Wall clock time and date at job start Wed Apr 1 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40396 * 107.86945 * 179.88542 * 3 2 1 5 5 N 1.40196 * 125.97439 * 180.17767 * 4 3 2 6 6 C 1.34772 * 120.00000 * 0.27024 * 5 4 3 7 7 O 1.21595 * 120.00020 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00158 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00026 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47036 * 179.97438 * 9 8 6 11 11 H 1.08992 * 109.47091 * 300.00281 * 10 9 8 12 12 C 1.52998 * 109.47105 * 179.97438 * 10 9 8 13 13 S 1.81400 * 109.46875 * 60.00363 * 10 9 8 14 14 N 1.65603 * 104.45085 * 180.02562 * 13 10 9 15 15 O 1.42112 * 110.54264 * 291.62211 * 13 10 9 16 16 O 1.42099 * 110.54706 * 68.37281 * 13 10 9 17 17 N 1.31217 * 108.05370 * 0.38247 * 4 3 2 18 18 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 19 19 C 1.46496 * 125.97396 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.47079 * 90.00325 * 19 18 2 21 21 H 1.08002 * 120.00024 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00327 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99450 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00465 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46886 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47412 * 119.99720 * 24 22 20 27 27 H 1.48502 * 109.47173 * 239.99978 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 31 31 H 1.08001 * 126.06108 * 0.02728 * 3 2 1 32 32 H 0.97004 * 120.00062 * 180.27001 * 5 4 3 33 33 H 0.97004 * 119.99904 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47274 * 299.99650 * 9 8 6 35 35 H 1.08998 * 109.47280 * 60.00233 * 9 8 6 36 36 H 1.09007 * 109.46994 * 300.00241 * 12 10 9 37 37 H 1.08998 * 109.47186 * 60.00265 * 12 10 9 38 38 H 1.09001 * 109.47344 * 180.02562 * 12 10 9 39 39 H 0.96997 * 119.99579 * 359.97438 * 14 13 10 40 40 H 0.96999 * 120.00182 * 180.02562 * 14 13 10 41 41 H 1.08997 * 109.47352 * 209.99655 * 19 18 2 42 42 H 1.09001 * 109.47699 * 330.00018 * 19 18 2 43 43 H 0.97001 * 120.00075 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6546 0.0027 5 7 4.7738 1.4751 0.0071 6 6 4.6371 2.8159 0.0146 7 8 3.5278 3.3139 0.0171 8 7 5.7298 3.6047 0.0183 9 6 5.5811 5.0621 0.0259 10 6 6.9645 5.7159 0.0294 11 1 7.5124 5.4019 0.9177 12 6 6.8092 7.2379 0.0367 13 16 7.8766 5.2089 -1.4544 14 7 9.3374 5.9780 -1.3244 15 8 8.2020 3.8270 -1.3918 16 8 7.2866 5.7706 -2.6187 17 7 3.6337 -0.6576 -0.0041 18 7 2.3017 -1.0909 -0.0060 19 6 1.8501 -2.4845 -0.0130 20 6 1.6948 -2.9550 -1.4363 21 1 1.9105 -2.2830 -2.2538 22 6 1.2773 -4.2434 -1.6948 23 7 1.0151 -5.0619 -0.6994 24 14 1.0841 -4.8264 -3.4590 25 1 1.4382 -3.7223 -4.3867 26 1 1.9836 -5.9832 -3.6994 27 1 -0.3237 -5.2369 -3.6933 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1211 0.0004 32 1 5.6588 1.0779 0.0047 33 1 6.6148 3.2074 0.0159 34 1 5.0328 5.3761 -0.8623 35 1 5.0334 5.3668 0.9177 36 1 6.2613 7.5515 -0.8519 37 1 6.2610 7.5430 0.9280 38 1 7.7947 7.7037 0.0388 39 1 9.5198 6.5465 -0.5600 40 1 10.0103 5.8606 -2.0131 41 1 2.5849 -3.1072 0.4972 42 1 0.8916 -2.5586 0.5008 43 1 0.7218 -5.9684 -0.8812 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611533152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:50 Heat of formation + Delta-G solvation = -22.783857 kcal Electronic energy + Delta-G solvation = -27804.488367 eV Core-core repulsion = 23628.035597 eV Total energy + Delta-G solvation = -4176.452770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.77853 -39.72202 -37.53241 -36.73671 -36.36298 -34.75093 -34.02737 -33.41878 -32.86783 -31.31379 -30.71940 -27.26639 -26.37682 -26.16185 -23.50639 -22.95862 -21.62629 -20.16273 -19.73686 -19.53170 -18.39368 -18.11024 -17.53622 -16.81223 -16.65144 -16.46989 -15.99499 -15.65312 -15.45029 -14.98458 -14.62915 -14.34820 -14.13895 -13.94006 -13.69459 -13.22927 -13.09163 -12.85533 -12.59977 -12.53272 -12.44778 -12.40935 -12.28679 -12.18730 -12.08740 -11.63828 -11.37463 -11.06908 -11.00216 -10.96304 -10.82742 -10.39860 -10.23727 -10.03618 -9.65968 -9.54478 -9.41042 -8.61590 -7.87977 -7.37910 -6.22273 -4.29594 -0.36270 2.23249 2.30472 2.64511 3.07260 3.08548 3.23320 3.31189 3.36913 3.44476 3.61329 3.74812 3.84495 4.23772 4.27849 4.34950 4.38886 4.75444 4.86686 5.08706 5.11355 5.19788 5.31948 5.44912 5.47740 5.74844 5.93819 6.05254 6.14471 6.21801 6.47400 6.52461 6.55099 6.66304 6.97942 7.05808 7.12256 7.53665 7.71231 7.89628 7.93172 8.11043 8.52161 8.71109 8.80114 9.36792 10.84920 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.002180 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.089542 B =12839.657163 C =13649.438844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.280 3.720 5 N -0.640 5.640 6 C 0.718 3.282 7 O -0.562 6.562 8 N -0.765 5.765 9 C 0.154 3.846 10 C -0.600 4.600 11 H 0.148 0.852 12 C -0.139 4.139 13 S 2.611 3.389 14 N -1.251 6.251 15 O -0.956 6.956 16 O -0.950 6.950 17 N -0.321 5.321 18 N -0.318 5.318 19 C 0.258 3.742 20 C -0.535 4.535 21 H 0.065 0.935 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.410 0.590 33 H 0.406 0.594 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.412 0.588 40 H 0.421 0.579 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.839 26.132 4.699 30.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.027 3.973 5 N -0.290 5.290 6 C 0.417 3.583 7 O -0.437 6.437 8 N -0.427 5.427 9 C 0.028 3.972 10 C -0.710 4.710 11 H 0.166 0.834 12 C -0.198 4.198 13 S 2.701 3.299 14 N -0.925 5.925 15 O -0.944 6.944 16 O -0.939 6.939 17 N -0.152 5.152 18 N -0.100 5.100 19 C 0.141 3.859 20 C -0.573 4.573 21 H 0.083 0.917 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.178 0.822 32 H 0.245 0.755 33 H 0.243 0.757 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.238 0.762 40 H 0.251 0.749 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.981 24.544 4.003 28.529 hybrid contribution 0.896 0.304 -0.188 0.964 sum 14.877 24.847 3.815 29.211 Atomic orbital electron populations 1.20371 0.87937 1.03851 1.02472 1.21057 0.94897 0.87122 1.00964 1.21232 0.89641 0.99850 1.21255 1.18654 0.86447 0.89293 1.02910 1.41350 1.07940 1.03558 1.76150 1.15471 0.84310 0.80572 0.77940 1.90886 1.23265 1.73531 1.56005 1.45386 1.09134 1.06048 1.82109 1.20942 0.92208 0.78094 1.05959 1.30468 1.10476 1.07372 1.22637 0.83362 1.21601 1.04131 0.88037 1.05993 1.05116 0.74152 0.74495 0.76149 1.53150 1.35816 1.67513 1.36023 1.93601 1.82060 1.32389 1.86397 1.93631 1.77224 1.78815 1.44269 1.77263 0.99939 1.08267 1.29681 1.48980 1.00878 1.07761 1.52428 1.19682 0.95950 0.71380 0.98911 1.21385 1.46531 0.97955 0.91441 0.91657 1.24934 0.94721 0.96058 0.98139 1.69932 1.45123 1.06901 1.31078 0.86301 0.77815 0.78793 0.83789 1.19542 1.20683 1.20672 0.91132 0.89933 0.90626 0.82201 0.75540 0.75688 0.89229 0.88343 0.89721 0.89352 0.90747 0.76211 0.74867 0.93014 0.92792 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 2 C 0.09 1.97 6.93 -82.28 -0.57 1.40 16 3 C -0.29 -6.14 9.52 -39.84 -0.38 -6.52 16 4 C 0.28 5.97 8.11 -154.36 -1.25 4.71 16 5 N -0.64 -10.76 5.45 -15.51 -0.08 -10.84 16 6 C 0.72 11.18 8.53 -86.93 -0.74 10.44 16 7 O -0.56 -10.30 13.47 5.28 0.07 -10.23 16 8 N -0.76 -8.26 5.22 -65.22 -0.34 -8.60 16 9 C 0.15 1.21 5.12 -4.04 -0.02 1.19 16 10 C -0.60 -2.42 3.05 -26.73 -0.08 -2.50 16 11 H 0.15 0.18 8.14 -51.93 -0.42 -0.24 16 12 C -0.14 -0.30 9.05 37.16 0.34 0.03 16 13 S 2.61 18.03 5.18 -107.50 -0.56 17.47 16 14 N -1.25 -3.68 9.29 60.35 0.56 -3.12 16 15 O -0.96 -9.85 16.15 -57.54 -0.93 -10.78 16 16 O -0.95 -10.49 17.99 -57.54 -1.03 -11.53 16 17 N -0.32 -7.66 12.59 31.44 0.40 -7.26 16 18 N -0.32 -7.74 3.59 -58.33 -0.21 -7.95 16 19 C 0.26 6.74 5.81 -5.20 -0.03 6.71 16 20 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 21 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 22 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 24 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.16 3.31 5.91 -52.49 -0.31 3.00 16 32 H 0.41 5.74 8.84 -40.82 -0.36 5.38 16 33 H 0.41 3.73 6.49 -40.82 -0.27 3.46 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.26 8.11 -51.92 -0.42 -0.16 16 37 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.07 -0.03 7.22 -51.93 -0.37 -0.40 16 39 H 0.41 -0.14 7.95 -34.47 -0.27 -0.42 16 40 H 0.42 1.04 8.96 -34.47 -0.31 0.73 16 41 H 0.05 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.05 1.39 7.65 -51.93 -0.40 0.99 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -39.36 375.88 -9.17 -48.53 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.62 Total: 6.14 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.80 Total: 0.67 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 1.06 Total: -62.39 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.89 Total: -32.54 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 18.03 SS G_CDS: -0.56 Total: 17.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.36 -9.17 -48.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611533152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.745 kcal (2) G-P(sol) polarization free energy of solvation -39.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds