34 3.11 -114.35 -0.36 -6.69 16 9 C 0.10 1.04 5.51 -3.13 -0.02 1.02 16 10 C -0.17 -1.86 5.46 -25.10 -0.14 -2.00 16 11 C 0.06 0.86 3.15 -67.72 -0.21 0.65 16 12 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 13 N -0.51 -8.78 4.73 -226.70 -1.07 -9.85 16 14 C 0.06 0.94 4.83 -3.84 -0.02 0.93 16 15 C -0.11 -2.20 6.09 -26.65 -0.16 -2.36 16 16 C -0.11 -2.52 5.02 -26.61 -0.13 -2.66 16 17 C 0.06 1.32 2.26 -91.69 -0.21 1.12 16 18 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 19 C -0.52 -13.52 8.56 -34.44 -0.29 -13.82 16 20 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -24.68 11.35 55.43 0.63 -24.05 16 23 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.07 1.30 4.30 -3.83 -0.02 1.28 16 28 C 0.52 7.24 5.90 -10.75 -0.06 7.18 16 29 O -0.47 -7.60 15.40 5.55 0.09 -7.51 16 30 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.18 0.66 8.06 -52.48 -0.42 0.24 16 32 H 0.09 0.92 6.50 -51.93 -0.34 0.58 16 33 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 34 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.96 6.29 -51.92 -0.33 0.64 16 37 H 0.03 0.45 6.41 -51.93 -0.33 0.12 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.03 0.51 7.18 -51.93 -0.37 0.13 16 44 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -29.62 363.26 -9.95 -39.57 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.76 Total: -0.74 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.45 Total: -7.60 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.04 Total: -45.26 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.09 Total: -7.51 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.25 Total: 0.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.62 -9.95 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.618 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds