Wall clock time and date at job start Wed Apr 1 2020 03:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38249 * 120.00345 * 2 1 4 4 C 1.38212 * 120.00191 * 180.27610 * 3 2 1 5 5 C 1.38256 * 119.99633 * 359.74552 * 4 3 2 6 6 C 1.38217 * 120.00282 * 359.97438 * 5 4 3 7 7 C 1.38218 * 119.99397 * 179.75074 * 2 1 3 8 8 C 1.50700 * 120.00449 * 359.97438 * 7 2 1 9 9 C 1.53002 * 109.46824 * 84.72939 * 8 7 2 10 10 C 1.50704 * 109.46792 * 180.02562 * 9 8 7 11 11 C 1.35236 * 126.07166 * 84.99960 * 10 9 8 12 12 C 1.40408 * 107.86576 * 180.02562 * 11 10 9 13 13 N 1.40160 * 125.96993 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99865 * 359.97438 * 13 12 11 15 15 O 1.21293 * 120.00456 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72968 * 14 13 12 17 17 S 1.80997 * 109.47151 * 180.27780 * 16 14 13 18 18 C 1.76202 * 100.00066 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00172 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99989 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00195 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47157 * 59.99783 * 22 20 18 24 24 H 1.48496 * 109.47271 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46987 * 300.00317 * 22 20 18 26 26 N 1.31208 * 108.05327 * 0.24000 * 12 11 10 27 27 N 1.34970 * 126.06666 * 265.02511 * 10 9 8 28 28 H 0.96998 * 125.97203 * 359.97438 * 27 10 9 29 29 H 1.09000 * 109.47512 * 270.25694 * 1 2 3 30 30 H 1.09003 * 109.47163 * 30.25066 * 1 2 3 31 31 H 1.08998 * 109.47692 * 150.24701 * 1 2 3 32 32 H 1.08007 * 120.00058 * 0.04604 * 3 2 1 33 33 H 1.07998 * 120.00315 * 179.77111 * 4 3 2 34 34 H 1.08003 * 120.00351 * 180.02562 * 5 4 3 35 35 H 1.07998 * 120.00168 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47037 * 324.73135 * 8 7 2 37 37 H 1.08997 * 109.47413 * 204.73113 * 8 7 2 38 38 H 1.08992 * 109.46904 * 60.00394 * 9 8 7 39 39 H 1.09003 * 109.47190 * 299.99814 * 9 8 7 40 40 H 1.08003 * 126.06219 * 0.02562 * 11 10 9 41 41 H 0.97001 * 119.99650 * 180.02562 * 13 12 11 42 42 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 43 43 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 44 44 H 0.97003 * 120.00297 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 -0.0058 5 6 4.2716 -0.0002 -0.0062 6 6 3.5805 -1.1972 -0.0004 7 6 2.1980 -1.1971 0.0052 8 6 1.4444 -2.5021 0.0115 9 6 1.0741 -2.8840 -1.4231 10 6 0.3200 -4.1888 -1.4168 11 6 -1.0096 -4.3391 -1.2208 12 6 -1.3032 -5.7103 -1.2919 13 7 -2.5706 -6.2897 -1.1419 14 6 -3.6442 -5.5100 -0.9055 15 8 -3.5138 -4.3070 -0.8231 16 6 -5.0079 -6.1325 -0.7502 17 16 -6.2333 -4.8343 -0.4521 18 6 -7.6906 -5.8150 -0.3140 19 1 -7.6306 -6.8886 -0.4147 20 6 -8.9157 -5.2078 -0.0746 21 7 -8.9886 -3.8994 0.0497 22 14 -10.4605 -6.2475 0.0726 23 1 -10.3081 -7.2039 1.1984 24 1 -11.6281 -5.3660 0.3274 25 1 -10.6734 -6.9994 -1.1902 26 7 -0.1829 -6.3549 -1.5177 27 7 0.8519 -5.4149 -1.6052 28 1 1.7876 -5.6110 -1.7690 29 1 -0.3634 0.0046 1.0276 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3634 -0.8921 -0.5100 32 1 1.6584 2.1326 0.0008 33 1 4.1205 2.1324 -0.0095 34 1 5.3516 -0.0003 -0.0103 35 1 4.1204 -2.1325 -0.0011 36 1 0.5363 -2.3945 0.6048 37 1 2.0712 -3.2816 0.4447 38 1 1.9822 -2.9917 -2.0163 39 1 0.4473 -2.1046 -1.8563 40 1 -1.7195 -3.5452 -1.0414 41 1 -2.6748 -7.2519 -1.2074 42 1 -5.2661 -6.6737 -1.6606 43 1 -4.9982 -6.8234 0.0928 44 1 -9.8448 -3.4750 0.2166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597843448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:13 Heat of formation + Delta-G solvation = 31.854127 kcal Electronic energy + Delta-G solvation = -25775.340897 eV Core-core repulsion = 22012.106670 eV Total energy + Delta-G solvation = -3763.234226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.50615 -40.64627 -40.36439 -36.31082 -35.41926 -34.56157 -33.42071 -32.31365 -31.81386 -30.17683 -29.26413 -27.71332 -27.64574 -25.15669 -23.35342 -22.83188 -21.95481 -21.33557 -21.06531 -19.81891 -18.35976 -17.73943 -17.56489 -17.15808 -16.85476 -16.79200 -16.65656 -15.96531 -15.89796 -15.57889 -15.03998 -14.89828 -14.73729 -14.48143 -14.33778 -14.14502 -13.91247 -13.82818 -13.56738 -13.14709 -13.14260 -12.97608 -12.85556 -12.71449 -12.63330 -12.26218 -12.06171 -11.84461 -11.75543 -11.62980 -11.59079 -11.10810 -10.95450 -10.28082 -9.85597 -9.63059 -9.45239 -9.38915 -8.64126 -8.32817 -6.10255 0.44397 0.53019 0.69507 1.08912 1.29344 1.40432 1.45815 1.53592 1.72655 2.06105 2.28297 2.37032 2.88607 3.01640 3.26143 3.49875 3.80831 3.87505 3.99296 4.07211 4.15141 4.19183 4.28364 4.28449 4.32779 4.46061 4.50357 4.52685 4.63150 4.73115 4.76742 4.80697 4.87732 5.01092 5.03786 5.10912 5.17785 5.28676 5.40395 5.44772 5.64114 5.67262 5.72606 5.81133 6.01379 6.18385 6.21985 6.47163 6.75261 7.03714 7.08983 8.75869 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.001989 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.617754 B =14070.811548 C =15770.048108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.127 4.127 5 C -0.133 4.133 6 C -0.118 4.118 7 C -0.093 4.093 8 C -0.070 4.070 9 C -0.044 4.044 10 C 0.121 3.879 11 C -0.296 4.296 12 C 0.291 3.709 13 N -0.625 5.625 14 C 0.545 3.455 15 O -0.524 6.524 16 C -0.127 4.127 17 S -0.137 6.137 18 C -0.548 4.548 19 H 0.085 0.915 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 0.996 3.004 23 H -0.263 1.263 24 H -0.280 1.280 25 H -0.263 1.263 26 N -0.336 5.336 27 N -0.452 5.452 28 H 0.455 0.545 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.150 0.850 41 H 0.429 0.571 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.460 2.584 -2.165 28.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.145 4.145 5 C -0.150 4.150 6 C -0.136 4.136 7 C -0.093 4.093 8 C -0.108 4.108 9 C -0.083 4.083 10 C -0.009 4.009 11 C -0.326 4.326 12 C 0.036 3.964 13 N -0.276 5.276 14 C 0.331 3.669 15 O -0.398 6.398 16 C -0.278 4.278 17 S 0.090 5.910 18 C -0.696 4.696 19 H 0.103 0.897 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.818 3.182 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.187 1.187 26 N -0.168 5.168 27 N -0.165 5.165 28 H 0.304 0.696 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.167 0.833 41 H 0.267 0.733 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 29.001 3.584 -2.165 29.302 hybrid contribution -1.363 -1.416 0.107 1.968 sum 27.639 2.168 -2.058 27.800 Atomic orbital electron populations 1.20925 0.91227 1.03385 1.02585 1.19995 0.96233 0.93260 0.99739 1.21278 0.94961 0.97774 1.01117 1.21425 0.94161 0.99160 0.99791 1.21425 1.00945 0.92332 1.00344 1.21297 0.93170 0.99221 0.99897 1.19759 0.94109 0.94084 1.01324 1.20492 1.00182 0.94292 0.95815 1.20320 1.00209 0.89723 0.98053 1.21225 0.92841 0.89020 0.97804 1.21603 0.96245 0.95910 1.18870 1.19338 0.86076 0.92194 0.98805 1.42541 1.02645 1.11805 1.70655 1.20242 0.85207 0.86616 0.74847 1.90642 1.85229 1.15777 1.48104 1.23337 0.93259 1.03839 1.07379 1.85540 1.00207 1.11175 1.94048 1.23190 0.93694 0.95683 1.57012 0.89715 1.26089 1.02506 0.96557 0.93885 1.70164 1.27152 1.10614 1.46698 0.85031 0.75990 0.77781 0.79379 1.18738 1.20516 1.18714 1.77235 0.94202 1.13868 1.31514 1.45795 1.09717 1.02545 1.58409 0.69635 0.91333 0.90942 0.91289 0.85293 0.84472 0.84166 0.84245 0.91439 0.89772 0.87646 0.89034 0.83259 0.73253 0.86392 0.86401 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 9.22 71.24 0.66 -1.64 16 2 C -0.09 -1.65 5.88 -19.87 -0.12 -1.76 16 3 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 4 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 5 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 6 C -0.12 -1.56 9.68 22.27 0.22 -1.34 16 7 C -0.09 -1.48 5.13 -19.86 -0.10 -1.58 16 8 C -0.07 -1.08 4.63 29.85 0.14 -0.94 16 9 C -0.04 -0.66 5.55 29.85 0.17 -0.49 16 10 C 0.12 2.60 6.45 41.39 0.27 2.86 16 11 C -0.30 -8.94 9.52 22.11 0.21 -8.73 16 12 C 0.29 8.85 8.11 133.33 1.08 9.93 16 13 N -0.63 -18.29 5.45 -307.51 -1.68 -19.96 16 14 C 0.54 19.97 7.82 87.66 0.69 20.65 16 15 O -0.52 -23.04 12.99 -3.07 -0.04 -23.08 16 16 C -0.13 -4.83 6.16 71.24 0.44 -4.39 16 17 S -0.14 -7.33 20.57 -56.49 -1.16 -8.49 16 18 C -0.55 -30.54 9.50 67.95 0.65 -29.89 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.82 5.49 84.86 0.47 1.29 16 21 N -0.91 -54.99 13.22 21.65 0.29 -54.70 16 22 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 26 N -0.34 -8.93 12.72 -54.45 -0.69 -9.62 16 27 N -0.45 -8.76 7.35 -48.03 -0.35 -9.11 16 28 H 0.46 5.07 8.96 -213.34 -1.91 3.16 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 31 H 0.07 1.35 5.40 -2.39 -0.01 1.34 16 32 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.07 1.30 7.01 -2.38 -0.02 1.28 16 37 H 0.08 1.08 8.05 -2.39 -0.02 1.06 16 38 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.52 6.88 -2.39 -0.02 1.50 16 40 H 0.15 5.32 5.92 -2.91 -0.02 5.31 16 41 H 0.43 9.55 8.82 -92.71 -0.82 8.73 16 42 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 43 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 44 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -76.39 386.15 2.13 -74.26 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -1.68 Total: 26.63 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 5.41 Total: -20.93 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -2.43 Total: -93.39 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.04 Total: -23.08 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -7.33 SS G_CDS: -1.16 Total: -8.49 kcal Total: -76.39 2.13 -74.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597843448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.115 kcal (2) G-P(sol) polarization free energy of solvation -76.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds