Wall clock time and date at job start Wed Apr 1 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35246 * 126.06659 * 2 1 4 4 C 1.40406 * 107.86354 * 180.15660 * 3 2 1 5 5 N 1.40193 * 125.96856 * 179.83016 * 4 3 2 6 6 C 1.34775 * 120.00584 * 359.72169 * 5 4 3 7 7 O 1.21585 * 119.99554 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00158 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99881 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47023 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47398 * 59.99929 * 10 9 8 12 12 C 1.53002 * 109.47233 * 180.02562 * 10 9 8 13 13 S 1.81404 * 109.46946 * 299.99865 * 10 9 8 14 14 N 1.65595 * 104.44777 * 185.00151 * 13 10 9 15 15 O 1.42098 * 110.53940 * 296.62445 * 13 10 9 16 16 O 1.42101 * 110.54264 * 73.37730 * 13 10 9 17 17 N 1.31212 * 108.05237 * 359.56947 * 4 3 2 18 18 N 1.34962 * 126.07128 * 179.68839 * 2 1 3 19 19 C 1.46502 * 125.97603 * 359.96995 * 18 2 1 20 20 C 1.50695 * 109.47314 * 270.00552 * 19 18 2 21 21 H 1.07999 * 119.99966 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99976 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00011 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99934 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47178 * 90.00148 * 24 22 20 26 26 H 1.48497 * 109.46939 * 210.00471 * 24 22 20 27 27 H 1.48500 * 109.47047 * 329.99999 * 24 22 20 28 28 H 1.08997 * 109.46551 * 270.31461 * 1 2 3 29 29 H 1.09001 * 109.46981 * 30.31622 * 1 2 3 30 30 H 1.09001 * 109.46695 * 150.31334 * 1 2 3 31 31 H 1.07996 * 126.06825 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99661 * 179.72314 * 5 4 3 33 33 H 0.97004 * 120.00087 * 0.02562 * 8 6 5 34 34 H 1.08992 * 109.47085 * 59.99983 * 9 8 6 35 35 H 1.09004 * 109.46923 * 299.99567 * 9 8 6 36 36 H 1.08996 * 109.47407 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.46986 * 299.99797 * 12 10 9 38 38 H 1.09002 * 109.47075 * 59.99068 * 12 10 9 39 39 H 0.97002 * 119.99952 * 149.99608 * 14 13 10 40 40 H 0.96999 * 120.00464 * 329.99815 * 14 13 10 41 41 H 1.08997 * 109.46722 * 30.00941 * 19 18 2 42 42 H 1.09008 * 109.46764 * 150.00607 * 19 18 2 43 43 H 0.97000 * 119.99626 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6546 -0.0037 5 7 4.7737 1.4753 -0.0082 6 6 4.6370 2.8160 -0.0151 7 8 3.5278 3.3139 -0.0178 8 7 5.7298 3.6049 -0.0189 9 6 5.5811 5.0623 -0.0269 10 6 6.9643 5.7160 -0.0306 11 1 7.5124 5.4019 -0.9189 12 6 6.8091 7.2381 -0.0383 13 16 7.8764 5.2094 1.4534 14 7 9.2804 6.0856 1.3947 15 8 7.2211 5.6758 2.6248 16 8 8.3016 3.8582 1.3404 17 7 3.6337 -0.6575 0.0036 18 7 2.3017 -1.0909 0.0059 19 6 1.8502 -2.4845 0.0141 20 6 1.6958 -2.9542 1.4377 21 1 1.9120 -2.2817 2.2546 22 6 1.2786 -4.2425 1.6972 23 7 1.1433 -4.6523 2.9395 24 14 0.9039 -5.4054 0.2841 25 1 2.1367 -6.1447 -0.0887 26 1 -0.1447 -6.3703 0.7018 27 1 0.4220 -4.6256 -0.8842 28 1 -0.3632 0.0056 1.0277 29 1 -0.3633 0.8871 -0.5187 30 1 -0.3633 -0.8928 -0.5090 31 1 1.9720 2.1211 -0.0004 32 1 5.6587 1.0780 -0.0064 33 1 6.6147 3.2076 -0.0171 34 1 5.0327 5.3764 0.8610 35 1 5.0334 5.3667 -0.9189 36 1 7.7945 7.7039 -0.0414 37 1 6.2609 7.5429 -0.9298 38 1 6.2611 7.5520 0.8501 39 1 9.7269 6.3419 2.2168 40 1 9.6563 6.3426 0.5382 41 1 0.8914 -2.5587 -0.4990 42 1 2.5848 -3.1074 -0.4964 43 1 0.8502 -5.5587 3.1220 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611533151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:46 Heat of formation + Delta-G solvation = -17.330510 kcal Electronic energy + Delta-G solvation = -27820.708554 eV Core-core repulsion = 23644.492259 eV Total energy + Delta-G solvation = -4176.216295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.85381 -39.78738 -37.55135 -36.73876 -36.37921 -34.81537 -34.03775 -33.38652 -32.84961 -31.41979 -31.03617 -27.50498 -26.55819 -26.29879 -23.46072 -22.68553 -21.61882 -20.20283 -19.77465 -19.55363 -18.25527 -18.14019 -17.58099 -17.08483 -17.00497 -16.64665 -15.79977 -15.75299 -15.40145 -15.01170 -14.65399 -14.49553 -14.17738 -13.80163 -13.70208 -13.29245 -13.13656 -12.93136 -12.62055 -12.58697 -12.54605 -12.43323 -12.37131 -12.27621 -12.13961 -11.87216 -11.55491 -11.22583 -11.13312 -10.85034 -10.77717 -10.55538 -10.12095 -9.94128 -9.73974 -9.58164 -9.47355 -8.75109 -7.95614 -7.42469 -6.22878 -4.25742 -0.34904 2.18685 2.30494 2.57199 3.02467 3.11974 3.17791 3.23445 3.24547 3.37751 3.63446 3.71040 3.78323 4.20654 4.24080 4.24706 4.36955 4.81344 4.88225 5.05456 5.09913 5.19722 5.34851 5.36553 5.44643 5.64573 5.83681 5.98823 6.07329 6.16347 6.39052 6.44169 6.48967 6.50424 6.62467 6.77557 6.97306 7.32333 7.45883 7.82310 7.90109 8.34970 8.47709 8.62137 8.83328 9.32244 10.89705 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.002139 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.933195 B =13088.844623 C =13733.889297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.095 3.905 3 C -0.286 4.286 4 C 0.285 3.715 5 N -0.641 5.641 6 C 0.719 3.281 7 O -0.560 6.560 8 N -0.766 5.766 9 C 0.153 3.847 10 C -0.603 4.603 11 H 0.146 0.854 12 C -0.137 4.137 13 S 2.612 3.388 14 N -1.249 6.249 15 O -0.949 6.949 16 O -0.954 6.954 17 N -0.319 5.319 18 N -0.318 5.318 19 C 0.232 3.768 20 C -0.540 4.540 21 H 0.081 0.919 22 C 0.078 3.922 23 N -0.887 5.887 24 Si 0.875 3.125 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.264 1.264 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.410 0.590 33 H 0.405 0.595 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.422 0.578 40 H 0.413 0.587 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.566 25.804 -9.656 31.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C -0.317 4.317 4 C 0.031 3.969 5 N -0.290 5.290 6 C 0.418 3.582 7 O -0.435 6.435 8 N -0.427 5.427 9 C 0.028 3.972 10 C -0.712 4.712 11 H 0.164 0.836 12 C -0.195 4.195 13 S 2.701 3.299 14 N -0.922 5.922 15 O -0.938 6.938 16 O -0.943 6.943 17 N -0.149 5.149 18 N -0.100 5.100 19 C 0.113 3.887 20 C -0.578 4.578 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.524 5.524 24 Si 0.701 3.299 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.189 1.189 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.180 0.820 32 H 0.245 0.755 33 H 0.241 0.759 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.252 0.748 40 H 0.239 0.761 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.744 24.192 -8.837 29.193 hybrid contribution 0.781 0.039 -1.191 1.425 sum 14.525 24.231 -10.028 29.978 Atomic orbital electron populations 1.20351 0.87785 1.02667 1.03469 1.21054 0.94903 0.86953 1.00709 1.21246 0.89587 0.99894 1.20955 1.18638 0.86522 0.89228 1.02481 1.41355 1.07924 1.03583 1.76180 1.15460 0.84331 0.80527 0.77915 1.90885 1.23230 1.73508 1.55886 1.45385 1.09011 1.06186 1.82125 1.20962 0.92396 0.77884 1.05991 1.30537 1.10408 1.07436 1.22863 0.83576 1.21573 1.04213 0.88035 1.05718 1.05130 0.74232 0.74485 0.76095 1.53211 1.44886 1.77349 1.16782 1.93630 1.75045 1.81242 1.43930 1.93621 1.79930 1.34336 1.86392 1.77268 0.99393 1.08393 1.29823 1.48499 1.01160 1.07007 1.53321 1.19994 0.95265 0.73751 0.99697 1.21187 1.47231 0.99022 0.90371 0.90078 1.24816 0.94521 0.97485 0.95770 1.69880 1.45783 1.18276 1.18430 0.86883 0.78945 0.81487 0.82623 1.19661 1.20579 1.18901 0.90062 0.90666 0.91143 0.81980 0.75478 0.75865 0.89074 0.88408 0.90527 0.89569 0.89937 0.74817 0.76102 0.93220 0.93681 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.11 36.01 0.36 -1.07 16 2 C 0.09 2.00 6.93 -82.28 -0.57 1.43 16 3 C -0.29 -5.97 9.52 -39.83 -0.38 -6.35 16 4 C 0.29 5.96 8.11 -154.36 -1.25 4.71 16 5 N -0.64 -10.57 5.45 -15.51 -0.08 -10.65 16 6 C 0.72 11.03 8.53 -86.92 -0.74 10.29 16 7 O -0.56 -10.14 13.47 5.29 0.07 -10.07 16 8 N -0.77 -8.17 5.26 -65.23 -0.34 -8.51 16 9 C 0.15 1.21 5.12 -4.04 -0.02 1.19 16 10 C -0.60 -2.45 3.14 -26.73 -0.08 -2.53 16 11 H 0.15 0.18 8.14 -51.92 -0.42 -0.24 16 12 C -0.14 -0.31 9.07 37.16 0.34 0.02 16 13 S 2.61 18.04 5.10 -107.50 -0.55 17.49 16 14 N -1.25 -3.52 8.81 60.35 0.53 -2.99 16 15 O -0.95 -10.48 18.09 -57.54 -1.04 -11.52 16 16 O -0.95 -9.86 16.40 -57.54 -0.94 -10.81 16 17 N -0.32 -7.44 12.59 31.44 0.40 -7.04 16 18 N -0.32 -7.53 3.59 -58.32 -0.21 -7.74 16 19 C 0.23 5.67 5.06 -5.20 -0.03 5.65 16 20 C -0.54 -15.37 9.94 -34.44 -0.34 -15.71 16 21 H 0.08 2.62 8.06 -52.49 -0.42 2.19 16 22 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 23 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 24 Si 0.87 20.41 27.47 -169.99 -4.67 15.74 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.15 7.07 -51.93 -0.37 0.79 16 31 H 0.16 3.29 5.91 -52.49 -0.31 2.98 16 32 H 0.41 5.61 8.84 -40.82 -0.36 5.25 16 33 H 0.40 3.64 6.63 -40.82 -0.27 3.37 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.00 7.68 -51.93 -0.40 -0.40 16 37 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.42 0.95 8.96 -34.47 -0.31 0.64 16 40 H 0.41 -0.14 8.90 -34.47 -0.31 -0.45 16 41 H 0.05 1.13 6.10 -51.93 -0.32 0.81 16 42 H 0.05 1.09 7.57 -51.92 -0.39 0.70 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -40.60 372.96 -8.84 -49.44 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.58 Total: 7.23 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.81 Total: -0.26 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 1.06 Total: -62.85 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.91 Total: -32.40 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 16 Polarization: 18.04 SS G_CDS: -0.55 Total: 17.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -40.60 -8.84 -49.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611533151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.106 kcal (2) G-P(sol) polarization free energy of solvation -40.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds