Wall clock time and date at job start Wed Apr 1 2020 03:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94102 * 2 1 4 4 C 1.38097 * 120.09880 * 179.97438 * 3 2 1 5 5 C 1.38919 * 119.97663 * 359.74485 * 4 3 2 6 6 N 1.39917 * 120.05754 * 180.28184 * 5 4 3 7 7 C 1.46762 * 124.35043 * 173.34996 * 6 5 4 8 8 C 1.54477 * 105.47507 * 197.01446 * 7 6 5 9 9 H 1.08994 * 110.96990 * 216.46421 * 8 7 6 10 10 C 1.50698 * 110.96903 * 92.73796 * 8 7 6 11 11 O 1.21290 * 120.00324 * 272.76631 * 10 8 7 12 12 N 1.34784 * 120.00114 * 92.76914 * 10 8 7 13 13 C 1.37091 * 120.00137 * 184.20974 * 12 10 8 14 14 H 1.07997 * 120.00150 * 17.02277 * 13 12 10 15 15 C 1.38951 * 119.99851 * 197.03060 * 13 12 10 16 16 N 1.31411 * 119.99958 * 14.32370 * 15 13 12 17 17 Si 1.86803 * 120.00143 * 194.32947 * 15 13 12 18 18 H 1.48503 * 109.47033 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47148 * 119.99442 * 17 15 13 20 20 H 1.48498 * 109.47049 * 239.99678 * 17 15 13 21 21 C 1.46498 * 119.99315 * 4.20942 * 12 10 8 22 22 C 1.47202 * 109.47433 * 83.55724 * 21 12 10 23 23 N 8.79927 * 136.74964 * 349.21502 * 4 1 2 24 24 C 1.54629 * 101.76399 * 334.58563 * 8 7 6 25 25 C 1.34422 * 124.34738 * 353.05113 * 6 5 4 26 26 O 1.21284 * 124.94389 * 359.57040 * 25 6 5 27 27 C 1.38806 * 119.88061 * 0.50834 * 5 4 3 28 28 C 1.38355 * 119.90808 * 359.49572 * 27 5 4 29 29 F 1.35098 * 119.99026 * 180.27621 * 28 27 5 30 30 H 1.08995 * 109.46964 * 270.01588 * 1 2 3 31 31 H 1.08993 * 109.47309 * 30.02199 * 1 2 3 32 32 H 1.09003 * 109.46828 * 150.01882 * 1 2 3 33 33 H 1.08010 * 119.95070 * 0.02562 * 3 2 1 34 34 H 1.07997 * 120.01518 * 180.02562 * 4 3 2 35 35 H 1.08997 * 110.24221 * 316.01747 * 7 6 5 36 36 H 1.09001 * 110.24137 * 77.92785 * 7 6 5 37 37 H 0.97003 * 120.00026 * 180.02562 * 16 15 13 38 38 H 1.09008 * 109.46640 * 203.55589 * 21 12 10 39 39 H 1.08998 * 109.47794 * 323.55160 * 21 12 10 40 40 H 1.09008 * 110.48805 * 143.47675 * 24 8 7 41 41 H 1.09000 * 110.48660 * 266.11557 * 24 8 7 42 42 H 1.08004 * 120.04244 * 179.76416 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5781 1.2019 0.0005 5 6 4.2755 0.0005 0.0064 6 7 5.6747 0.0024 0.0129 7 6 6.5037 -1.1997 0.1598 8 6 7.9092 -0.6866 0.5443 9 1 8.6864 -1.2968 0.0845 10 6 8.0765 -0.6431 2.0413 11 8 7.7340 0.3413 2.6615 12 7 8.6068 -1.6982 2.6911 13 6 8.6797 -1.6941 4.0601 14 1 8.0820 -0.9988 4.6306 15 6 9.5228 -2.5846 4.7135 16 7 10.4486 -3.2285 4.0388 17 14 9.3402 -2.8665 6.5511 18 1 8.2323 -2.0267 7.0730 19 1 9.0385 -4.2982 6.8047 20 1 10.6051 -2.4982 7.2364 21 6 9.1054 -2.8492 1.9343 22 6 10.4792 -2.5798 1.4795 23 7 11.5395 -2.3721 1.1271 24 6 7.8988 0.7393 -0.0538 25 6 6.4322 1.1048 -0.1202 26 8 6.0025 2.2291 -0.2694 27 6 3.5818 -1.2018 0.0011 28 6 2.1983 -1.2000 0.0005 29 9 1.5215 -2.3692 0.0009 30 1 -0.3633 0.0003 1.0276 31 1 -0.3633 0.8897 -0.5141 32 1 -0.3633 -0.8902 -0.5136 33 1 1.6553 2.1325 0.0004 34 1 4.1157 2.1386 0.0010 35 1 6.1062 -1.8379 0.9489 36 1 6.5451 -1.7466 -0.7822 37 1 11.0369 -3.8504 4.4949 38 1 9.1006 -3.7331 2.5723 39 1 8.4638 -3.0215 1.0701 40 1 8.4377 1.4293 0.5956 41 1 8.3331 0.7368 -1.0535 42 1 4.1214 -2.1374 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749603305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:20 Heat of formation + Delta-G solvation = -55.696819 kcal Electronic energy + Delta-G solvation = -30018.283964 eV Core-core repulsion = 25685.040067 eV Total energy + Delta-G solvation = -4333.243896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.92014 -42.41860 -40.57705 -39.54575 -37.82818 -37.38708 -36.19109 -34.77802 -33.68979 -31.99060 -31.55208 -29.34462 -28.87570 -27.58274 -26.76588 -24.64770 -23.49231 -22.99616 -21.03247 -20.64640 -19.76276 -19.05005 -18.78833 -17.87924 -17.51722 -17.16107 -17.09942 -16.78175 -16.65092 -16.26007 -15.95362 -15.72248 -15.59350 -14.97991 -14.75800 -14.74833 -14.65420 -14.43602 -14.21737 -14.10324 -13.79259 -13.72261 -13.36793 -13.31839 -13.19595 -12.99985 -12.95005 -12.79793 -12.61976 -12.51569 -12.34348 -12.16088 -12.11384 -12.07604 -11.15378 -11.11231 -10.82894 -10.41340 -9.94554 -9.88218 -8.91920 -8.39106 -5.99186 0.05141 0.15868 1.33852 1.42472 1.48033 1.58005 1.68879 1.76458 2.01018 2.27935 2.34135 2.61198 2.97028 2.99527 3.09050 3.29929 3.37107 3.62660 3.68236 3.76744 3.86351 3.88505 4.09012 4.19445 4.28951 4.45830 4.49915 4.52645 4.65599 4.68892 4.72319 4.78707 4.81204 4.91955 5.05077 5.05818 5.07006 5.23177 5.41663 5.46919 5.47734 5.91290 5.96979 6.00855 6.38632 6.88636 7.02519 7.11043 7.33089 7.87936 8.61679 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.003258 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.991642 B = 8590.898066 C = 9499.243077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.150 4.150 3 C -0.062 4.062 4 C -0.183 4.183 5 C 0.179 3.821 6 N -0.556 5.556 7 C 0.107 3.893 8 C -0.111 4.111 9 H 0.146 0.854 10 C 0.452 3.548 11 O -0.614 6.614 12 N -0.448 5.448 13 C -0.332 4.332 14 H 0.078 0.922 15 C 0.009 3.991 16 N -0.893 5.893 17 Si 0.982 3.018 18 H -0.277 1.277 19 H -0.262 1.262 20 H -0.290 1.290 21 C 0.215 3.785 22 C 0.257 3.743 23 N -0.508 5.508 24 C -0.129 4.129 25 C 0.524 3.476 26 O -0.547 6.547 27 C -0.189 4.189 28 C 0.113 3.887 29 F -0.136 7.136 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.145 0.855 37 H 0.275 0.725 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.091 0.909 41 H 0.153 0.847 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.164 -2.742 -11.581 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.080 4.080 4 C -0.204 4.204 5 C 0.085 3.915 6 N -0.278 5.278 7 C -0.014 4.014 8 C -0.133 4.133 9 H 0.163 0.837 10 C 0.242 3.758 11 O -0.500 6.500 12 N -0.167 5.167 13 C -0.459 4.459 14 H 0.096 0.904 15 C -0.193 4.193 16 N -0.532 5.532 17 Si 0.807 3.193 18 H -0.202 1.202 19 H -0.186 1.186 20 H -0.216 1.216 21 C 0.089 3.911 22 C -0.061 4.061 23 N -0.188 5.188 24 C -0.169 4.169 25 C 0.315 3.685 26 O -0.426 6.426 27 C -0.210 4.210 28 C 0.093 3.907 29 F -0.115 7.115 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.176 0.824 34 H 0.156 0.844 35 H 0.115 0.885 36 H 0.163 0.837 37 H 0.086 0.914 38 H 0.152 0.848 39 H 0.161 0.839 40 H 0.109 0.891 41 H 0.171 0.829 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.836 -1.582 -11.798 18.252 hybrid contribution 0.202 -0.185 1.719 1.741 sum -13.634 -1.768 -10.079 17.047 Atomic orbital electron populations 1.20732 0.88173 1.04129 1.03385 1.20203 0.98552 0.91333 1.05065 1.21024 0.92382 0.98337 0.96268 1.21700 0.95612 0.98228 1.04843 1.17611 0.81557 0.94243 0.98117 1.45846 1.03787 1.10362 1.67835 1.22571 0.86977 0.86179 1.05692 1.22294 1.00159 0.98611 0.92230 0.83661 1.20654 0.82975 0.82400 0.89815 1.90580 1.55862 1.33663 1.69846 1.43760 1.52286 1.14819 1.05874 1.19632 1.24393 1.20399 0.81513 0.90406 1.25761 0.93556 0.96420 1.03563 1.69871 1.17301 1.28255 1.37800 0.85024 0.77457 0.78700 0.78079 1.20161 1.18609 1.21630 1.19309 0.82297 0.92030 0.97477 1.29852 0.95637 0.91502 0.89095 1.80974 1.13125 1.09881 1.14841 1.22255 0.92534 0.96701 1.05381 1.21370 0.90347 0.83430 0.73363 1.90561 1.78794 1.22969 1.50246 1.20777 0.92856 0.98246 1.09146 1.17267 0.89309 0.81292 1.02842 1.91477 1.80002 1.46121 1.93888 0.90338 0.89294 0.91115 0.82382 0.84370 0.88451 0.83725 0.91446 0.84802 0.83864 0.89096 0.82911 0.82251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.83 71.24 0.70 -0.86 16 2 C -0.15 -3.11 5.89 -19.80 -0.12 -3.22 16 3 C -0.06 -1.36 9.69 22.24 0.22 -1.14 16 4 C -0.18 -5.20 9.28 22.40 0.21 -4.99 16 5 C 0.18 4.93 6.59 38.15 0.25 5.18 16 6 N -0.56 -15.33 3.14 -627.72 -1.97 -17.30 16 7 C 0.11 2.19 5.67 86.83 0.49 2.68 16 8 C -0.11 -2.90 2.57 -10.48 -0.03 -2.93 16 9 H 0.15 2.87 6.12 -2.39 -0.01 2.86 16 10 C 0.45 17.99 6.59 87.66 0.58 18.57 16 11 O -0.61 -30.98 15.65 -3.06 -0.05 -31.03 16 12 N -0.45 -18.46 2.61 -645.41 -1.68 -20.14 16 13 C -0.33 -16.15 9.37 84.04 0.79 -15.37 16 14 H 0.08 4.21 7.37 -2.91 -0.02 4.19 16 15 C 0.01 0.41 5.06 84.93 0.43 0.84 16 16 N -0.89 -41.00 9.11 21.66 0.20 -40.80 16 17 Si 0.98 38.71 29.58 68.60 2.03 40.74 16 18 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 20 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.21 6.93 4.78 84.57 0.40 7.33 16 22 C 0.26 9.68 13.04 89.44 1.17 10.84 16 23 N -0.51 -21.38 18.54 20.01 0.37 -21.01 16 24 C -0.13 -3.52 6.08 30.59 0.19 -3.34 16 25 C 0.52 16.86 7.84 87.90 0.69 17.55 16 26 O -0.55 -20.88 14.83 -3.04 -0.05 -20.93 16 27 C -0.19 -4.37 9.39 22.43 0.21 -4.15 16 28 C 0.11 2.57 7.24 22.36 0.16 2.73 16 29 F -0.14 -3.05 16.47 44.97 0.74 -2.31 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 32 H 0.07 0.99 7.63 -2.39 -0.02 0.97 16 33 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.14 4.55 5.29 -2.91 -0.02 4.54 16 35 H 0.10 1.99 7.50 -2.39 -0.02 1.97 16 36 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.28 12.27 8.31 -92.71 -0.77 11.50 16 38 H 0.13 4.64 6.12 -2.38 -0.01 4.62 16 39 H 0.14 2.76 6.65 -2.39 -0.02 2.74 16 40 H 0.09 3.06 7.51 -2.38 -0.02 3.04 16 41 H 0.15 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.16 2.88 7.05 -2.91 -0.02 2.86 16 Total: -1.00 -72.46 360.24 7.02 -65.44 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 1.09 Total: 17.62 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 6.34 Total: 29.72 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -3.08 Total: -99.26 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.09 Total: -51.96 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.74 Total: -2.31 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -72.46 7.02 -65.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749603305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.739 kcal (2) G-P(sol) polarization free energy of solvation -72.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds