Wall clock time and date at job start Wed Apr 1 2020 03:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38263 * 119.94091 * 2 1 4 4 C 1.38102 * 120.09185 * 179.76734 * 3 2 1 5 5 C 1.38913 * 119.98260 * 0.45445 * 4 3 2 6 6 N 1.39915 * 120.05567 * 179.79504 * 5 4 3 7 7 C 1.46772 * 124.34661 * 185.54094 * 6 5 4 8 8 C 1.54482 * 105.47435 * 162.97930 * 7 6 5 9 9 H 1.08997 * 110.96641 * 143.52959 * 8 7 6 10 10 C 1.50693 * 111.00585 * 267.28583 * 8 7 6 11 11 O 1.21300 * 119.99842 * 358.69150 * 10 8 7 12 12 N 1.34778 * 120.00303 * 178.69541 * 10 8 7 13 13 C 1.37093 * 120.00015 * 183.39050 * 12 10 8 14 14 H 1.07998 * 120.00541 * 32.72538 * 13 12 10 15 15 C 1.38953 * 119.99691 * 212.73127 * 13 12 10 16 16 N 1.31405 * 120.00328 * 5.93831 * 15 13 12 17 17 Si 1.86807 * 119.99866 * 185.94326 * 15 13 12 18 18 H 1.48494 * 109.47269 * 89.99496 * 17 15 13 19 19 H 1.48494 * 109.46874 * 210.00019 * 17 15 13 20 20 H 1.48501 * 109.46814 * 329.99530 * 17 15 13 21 21 C 1.46496 * 119.99435 * 3.38962 * 12 10 8 22 22 C 1.47199 * 109.47250 * 82.91641 * 21 12 10 23 23 N 8.76689 * 139.58570 * 9.69698 * 4 1 2 24 24 C 1.54636 * 101.76307 * 25.41771 * 8 7 6 25 25 C 1.34414 * 124.35614 * 5.53735 * 6 5 4 26 26 O 1.21294 * 124.94069 * 0.44236 * 25 6 5 27 27 C 1.38805 * 119.88212 * 359.52070 * 5 4 3 28 28 C 1.38357 * 119.90768 * 0.25534 * 27 5 4 29 29 F 1.35098 * 119.99197 * 179.97438 * 28 27 5 30 30 H 1.08999 * 109.47427 * 270.02340 * 1 2 3 31 31 H 1.08998 * 109.46928 * 30.02866 * 1 2 3 32 32 H 1.09004 * 109.46718 * 150.02846 * 1 2 3 33 33 H 1.07996 * 119.95616 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.00641 * 180.22879 * 4 3 2 35 35 H 1.09001 * 110.24414 * 43.97965 * 7 6 5 36 36 H 1.08999 * 110.24064 * 281.98342 * 7 6 5 37 37 H 0.96997 * 120.00338 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.46546 * 202.91501 * 21 12 10 39 39 H 1.08990 * 109.47549 * 322.91477 * 21 12 10 40 40 H 1.08998 * 110.48525 * 93.87176 * 24 8 7 41 41 H 1.08994 * 110.48795 * 216.52305 * 24 8 7 42 42 H 1.07997 * 120.05168 * 180.26648 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5781 1.2018 0.0049 5 6 4.2755 0.0004 0.0002 6 7 5.6747 0.0023 0.0008 7 6 6.5045 -1.2022 -0.1209 8 6 7.9119 -0.6959 -0.5073 9 1 8.6868 -1.2979 -0.0329 10 6 8.0873 -0.6777 -2.0038 11 8 7.1883 -1.0568 -2.7245 12 7 9.2432 -0.2404 -2.5416 13 6 9.3778 -0.1582 -3.9035 14 1 8.5220 0.0811 -4.5173 15 6 10.6153 -0.3830 -4.4940 16 7 11.6289 -0.7878 -3.7622 17 14 10.8383 -0.1094 -6.3285 18 1 11.2546 1.2949 -6.5725 19 1 11.8820 -1.0318 -6.8432 20 1 9.5553 -0.3740 -7.0279 21 6 10.3557 0.1472 -1.6708 22 6 11.1084 -1.0534 -1.2726 23 7 11.6894 -1.9801 -0.9653 24 6 7.8985 0.7403 0.0658 25 6 6.4316 1.1074 0.1127 26 8 6.0013 2.2349 0.2343 27 6 3.5819 -1.2019 0.0007 28 6 2.1983 -1.2001 0.0006 29 9 1.5214 -2.3693 0.0006 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5134 33 1 1.6555 2.1324 -0.0004 34 1 4.1158 2.1384 0.0086 35 1 6.1109 -1.8542 -0.9007 36 1 6.5422 -1.7318 0.8311 37 1 12.4928 -0.9443 -4.1744 38 1 11.0161 0.8290 -2.2068 39 1 9.9657 0.6429 -0.7819 40 1 8.3277 0.7553 1.0676 41 1 8.4407 1.4189 -0.5927 42 1 4.1213 -2.1375 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749603306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:25 Heat of formation + Delta-G solvation = -39.230021 kcal Electronic energy + Delta-G solvation = -30010.017518 eV Core-core repulsion = 25677.487676 eV Total energy + Delta-G solvation = -4332.529842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.95567 -41.31765 -39.21225 -38.39788 -36.52967 -35.77675 -34.40570 -33.84872 -32.03001 -30.94974 -30.57303 -27.78837 -27.59706 -26.64065 -25.32069 -23.46724 -22.44007 -21.91419 -20.03149 -19.24382 -17.99388 -17.97107 -17.38156 -16.69775 -16.31426 -16.04469 -15.83232 -15.74527 -15.59819 -14.86657 -14.56715 -14.40731 -14.06071 -13.95887 -13.67675 -13.53682 -13.40708 -13.20023 -13.17201 -13.09809 -12.54536 -12.43601 -12.13753 -11.94920 -11.92082 -11.78778 -11.52274 -11.47528 -11.23633 -11.22208 -11.20073 -10.67069 -10.58967 -10.45032 -10.04775 -9.67927 -9.29623 -8.89995 -8.82250 -8.08646 -7.90831 -6.58512 -4.26052 1.03992 1.14265 2.49497 2.71921 3.02977 3.15912 3.19413 3.36424 3.60153 3.62483 3.87564 4.01430 4.12621 4.24846 4.33796 4.51935 4.68793 4.71479 4.78755 4.86674 5.03056 5.05805 5.12144 5.13854 5.32638 5.40145 5.44233 5.50121 5.52743 5.62553 5.73807 5.79585 5.84285 5.86743 5.96373 6.03866 6.10762 6.35327 6.35878 6.45424 6.94594 6.99380 7.34120 7.82338 7.98295 8.13258 8.67991 8.84787 9.01907 9.54303 10.47316 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.002951 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.609651 B = 9485.003365 C = 9935.094043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.154 4.154 3 C -0.064 4.064 4 C -0.165 4.165 5 C 0.204 3.796 6 N -0.550 5.550 7 C 0.110 3.890 8 C -0.122 4.122 9 H 0.118 0.882 10 C 0.466 3.534 11 O -0.558 6.558 12 N -0.437 5.437 13 C -0.313 4.313 14 H 0.102 0.898 15 C 0.039 3.961 16 N -0.881 5.881 17 Si 0.932 3.068 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.268 1.268 21 C 0.215 3.785 22 C 0.246 3.754 23 N -0.471 5.471 24 C -0.150 4.150 25 C 0.526 3.474 26 O -0.511 6.511 27 C -0.189 4.189 28 C 0.124 3.876 29 F -0.137 7.137 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.135 0.865 34 H 0.161 0.839 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.275 0.725 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 4.233 10.255 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.155 4.155 3 C -0.083 4.083 4 C -0.185 4.185 5 C 0.108 3.892 6 N -0.272 5.272 7 C -0.012 4.012 8 C -0.145 4.145 9 H 0.136 0.864 10 C 0.253 3.747 11 O -0.439 6.439 12 N -0.158 5.158 13 C -0.440 4.440 14 H 0.120 0.880 15 C -0.166 4.166 16 N -0.519 5.519 17 Si 0.758 3.242 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.192 1.192 21 C 0.088 3.912 22 C -0.072 4.072 23 N -0.151 5.151 24 C -0.190 4.190 25 C 0.316 3.684 26 O -0.387 6.387 27 C -0.211 4.211 28 C 0.104 3.896 29 F -0.116 7.116 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.153 0.847 34 H 0.179 0.821 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.142 0.858 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.656 3.189 10.337 15.903 hybrid contribution 0.283 -0.082 -1.176 1.212 sum -11.373 3.107 9.161 14.930 Atomic orbital electron populations 1.20644 0.90316 1.03073 1.02383 1.19857 0.96954 0.91900 1.06828 1.20770 0.93277 0.96970 0.97272 1.21699 0.94428 0.98681 1.03706 1.17420 0.81482 0.93618 0.96641 1.45771 1.03575 1.09897 1.67963 1.22235 0.89147 0.86930 1.02925 1.22361 0.98026 0.96959 0.97121 0.86420 1.19795 0.85122 0.81766 0.88013 1.90588 1.41704 1.49814 1.61780 1.43401 1.09606 1.56476 1.06279 1.19615 0.96866 1.47109 0.80406 0.88049 1.25451 0.95640 0.94934 1.00560 1.69578 1.02416 1.43417 1.36512 0.85820 0.78454 0.78176 0.81722 1.20058 1.20892 1.19248 1.18862 0.88964 0.89184 0.94209 1.29132 0.93258 0.94864 0.89955 1.80906 1.09785 1.10662 1.13748 1.22566 0.94053 0.97447 1.04889 1.21021 0.89399 0.83636 0.74346 1.90601 1.78036 1.21401 1.48646 1.20639 0.92619 0.98261 1.09588 1.17097 0.89097 0.80910 1.02507 1.91473 1.80055 1.46199 1.93865 0.91240 0.91164 0.91470 0.84747 0.82149 0.87492 0.89680 0.91393 0.85843 0.89737 0.86285 0.86111 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.83 36.01 0.35 -0.59 16 2 C -0.15 -1.79 5.89 -104.52 -0.62 -2.40 16 3 C -0.06 -0.75 9.69 -39.62 -0.38 -1.13 16 4 C -0.16 -2.30 9.28 -39.38 -0.37 -2.67 16 5 C 0.20 2.96 6.60 -83.71 -0.55 2.41 16 6 N -0.55 -8.01 3.14 -112.27 -0.35 -8.37 16 7 C 0.11 1.46 5.61 -3.12 -0.02 1.44 16 8 C -0.12 -1.75 2.64 -90.14 -0.24 -1.99 16 9 H 0.12 1.49 7.44 -51.93 -0.39 1.11 16 10 C 0.47 9.40 6.87 -10.99 -0.08 9.33 16 11 O -0.56 -13.41 15.36 5.54 0.09 -13.33 16 12 N -0.44 -9.25 2.55 -117.94 -0.30 -9.55 16 13 C -0.31 -7.56 9.04 -14.93 -0.14 -7.70 16 14 H 0.10 2.60 7.63 -52.49 -0.40 2.19 16 15 C 0.04 0.91 5.15 -17.47 -0.09 0.82 16 16 N -0.88 -21.26 9.34 55.50 0.52 -20.74 16 17 Si 0.93 19.24 29.56 -169.99 -5.02 14.21 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 C 0.21 3.77 4.65 -6.83 -0.03 3.74 16 22 C 0.25 4.92 12.51 -20.76 -0.26 4.66 16 23 N -0.47 -10.32 18.54 42.16 0.78 -9.54 16 24 C -0.15 -1.82 5.17 -26.74 -0.14 -1.96 16 25 C 0.53 7.87 7.92 -10.86 -0.09 7.79 16 26 O -0.51 -8.66 14.82 5.55 0.08 -8.58 16 27 C -0.19 -2.56 9.38 -39.33 -0.37 -2.92 16 28 C 0.12 1.61 7.24 -39.44 -0.29 1.33 16 29 F -0.14 -1.79 16.47 2.25 0.04 -1.75 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.07 0.60 7.63 -51.93 -0.40 0.20 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.16 2.42 5.25 -52.48 -0.28 2.14 16 35 H 0.11 1.62 6.56 -51.93 -0.34 1.28 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 38 H 0.12 2.25 7.02 -51.93 -0.36 1.88 16 39 H 0.09 1.08 4.65 -51.93 -0.24 0.84 16 40 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.12 1.49 6.23 -51.93 -0.32 1.17 16 42 H 0.14 1.70 7.01 -52.49 -0.37 1.33 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -31.25 356.87 -6.43 -37.68 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.34 Total: 4.43 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -3.29 Total: 10.15 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.65 Total: -48.20 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.17 Total: -21.90 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.25 -6.43 -37.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749603306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.548 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds