Wall clock time and date at job start Wed Apr 1 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.44582 * 123.58315 * 356.34719 * 3 2 1 5 5 C 1.32618 * 113.15122 * 180.31892 * 4 3 2 6 6 S 1.75466 * 110.77840 * 359.74405 * 5 4 3 7 7 C 1.36986 * 123.57444 * 176.18126 * 3 2 1 8 8 N 1.38807 * 124.64836 * 359.96604 * 7 3 2 9 9 C 1.46756 * 124.34919 * 5.86279 * 8 7 3 10 10 C 1.54481 * 105.47594 * 162.98329 * 9 8 7 11 11 C 1.54628 * 101.76155 * 25.41705 * 10 9 8 12 12 H 1.09001 * 110.48932 * 94.00966 * 11 10 9 13 13 N 1.46906 * 110.48833 * 216.52342 * 11 10 9 14 14 C 1.46842 * 110.99564 * 64.20394 * 13 11 10 15 15 C 1.53036 * 109.52373 * 174.16411 * 14 13 11 16 16 C 1.53118 * 109.28092 * 59.17760 * 15 14 13 17 17 C 1.53120 * 109.16021 * 302.35228 * 16 15 14 18 18 H 1.09005 * 109.49932 * 297.67109 * 17 16 15 19 19 C 1.50697 * 109.50381 * 177.59119 * 17 16 15 20 20 H 1.07996 * 120.00061 * 239.99421 * 19 17 16 21 21 C 1.37879 * 119.99979 * 60.00242 * 19 17 16 22 22 N 1.31514 * 119.99822 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 120.00255 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47332 * 89.99486 * 23 21 19 25 25 H 1.48501 * 109.47525 * 209.99608 * 23 21 19 26 26 H 1.48503 * 109.46841 * 329.99602 * 23 21 19 27 27 C 1.46847 * 110.99676 * 299.99952 * 13 11 10 28 28 C 1.34652 * 124.31159 * 185.99608 * 8 7 3 29 29 O 1.21291 * 125.07707 * 0.39788 * 28 8 7 30 30 H 1.08002 * 123.42720 * 0.08043 * 4 3 2 31 31 H 1.08005 * 124.61408 * 179.77132 * 5 4 3 32 32 H 1.08996 * 110.25033 * 43.98188 * 9 8 7 33 33 H 1.09004 * 110.25002 * 281.98261 * 9 8 7 34 34 H 1.08992 * 110.96927 * 267.30139 * 10 9 8 35 35 H 1.08999 * 111.00377 * 143.54391 * 10 9 8 36 36 H 1.09008 * 109.46413 * 54.14883 * 14 13 11 37 37 H 1.08996 * 109.46517 * 294.18095 * 14 13 11 38 38 H 1.08998 * 109.50858 * 179.12484 * 15 14 13 39 39 H 1.09006 * 109.50332 * 299.20143 * 15 14 13 40 40 H 1.09002 * 109.52156 * 62.25211 * 16 15 14 41 41 H 1.08992 * 109.52763 * 182.44577 * 16 15 14 42 42 H 0.97007 * 120.00117 * 180.02562 * 22 21 19 43 43 H 1.08999 * 109.46724 * 65.82258 * 27 13 11 44 44 H 1.08999 * 109.46328 * 305.84782 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3683 -1.2010 0.0767 5 6 4.6725 -0.9604 0.0682 6 16 4.9869 0.7623 -0.0423 7 6 3.3251 1.1398 -0.0760 8 7 2.8096 2.4256 -0.1625 9 6 1.3829 2.7543 -0.0613 10 6 1.3286 4.2716 0.2239 11 6 2.6657 4.7546 -0.3843 12 1 2.5182 5.0925 -1.4101 13 7 3.2430 5.8308 0.4322 14 6 3.5951 5.3436 1.7719 15 6 4.3236 6.4471 2.5423 16 6 3.4146 7.6748 2.6478 17 6 3.0233 8.1328 1.2401 18 1 3.9177 8.4290 0.6921 19 6 2.0808 9.3048 1.3362 20 1 1.0892 9.2363 0.9140 21 6 2.4846 10.4645 1.9631 22 7 3.6921 10.5478 2.4776 23 14 1.3162 11.9171 2.0829 24 1 0.5221 11.8118 3.3333 25 1 2.0967 13.1804 2.0970 26 1 0.4009 11.9137 0.9134 27 6 2.3324 6.9804 0.5076 28 6 3.5547 3.5309 -0.3527 29 8 4.7609 3.5452 -0.4788 30 1 2.9470 -2.1935 0.1388 31 1 5.4371 -1.7213 0.1216 32 1 0.9252 2.2000 0.7580 33 1 0.8762 2.5286 -0.9996 34 1 1.2949 4.4660 1.2958 35 1 0.4807 4.7340 -0.2813 36 1 4.2452 4.4731 1.6827 37 1 2.6874 5.0654 2.3074 38 1 4.5712 6.0906 3.5421 39 1 5.2390 6.7158 2.0148 40 1 2.5169 7.4161 3.2094 41 1 3.9455 8.4784 3.1579 42 1 3.9761 11.3636 2.9189 43 1 1.4306 6.6946 1.0490 44 1 2.0653 7.2988 -0.5001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:42 Heat of formation + Delta-G solvation = 26.718572 kcal Electronic energy + Delta-G solvation = -28017.416071 eV Core-core repulsion = 24253.959150 eV Total energy + Delta-G solvation = -3763.456921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.53317 -39.83811 -39.10713 -37.59839 -36.99721 -35.72020 -34.05463 -32.03437 -31.68353 -29.78799 -28.17234 -26.95175 -26.14646 -24.73590 -23.38629 -23.09076 -21.79376 -21.50009 -20.16691 -19.44393 -18.51870 -18.34366 -17.85171 -17.03255 -16.73162 -16.38330 -15.97951 -15.76134 -15.36961 -15.32349 -15.21262 -14.99717 -14.76019 -14.64204 -14.44829 -14.30831 -13.98843 -13.80362 -13.70076 -13.52821 -13.19880 -13.02920 -12.85172 -12.78703 -12.71869 -12.55097 -12.37047 -11.92698 -11.84755 -11.73274 -11.47651 -11.42914 -11.08838 -10.85999 -10.66840 -10.36214 -9.50492 -9.22412 -9.14549 -8.05642 -6.19489 -0.43912 0.10435 0.88911 1.01526 1.23257 1.43239 1.44586 1.46713 1.54005 1.60760 2.40104 2.44178 2.78065 2.97359 3.08211 3.22250 3.41681 3.60369 3.75586 3.83868 4.07514 4.13498 4.23914 4.25828 4.28305 4.41463 4.55563 4.63099 4.73106 4.79365 4.80836 4.87624 4.95281 4.98233 5.05336 5.11616 5.16151 5.26063 5.35847 5.41769 5.50857 5.66142 5.89655 6.08549 6.12455 6.20067 6.42664 6.43533 6.62720 6.93832 7.48752 8.99142 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.002706 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.959878 B =10343.428468 C =11115.861033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.295 3.705 3 C -0.131 4.131 4 C -0.073 4.073 5 C -0.239 4.239 6 S 0.252 5.748 7 C 0.066 3.934 8 N -0.534 5.534 9 C 0.105 3.895 10 C -0.157 4.157 11 C 0.060 3.940 12 H 0.139 0.861 13 N -0.528 5.528 14 C 0.066 3.934 15 C -0.109 4.109 16 C -0.102 4.102 17 C 0.052 3.948 18 H -0.006 1.006 19 C -0.531 4.531 20 H 0.058 0.942 21 C 0.013 3.987 22 N -0.917 5.917 23 Si 0.952 3.048 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.266 1.266 27 C 0.084 3.916 28 C 0.521 3.479 29 O -0.499 6.499 30 H 0.180 0.820 31 H 0.209 0.791 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.029 0.971 41 H 0.057 0.943 42 H 0.259 0.741 43 H 0.037 0.963 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -24.603 -4.844 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.020 4.020 3 C -0.152 4.152 4 C -0.102 4.102 5 C -0.374 4.374 6 S 0.516 5.484 7 C -0.153 4.153 8 N -0.258 5.258 9 C -0.018 4.018 10 C -0.197 4.197 11 C -0.052 4.052 12 H 0.156 0.844 13 N -0.252 5.252 14 C -0.062 4.062 15 C -0.146 4.146 16 C -0.141 4.141 17 C 0.033 3.967 18 H 0.013 0.987 19 C -0.569 4.569 20 H 0.076 0.924 21 C -0.186 4.186 22 N -0.556 5.556 23 Si 0.778 3.222 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.190 1.190 27 C -0.043 4.043 28 C 0.309 3.691 29 O -0.372 6.372 30 H 0.198 0.802 31 H 0.226 0.774 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.142 0.858 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.538 -23.446 -5.107 24.001 hybrid contribution -2.030 0.164 0.666 2.142 sum -1.491 -23.281 -4.441 23.748 Atomic orbital electron populations 1.81323 1.12286 1.08176 1.11777 1.24978 0.91805 0.92829 0.92404 1.16306 0.85240 0.92663 1.21010 1.20933 0.91577 0.97350 1.00297 1.25929 1.00735 0.99588 1.11189 1.84417 0.95017 1.00371 1.68620 1.22210 1.01680 0.86775 1.04643 1.45316 1.10285 1.02912 1.67317 1.22505 0.78303 0.97059 1.03912 1.23346 0.99388 0.93221 1.03712 1.22536 0.91712 0.89084 1.01864 0.84381 1.61973 1.43426 1.05763 1.14013 1.22039 0.98460 0.97062 0.88642 1.21547 0.98604 0.95637 0.98855 1.21463 0.97173 0.95917 0.99514 1.18594 0.94429 0.91448 0.92211 0.98739 1.21505 1.00272 0.98809 1.36336 0.92378 1.25714 0.96463 1.01093 0.95291 1.70045 1.19207 1.27845 1.38539 0.85644 0.79019 0.78888 0.78603 1.20280 1.21381 1.19046 1.22046 0.92751 0.89281 1.00179 1.21344 0.87749 0.85545 0.74495 1.90735 1.13721 1.85531 1.47177 0.80235 0.77392 0.89503 0.88486 0.89569 0.85793 0.91813 0.94184 0.91404 0.93568 0.95259 0.92410 0.93195 0.94484 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.76 18.22 19.00 0.35 -10.42 16 2 C 0.29 5.91 12.37 88.33 1.09 7.00 16 3 C -0.13 -2.25 5.88 -20.71 -0.12 -2.37 16 4 C -0.07 -0.80 10.35 22.73 0.24 -0.57 16 5 C -0.24 -2.32 11.10 66.66 0.74 -1.58 16 6 S 0.25 4.38 20.93 -56.49 -1.18 3.20 16 7 C 0.07 1.34 6.96 83.29 0.58 1.92 16 8 N -0.53 -11.88 3.11 -634.16 -1.97 -13.85 16 9 C 0.11 1.99 5.51 86.83 0.48 2.47 16 10 C -0.16 -3.17 5.46 31.65 0.17 -3.00 16 11 C 0.06 1.55 3.15 44.91 0.14 1.69 16 12 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 13 N -0.53 -17.94 4.73 -871.14 -4.12 -22.06 16 14 C 0.07 2.20 4.83 86.33 0.42 2.61 16 15 C -0.11 -4.23 6.09 30.65 0.19 -4.04 16 16 C -0.10 -4.78 5.02 30.67 0.15 -4.63 16 17 C 0.05 2.54 2.26 -11.49 -0.03 2.52 16 18 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 19 C -0.53 -28.19 8.56 25.60 0.22 -27.98 16 20 H 0.06 2.97 7.74 -2.91 -0.02 2.94 16 21 C 0.01 0.71 5.30 84.66 0.45 1.16 16 22 N -0.92 -52.79 11.35 21.45 0.24 -52.54 16 23 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 C 0.08 3.20 4.30 86.33 0.37 3.57 16 28 C 0.52 14.06 5.90 87.86 0.52 14.57 16 29 O -0.50 -16.21 15.40 -3.06 -0.05 -16.25 16 30 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.21 0.59 8.06 -2.91 -0.02 0.57 16 32 H 0.09 1.67 6.50 -2.39 -0.02 1.65 16 33 H 0.10 1.62 8.05 -2.38 -0.02 1.60 16 34 H 0.09 1.93 5.88 -2.39 -0.01 1.91 16 35 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 2.09 6.29 -2.38 -0.01 2.08 16 37 H 0.04 1.25 6.41 -2.39 -0.02 1.24 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 3.10 6.15 -2.39 -0.01 3.09 16 42 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 43 H 0.04 1.33 7.18 -2.39 -0.02 1.31 16 44 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 Total: -1.00 -66.33 363.26 1.94 -64.39 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.03 Total: 9.32 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 5.61 Total: -6.65 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -5.50 Total: -98.87 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.05 Total: -16.25 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.18 Total: 3.20 kcal Total: -66.33 1.94 -64.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.113 kcal (2) G-P(sol) polarization free energy of solvation -66.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds