Wall clock time and date at job start Wed Apr 1 2020 03:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94102 * 2 1 4 4 C 1.38097 * 120.09880 * 179.97438 * 3 2 1 5 5 C 1.38919 * 119.97663 * 359.74485 * 4 3 2 6 6 N 1.39917 * 120.05754 * 180.28184 * 5 4 3 7 7 C 1.46762 * 124.35043 * 173.34996 * 6 5 4 8 8 C 1.54477 * 105.47507 * 197.01446 * 7 6 5 9 9 H 1.08994 * 110.96990 * 216.46421 * 8 7 6 10 10 C 1.50698 * 110.96903 * 92.73796 * 8 7 6 11 11 O 1.21290 * 120.00324 * 272.76631 * 10 8 7 12 12 N 1.34784 * 120.00114 * 92.76914 * 10 8 7 13 13 C 1.37091 * 120.00137 * 184.20974 * 12 10 8 14 14 H 1.07997 * 120.00150 * 17.02277 * 13 12 10 15 15 C 1.38951 * 119.99851 * 197.03060 * 13 12 10 16 16 N 1.31411 * 119.99958 * 14.32370 * 15 13 12 17 17 Si 1.86803 * 120.00143 * 194.32947 * 15 13 12 18 18 H 1.48503 * 109.47033 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47148 * 119.99442 * 17 15 13 20 20 H 1.48498 * 109.47049 * 239.99678 * 17 15 13 21 21 C 1.46498 * 119.99315 * 4.20942 * 12 10 8 22 22 C 1.47202 * 109.47433 * 83.55724 * 21 12 10 23 23 N 8.79927 * 136.74964 * 349.21502 * 4 1 2 24 24 C 1.54629 * 101.76399 * 334.58563 * 8 7 6 25 25 C 1.34422 * 124.34738 * 353.05113 * 6 5 4 26 26 O 1.21284 * 124.94389 * 359.57040 * 25 6 5 27 27 C 1.38806 * 119.88061 * 0.50834 * 5 4 3 28 28 C 1.38355 * 119.90808 * 359.49572 * 27 5 4 29 29 F 1.35098 * 119.99026 * 180.27621 * 28 27 5 30 30 H 1.08995 * 109.46964 * 270.01588 * 1 2 3 31 31 H 1.08993 * 109.47309 * 30.02199 * 1 2 3 32 32 H 1.09003 * 109.46828 * 150.01882 * 1 2 3 33 33 H 1.08010 * 119.95070 * 0.02562 * 3 2 1 34 34 H 1.07997 * 120.01518 * 180.02562 * 4 3 2 35 35 H 1.08997 * 110.24221 * 316.01747 * 7 6 5 36 36 H 1.09001 * 110.24137 * 77.92785 * 7 6 5 37 37 H 0.97003 * 120.00026 * 180.02562 * 16 15 13 38 38 H 1.09008 * 109.46640 * 203.55589 * 21 12 10 39 39 H 1.08998 * 109.47794 * 323.55160 * 21 12 10 40 40 H 1.09008 * 110.48805 * 143.47675 * 24 8 7 41 41 H 1.09000 * 110.48660 * 266.11557 * 24 8 7 42 42 H 1.08004 * 120.04244 * 179.76416 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5781 1.2019 0.0005 5 6 4.2755 0.0005 0.0064 6 7 5.6747 0.0024 0.0129 7 6 6.5037 -1.1997 0.1598 8 6 7.9092 -0.6866 0.5443 9 1 8.6864 -1.2968 0.0845 10 6 8.0765 -0.6431 2.0413 11 8 7.7340 0.3413 2.6615 12 7 8.6068 -1.6982 2.6911 13 6 8.6797 -1.6941 4.0601 14 1 8.0820 -0.9988 4.6306 15 6 9.5228 -2.5846 4.7135 16 7 10.4486 -3.2285 4.0388 17 14 9.3402 -2.8665 6.5511 18 1 8.2323 -2.0267 7.0730 19 1 9.0385 -4.2982 6.8047 20 1 10.6051 -2.4982 7.2364 21 6 9.1054 -2.8492 1.9343 22 6 10.4792 -2.5798 1.4795 23 7 11.5395 -2.3721 1.1271 24 6 7.8988 0.7393 -0.0538 25 6 6.4322 1.1048 -0.1202 26 8 6.0025 2.2291 -0.2694 27 6 3.5818 -1.2018 0.0011 28 6 2.1983 -1.2000 0.0005 29 9 1.5215 -2.3692 0.0009 30 1 -0.3633 0.0003 1.0276 31 1 -0.3633 0.8897 -0.5141 32 1 -0.3633 -0.8902 -0.5136 33 1 1.6553 2.1325 0.0004 34 1 4.1157 2.1386 0.0010 35 1 6.1062 -1.8379 0.9489 36 1 6.5451 -1.7466 -0.7822 37 1 11.0369 -3.8504 4.4949 38 1 9.1006 -3.7331 2.5723 39 1 8.4638 -3.0215 1.0701 40 1 8.4377 1.4293 0.5956 41 1 8.3331 0.7368 -1.0535 42 1 4.1214 -2.1374 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749603305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:21 Heat of formation + Delta-G solvation = -37.964910 kcal Electronic energy + Delta-G solvation = -30017.515050 eV Core-core repulsion = 25685.040067 eV Total energy + Delta-G solvation = -4332.474983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -48.97660 -41.26985 -39.19938 -38.41156 -36.49225 -35.87238 -34.54911 -33.69623 -32.00447 -30.97963 -30.59113 -27.98153 -27.56512 -26.62060 -25.27974 -23.46481 -22.46139 -21.92165 -19.96593 -19.22515 -18.12915 -17.92904 -17.41532 -16.54332 -16.34526 -16.12929 -15.85922 -15.74623 -15.55871 -14.84396 -14.60069 -14.34305 -14.27909 -13.91276 -13.63576 -13.53137 -13.26560 -13.20896 -13.16080 -13.11012 -12.55993 -12.53189 -12.20370 -11.98679 -11.88122 -11.79871 -11.57044 -11.48207 -11.28776 -11.25985 -11.21507 -10.71027 -10.48569 -10.44848 -10.11971 -9.63692 -9.43038 -8.92390 -8.80399 -8.22654 -7.91820 -6.62587 -4.17165 1.03827 1.12415 2.55216 2.72645 2.97042 3.14542 3.19902 3.29664 3.54991 3.59119 3.81707 3.97080 4.11494 4.29600 4.41487 4.49651 4.67256 4.70284 4.79064 4.81999 5.01262 5.02765 5.09812 5.13370 5.29182 5.41255 5.43034 5.45450 5.50692 5.58232 5.74906 5.76506 5.80964 5.92992 6.00161 6.03130 6.10559 6.34921 6.44947 6.49195 6.93879 6.99493 7.32555 7.70045 8.04806 8.11478 8.57205 8.83230 9.01610 9.52125 10.41380 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.003258 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.991642 B = 8590.898066 C = 9499.243077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.154 4.154 3 C -0.064 4.064 4 C -0.163 4.163 5 C 0.203 3.797 6 N -0.555 5.555 7 C 0.108 3.892 8 C -0.122 4.122 9 H 0.113 0.887 10 C 0.456 3.544 11 O -0.562 6.562 12 N -0.437 5.437 13 C -0.307 4.307 14 H 0.110 0.890 15 C 0.032 3.968 16 N -0.884 5.884 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.281 1.281 21 C 0.215 3.785 22 C 0.244 3.756 23 N -0.471 5.471 24 C -0.132 4.132 25 C 0.536 3.464 26 O -0.511 6.511 27 C -0.193 4.193 28 C 0.124 3.876 29 F -0.137 7.137 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.135 0.865 34 H 0.161 0.839 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.275 0.725 38 H 0.142 0.858 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.849 -0.766 -10.039 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.155 4.155 3 C -0.082 4.082 4 C -0.183 4.183 5 C 0.108 3.892 6 N -0.278 5.278 7 C -0.014 4.014 8 C -0.144 4.144 9 H 0.131 0.869 10 C 0.243 3.757 11 O -0.444 6.444 12 N -0.157 5.157 13 C -0.434 4.434 14 H 0.127 0.873 15 C -0.171 4.171 16 N -0.523 5.523 17 Si 0.758 3.242 18 H -0.191 1.191 19 H -0.203 1.203 20 H -0.207 1.207 21 C 0.088 3.912 22 C -0.074 4.074 23 N -0.151 5.151 24 C -0.172 4.172 25 C 0.326 3.674 26 O -0.387 6.387 27 C -0.215 4.215 28 C 0.104 3.896 29 F -0.116 7.116 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.153 0.847 34 H 0.178 0.822 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.159 0.841 39 H 0.098 0.902 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.518 0.453 -10.239 16.179 hybrid contribution -0.133 -0.854 1.205 1.483 sum -12.651 -0.400 -9.034 15.550 Atomic orbital electron populations 1.20645 0.90306 1.02933 1.02552 1.19858 0.96966 0.91905 1.06816 1.20782 0.93269 0.97006 0.97162 1.21696 0.94404 0.98767 1.03471 1.17441 0.81500 0.93643 0.96637 1.45769 1.03459 1.10078 1.68468 1.22257 0.89366 0.86926 1.02881 1.22334 0.97381 0.97748 0.96933 0.86894 1.19641 0.85043 0.83645 0.87368 1.90605 1.54212 1.31673 1.67880 1.43624 1.52119 1.13380 1.06528 1.19840 1.23825 1.20136 0.79593 0.87268 1.25308 0.94002 0.96876 1.00954 1.69795 1.17299 1.28204 1.37035 0.85751 0.78555 0.78321 0.81530 1.19094 1.20331 1.20725 1.18949 0.82606 0.93931 0.95707 1.29377 0.95384 0.92573 0.90111 1.80960 1.12014 1.08751 1.13344 1.22211 0.93737 0.97492 1.03752 1.20993 0.89372 0.83409 0.73582 1.90583 1.78119 1.21558 1.48404 1.20621 0.92640 0.98121 1.10121 1.17083 0.89095 0.80899 1.02484 1.91475 1.80067 1.46159 1.93862 0.91119 0.91217 0.91502 0.84747 0.82193 0.88727 0.89151 0.91462 0.84081 0.90239 0.86254 0.87069 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.83 36.01 0.35 -0.57 16 2 C -0.15 -1.74 5.89 -104.52 -0.62 -2.36 16 3 C -0.06 -0.73 9.69 -39.62 -0.38 -1.12 16 4 C -0.16 -2.30 9.28 -39.38 -0.37 -2.66 16 5 C 0.20 2.89 6.59 -83.70 -0.55 2.33 16 6 N -0.56 -8.03 3.14 -112.28 -0.35 -8.39 16 7 C 0.11 1.30 5.67 -3.12 -0.02 1.28 16 8 C -0.12 -1.74 2.57 -90.14 -0.23 -1.98 16 9 H 0.11 1.38 6.12 -51.93 -0.32 1.06 16 10 C 0.46 9.16 6.59 -10.98 -0.07 9.09 16 11 O -0.56 -13.69 15.65 5.55 0.09 -13.60 16 12 N -0.44 -9.15 2.61 -117.93 -0.31 -9.46 16 13 C -0.31 -7.36 9.37 -14.94 -0.14 -7.50 16 14 H 0.11 2.82 7.37 -52.49 -0.39 2.43 16 15 C 0.03 0.73 5.06 -17.47 -0.09 0.64 16 16 N -0.88 -20.61 9.11 55.50 0.51 -20.11 16 17 Si 0.93 18.83 29.58 -169.99 -5.03 13.80 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 C 0.22 3.74 4.78 -6.83 -0.03 3.71 16 22 C 0.24 4.84 13.04 -20.74 -0.27 4.57 16 23 N -0.47 -10.24 18.54 42.17 0.78 -9.46 16 24 C -0.13 -1.88 6.08 -26.74 -0.16 -2.04 16 25 C 0.54 8.66 7.84 -10.86 -0.09 8.57 16 26 O -0.51 -9.39 14.83 5.55 0.08 -9.31 16 27 C -0.19 -2.44 9.39 -39.33 -0.37 -2.80 16 28 C 0.12 1.54 7.24 -39.45 -0.29 1.26 16 29 F -0.14 -1.69 16.47 2.25 0.04 -1.65 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.07 0.56 7.63 -51.93 -0.40 0.16 16 33 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.16 2.50 5.29 -52.49 -0.28 2.23 16 35 H 0.09 1.13 7.50 -51.93 -0.39 0.74 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 38 H 0.14 2.60 6.12 -51.92 -0.32 2.28 16 39 H 0.08 0.96 6.65 -51.93 -0.35 0.62 16 40 H 0.12 1.96 7.51 -51.92 -0.39 1.57 16 41 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.14 1.49 7.05 -52.48 -0.37 1.12 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -31.19 360.24 -6.52 -37.71 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.44 Total: 4.61 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -3.32 Total: 10.42 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.63 Total: -47.41 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.17 Total: -22.91 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.19 -6.52 -37.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749603305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.253 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds