Wall clock time and date at job start Wed Apr 1 2020 03:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40396 * 107.86945 * 179.88542 * 3 2 1 5 5 N 1.40196 * 125.97439 * 180.17767 * 4 3 2 6 6 C 1.34772 * 120.00000 * 0.27024 * 5 4 3 7 7 O 1.21595 * 120.00020 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00158 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00026 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47036 * 179.97438 * 9 8 6 11 11 H 1.08992 * 109.47091 * 300.00281 * 10 9 8 12 12 C 1.52998 * 109.47105 * 179.97438 * 10 9 8 13 13 S 1.81400 * 109.46875 * 60.00363 * 10 9 8 14 14 N 1.65603 * 104.45085 * 180.02562 * 13 10 9 15 15 O 1.42112 * 110.54264 * 291.62211 * 13 10 9 16 16 O 1.42099 * 110.54706 * 68.37281 * 13 10 9 17 17 N 1.31217 * 108.05370 * 0.38247 * 4 3 2 18 18 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 19 19 C 1.46496 * 125.97396 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.47079 * 90.00325 * 19 18 2 21 21 H 1.08002 * 120.00024 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00327 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99450 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00465 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46886 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47412 * 119.99720 * 24 22 20 27 27 H 1.48502 * 109.47173 * 239.99978 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 31 31 H 1.08001 * 126.06108 * 0.02728 * 3 2 1 32 32 H 0.97004 * 120.00062 * 180.27001 * 5 4 3 33 33 H 0.97004 * 119.99904 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47274 * 299.99650 * 9 8 6 35 35 H 1.08998 * 109.47280 * 60.00233 * 9 8 6 36 36 H 1.09007 * 109.46994 * 300.00241 * 12 10 9 37 37 H 1.08998 * 109.47186 * 60.00265 * 12 10 9 38 38 H 1.09001 * 109.47344 * 180.02562 * 12 10 9 39 39 H 0.96997 * 119.99579 * 359.97438 * 14 13 10 40 40 H 0.96999 * 120.00182 * 180.02562 * 14 13 10 41 41 H 1.08997 * 109.47352 * 209.99655 * 19 18 2 42 42 H 1.09001 * 109.47699 * 330.00018 * 19 18 2 43 43 H 0.97001 * 120.00075 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6546 0.0027 5 7 4.7738 1.4751 0.0071 6 6 4.6371 2.8159 0.0146 7 8 3.5278 3.3139 0.0171 8 7 5.7298 3.6047 0.0183 9 6 5.5811 5.0621 0.0259 10 6 6.9645 5.7159 0.0294 11 1 7.5124 5.4019 0.9177 12 6 6.8092 7.2379 0.0367 13 16 7.8766 5.2089 -1.4544 14 7 9.3374 5.9780 -1.3244 15 8 8.2020 3.8270 -1.3918 16 8 7.2866 5.7706 -2.6187 17 7 3.6337 -0.6576 -0.0041 18 7 2.3017 -1.0909 -0.0060 19 6 1.8501 -2.4845 -0.0130 20 6 1.6948 -2.9550 -1.4363 21 1 1.9105 -2.2830 -2.2538 22 6 1.2773 -4.2434 -1.6948 23 7 1.0151 -5.0619 -0.6994 24 14 1.0841 -4.8264 -3.4590 25 1 1.4382 -3.7223 -4.3867 26 1 1.9836 -5.9832 -3.6994 27 1 -0.3237 -5.2369 -3.6933 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1211 0.0004 32 1 5.6588 1.0779 0.0047 33 1 6.6148 3.2074 0.0159 34 1 5.0328 5.3761 -0.8623 35 1 5.0334 5.3668 0.9177 36 1 6.2613 7.5515 -0.8519 37 1 6.2610 7.5430 0.9280 38 1 7.7947 7.7037 0.0388 39 1 9.5198 6.5465 -0.5600 40 1 10.0103 5.8606 -2.0131 41 1 2.5849 -3.1072 0.4972 42 1 0.8916 -2.5586 0.5008 43 1 0.7218 -5.9684 -0.8812 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611533152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:49 Heat of formation + Delta-G solvation = -56.421011 kcal Electronic energy + Delta-G solvation = -27805.946984 eV Core-core repulsion = 23628.035597 eV Total energy + Delta-G solvation = -4177.911387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.34628 -41.07347 -38.19068 -37.54330 -37.02538 -36.26574 -35.33990 -34.47127 -33.68228 -32.82940 -32.52315 -28.73439 -27.88343 -27.36533 -24.98469 -23.90571 -22.95683 -21.43624 -21.15226 -20.41574 -19.21679 -18.83064 -18.76360 -18.29767 -17.85518 -17.33141 -17.11457 -16.84033 -16.50625 -16.31308 -16.06647 -15.79395 -15.64393 -14.79915 -14.65905 -14.35719 -14.18864 -13.82345 -13.80088 -13.58089 -13.51837 -13.35749 -13.21303 -13.17310 -13.14584 -13.09008 -12.83269 -12.69116 -12.46403 -12.27496 -12.10601 -11.60820 -11.48739 -11.36544 -11.28875 -11.22666 -10.73585 -10.43762 -9.57833 -9.10890 -8.32831 -6.50267 -0.87567 0.97651 1.03666 1.36535 1.38333 1.51127 1.60280 1.86986 2.01229 2.31591 2.35109 2.57930 2.93778 2.96751 3.14525 3.32829 3.79623 3.85213 3.99190 4.15338 4.41538 4.46306 4.55291 4.68393 4.76130 4.78967 4.80729 4.87411 4.94079 4.98832 5.06511 5.17976 5.20118 5.28470 5.33355 5.54202 5.72427 5.81555 5.93845 6.27450 6.36437 6.58031 6.64326 7.06921 7.20684 7.27351 8.73194 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.002180 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.089542 B =12839.657163 C =13649.438844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.088 3.912 3 C -0.297 4.297 4 C 0.288 3.712 5 N -0.637 5.637 6 C 0.715 3.285 7 O -0.590 6.590 8 N -0.748 5.748 9 C 0.138 3.862 10 C -0.568 4.568 11 H 0.188 0.812 12 C -0.147 4.147 13 S 2.606 3.394 14 N -1.233 6.233 15 O -0.998 6.998 16 O -1.001 7.001 17 N -0.359 5.359 18 N -0.343 5.343 19 C 0.275 3.725 20 C -0.553 4.553 21 H 0.047 0.953 22 C 0.023 3.977 23 N -0.917 5.917 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.274 1.274 27 H -0.266 1.266 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.169 0.831 32 H 0.421 0.579 33 H 0.415 0.585 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.429 0.571 40 H 0.425 0.575 41 H 0.025 0.975 42 H 0.054 0.946 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.487 28.181 5.241 32.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 C -0.327 4.327 4 C 0.033 3.967 5 N -0.289 5.289 6 C 0.414 3.586 7 O -0.467 6.467 8 N -0.409 5.409 9 C 0.013 3.987 10 C -0.681 4.681 11 H 0.205 0.795 12 C -0.205 4.205 13 S 2.699 3.301 14 N -0.913 5.913 15 O -0.987 6.987 16 O -0.990 6.990 17 N -0.190 5.190 18 N -0.126 5.126 19 C 0.157 3.843 20 C -0.591 4.591 21 H 0.066 0.934 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.795 3.205 25 H -0.201 1.201 26 H -0.200 1.200 27 H -0.190 1.190 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.186 0.814 32 H 0.258 0.742 33 H 0.254 0.746 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.259 0.741 40 H 0.256 0.744 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.704 26.635 4.537 30.760 hybrid contribution 0.767 -0.160 -0.269 0.828 sum 15.470 26.475 4.268 30.959 Atomic orbital electron populations 1.20504 0.85199 1.04394 1.04184 1.21768 0.96731 0.86340 0.99375 1.21413 0.89703 1.00038 1.21588 1.18958 0.87981 0.88975 1.00740 1.41408 1.07351 1.03900 1.76207 1.15672 0.85063 0.80203 0.77678 1.90850 1.24710 1.73837 1.57305 1.45372 1.08239 1.06988 1.80309 1.21300 0.94819 0.76233 1.06300 1.30264 1.07766 1.08534 1.21565 0.79452 1.21801 1.06305 0.86151 1.06284 1.04865 0.74791 0.73828 0.76573 1.52709 1.34368 1.67289 1.36905 1.93555 1.82862 1.35003 1.87239 1.93579 1.78422 1.79260 1.47751 1.77180 1.00184 1.09706 1.31921 1.48791 1.01601 1.07568 1.54603 1.19252 0.94967 0.72385 0.97728 1.21470 1.47443 0.98373 0.91800 0.93425 1.25720 0.93971 0.95873 1.02231 1.70004 1.45166 1.07383 1.32996 0.85311 0.78532 0.78039 0.78603 1.20054 1.19952 1.19038 0.88732 0.91413 0.87934 0.81358 0.74172 0.74560 0.90269 0.86785 0.90906 0.87625 0.87561 0.74060 0.74353 0.95720 0.92815 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.89 9.89 71.24 0.70 -2.19 16 2 C 0.09 3.84 6.93 41.39 0.29 4.13 16 3 C -0.30 -12.62 9.52 22.10 0.21 -12.41 16 4 C 0.29 12.42 8.11 133.31 1.08 13.50 16 5 N -0.64 -21.36 5.45 -321.23 -1.75 -23.11 16 6 C 0.71 21.79 8.53 179.06 1.53 23.32 16 7 O -0.59 -21.27 13.47 -4.02 -0.05 -21.33 16 8 N -0.75 -15.17 5.22 -478.53 -2.50 -17.67 16 9 C 0.14 1.91 5.12 86.38 0.44 2.35 16 10 C -0.57 -2.91 3.05 30.60 0.09 -2.82 16 11 H 0.19 -0.43 8.14 -2.39 -0.02 -0.45 16 12 C -0.15 -0.13 9.05 71.98 0.65 0.52 16 13 S 2.61 33.14 5.18 -56.49 -0.29 32.85 16 14 N -1.23 -4.69 9.29 37.02 0.34 -4.34 16 15 O -1.00 -20.15 16.15 -127.65 -2.06 -22.21 16 16 O -1.00 -22.27 17.99 -127.65 -2.30 -24.56 16 17 N -0.36 -17.63 12.59 -54.43 -0.69 -18.31 16 18 N -0.34 -17.16 3.59 -338.45 -1.22 -18.38 16 19 C 0.28 14.90 5.81 85.63 0.50 15.40 16 20 C -0.55 -31.74 9.39 25.60 0.24 -31.50 16 21 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 22 C 0.02 1.28 5.46 84.66 0.46 1.75 16 23 N -0.92 -52.47 13.29 21.45 0.28 -52.18 16 24 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 28 H 0.09 2.76 8.14 -2.39 -0.02 2.75 16 29 H 0.07 2.52 7.71 -2.39 -0.02 2.51 16 30 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 31 H 0.17 6.88 5.91 -2.91 -0.02 6.86 16 32 H 0.42 11.79 8.84 -92.71 -0.82 10.97 16 33 H 0.42 7.06 6.49 -92.71 -0.60 6.46 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 0.30 8.11 -2.38 -0.02 0.28 16 37 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.11 -0.55 7.22 -2.39 -0.02 -0.57 16 39 H 0.43 -1.73 7.95 -96.75 -0.77 -2.50 16 40 H 0.43 1.46 8.96 -96.74 -0.87 0.59 16 41 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 2.85 7.65 -2.39 -0.02 2.84 16 43 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -88.04 375.88 -3.96 -92.00 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -1.96 Total: 19.08 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 6.20 Total: 12.04 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -5.52 Total: -134.00 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: -4.41 Total: -68.10 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 33.14 SS G_CDS: -0.29 Total: 32.85 kcal Total: -88.04 -3.96 -92.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611533152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.583 kcal (2) G-P(sol) polarization free energy of solvation -88.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds