Wall clock time and date at job start Wed Apr 1 2020 03:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38263 * 119.94091 * 2 1 4 4 C 1.38102 * 120.09185 * 179.76734 * 3 2 1 5 5 C 1.38913 * 119.98260 * 0.45445 * 4 3 2 6 6 N 1.39915 * 120.05567 * 179.79504 * 5 4 3 7 7 C 1.46772 * 124.34661 * 185.54094 * 6 5 4 8 8 C 1.54482 * 105.47435 * 162.97930 * 7 6 5 9 9 H 1.08997 * 110.96641 * 143.52959 * 8 7 6 10 10 C 1.50693 * 111.00585 * 267.28583 * 8 7 6 11 11 O 1.21300 * 119.99842 * 358.69150 * 10 8 7 12 12 N 1.34778 * 120.00303 * 178.69541 * 10 8 7 13 13 C 1.37093 * 120.00015 * 183.39050 * 12 10 8 14 14 H 1.07998 * 120.00541 * 32.72538 * 13 12 10 15 15 C 1.38953 * 119.99691 * 212.73127 * 13 12 10 16 16 N 1.31405 * 120.00328 * 5.93831 * 15 13 12 17 17 Si 1.86807 * 119.99866 * 185.94326 * 15 13 12 18 18 H 1.48494 * 109.47269 * 89.99496 * 17 15 13 19 19 H 1.48494 * 109.46874 * 210.00019 * 17 15 13 20 20 H 1.48501 * 109.46814 * 329.99530 * 17 15 13 21 21 C 1.46496 * 119.99435 * 3.38962 * 12 10 8 22 22 C 1.47199 * 109.47250 * 82.91641 * 21 12 10 23 23 N 8.76689 * 139.58570 * 9.69698 * 4 1 2 24 24 C 1.54636 * 101.76307 * 25.41771 * 8 7 6 25 25 C 1.34414 * 124.35614 * 5.53735 * 6 5 4 26 26 O 1.21294 * 124.94069 * 0.44236 * 25 6 5 27 27 C 1.38805 * 119.88212 * 359.52070 * 5 4 3 28 28 C 1.38357 * 119.90768 * 0.25534 * 27 5 4 29 29 F 1.35098 * 119.99197 * 179.97438 * 28 27 5 30 30 H 1.08999 * 109.47427 * 270.02340 * 1 2 3 31 31 H 1.08998 * 109.46928 * 30.02866 * 1 2 3 32 32 H 1.09004 * 109.46718 * 150.02846 * 1 2 3 33 33 H 1.07996 * 119.95616 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.00641 * 180.22879 * 4 3 2 35 35 H 1.09001 * 110.24414 * 43.97965 * 7 6 5 36 36 H 1.08999 * 110.24064 * 281.98342 * 7 6 5 37 37 H 0.96997 * 120.00338 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.46546 * 202.91501 * 21 12 10 39 39 H 1.08990 * 109.47549 * 322.91477 * 21 12 10 40 40 H 1.08998 * 110.48525 * 93.87176 * 24 8 7 41 41 H 1.08994 * 110.48795 * 216.52305 * 24 8 7 42 42 H 1.07997 * 120.05168 * 180.26648 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5781 1.2018 0.0049 5 6 4.2755 0.0004 0.0002 6 7 5.6747 0.0023 0.0008 7 6 6.5045 -1.2022 -0.1209 8 6 7.9119 -0.6959 -0.5073 9 1 8.6868 -1.2979 -0.0329 10 6 8.0873 -0.6777 -2.0038 11 8 7.1883 -1.0568 -2.7245 12 7 9.2432 -0.2404 -2.5416 13 6 9.3778 -0.1582 -3.9035 14 1 8.5220 0.0811 -4.5173 15 6 10.6153 -0.3830 -4.4940 16 7 11.6289 -0.7878 -3.7622 17 14 10.8383 -0.1094 -6.3285 18 1 11.2546 1.2949 -6.5725 19 1 11.8820 -1.0318 -6.8432 20 1 9.5553 -0.3740 -7.0279 21 6 10.3557 0.1472 -1.6708 22 6 11.1084 -1.0534 -1.2726 23 7 11.6894 -1.9801 -0.9653 24 6 7.8985 0.7403 0.0658 25 6 6.4316 1.1074 0.1127 26 8 6.0013 2.2349 0.2343 27 6 3.5819 -1.2019 0.0007 28 6 2.1983 -1.2001 0.0006 29 9 1.5214 -2.3693 0.0006 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5134 33 1 1.6555 2.1324 -0.0004 34 1 4.1158 2.1384 0.0086 35 1 6.1109 -1.8542 -0.9007 36 1 6.5422 -1.7318 0.8311 37 1 12.4928 -0.9443 -4.1744 38 1 11.0161 0.8290 -2.2068 39 1 9.9657 0.6429 -0.7819 40 1 8.3277 0.7553 1.0676 41 1 8.4407 1.4189 -0.5927 42 1 4.1213 -2.1375 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749603306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:24 Heat of formation + Delta-G solvation = -56.866513 kcal Electronic energy + Delta-G solvation = -30010.782294 eV Core-core repulsion = 25677.487676 eV Total energy + Delta-G solvation = -4333.294618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.96712 -42.45406 -40.58755 -39.53491 -37.84283 -37.30338 -36.08428 -34.94181 -33.67368 -32.01222 -31.56746 -29.16286 -28.86367 -27.68317 -26.80948 -24.66341 -23.50433 -23.00446 -21.10140 -20.66408 -19.66872 -19.06806 -18.76444 -18.03196 -17.46316 -17.15405 -17.13179 -16.78189 -16.71516 -16.32490 -15.96192 -15.71660 -15.48983 -15.06352 -14.84429 -14.67031 -14.63056 -14.49857 -14.22727 -14.12420 -13.81323 -13.63407 -13.37692 -13.25908 -13.14515 -13.01277 -12.89562 -12.80387 -12.61981 -12.57165 -12.38078 -12.21040 -12.17259 -12.04185 -11.06325 -11.04426 -10.80697 -10.45947 -9.90855 -9.83147 -8.92994 -8.39731 -6.11614 0.03452 0.13384 1.38121 1.41420 1.45798 1.54131 1.69024 1.80025 2.05662 2.29892 2.37599 2.59668 2.94356 3.03916 3.09075 3.22558 3.33708 3.58928 3.72862 3.73661 3.85464 3.86313 4.07658 4.17469 4.36624 4.39546 4.47284 4.58714 4.63277 4.66558 4.73966 4.79435 4.80667 4.89879 4.92536 5.02791 5.05075 5.21337 5.39456 5.43749 5.45920 5.93333 5.94994 6.08728 6.37667 6.87859 7.09956 7.11710 7.30159 7.86799 8.62905 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.002951 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.609651 B = 9485.003365 C = 9935.094043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.150 4.150 3 C -0.060 4.060 4 C -0.179 4.179 5 C 0.180 3.820 6 N -0.554 5.554 7 C 0.110 3.890 8 C -0.113 4.113 9 H 0.144 0.856 10 C 0.460 3.540 11 O -0.605 6.605 12 N -0.451 5.451 13 C -0.333 4.333 14 H 0.076 0.924 15 C 0.011 3.989 16 N -0.894 5.894 17 Si 0.982 3.018 18 H -0.260 1.260 19 H -0.287 1.287 20 H -0.280 1.280 21 C 0.217 3.783 22 C 0.260 3.740 23 N -0.506 5.506 24 C -0.140 4.140 25 C 0.515 3.485 26 O -0.539 6.539 27 C -0.196 4.196 28 C 0.109 3.891 29 F -0.139 7.139 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.164 0.836 34 H 0.148 0.852 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.273 0.727 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.170 0.830 41 H 0.122 0.878 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.497 4.961 11.863 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.151 4.151 3 C -0.078 4.078 4 C -0.200 4.200 5 C 0.085 3.915 6 N -0.276 5.276 7 C -0.011 4.011 8 C -0.135 4.135 9 H 0.162 0.838 10 C 0.250 3.750 11 O -0.489 6.489 12 N -0.171 5.171 13 C -0.461 4.461 14 H 0.093 0.907 15 C -0.192 4.192 16 N -0.532 5.532 17 Si 0.808 3.192 18 H -0.185 1.185 19 H -0.212 1.212 20 H -0.206 1.206 21 C 0.091 3.909 22 C -0.058 4.058 23 N -0.187 5.187 24 C -0.179 4.179 25 C 0.306 3.694 26 O -0.417 6.417 27 C -0.217 4.217 28 C 0.090 3.910 29 F -0.118 7.118 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.182 0.818 34 H 0.166 0.834 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.187 0.813 41 H 0.140 0.860 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.081 3.916 11.963 17.447 hybrid contribution 0.287 -0.335 -1.703 1.759 sum -11.794 3.581 10.260 16.037 Atomic orbital electron populations 1.20734 0.88060 1.03949 1.03613 1.20221 0.98608 0.91226 1.05086 1.21080 0.92476 0.98267 0.95972 1.21753 0.95549 0.98052 1.04608 1.17637 0.81815 0.94152 0.97902 1.45895 1.03759 1.10216 1.67730 1.22341 0.88121 0.86450 1.04223 1.22295 0.99450 0.99205 0.92500 0.83805 1.20801 0.83821 0.79850 0.90571 1.90561 1.43155 1.51393 1.63840 1.43566 1.10842 1.56933 1.05790 1.19482 0.96310 1.48027 0.82240 0.90662 1.25939 0.95265 0.94663 1.03315 1.69662 1.02343 1.43953 1.37263 0.85070 0.77383 0.78637 0.78157 1.18499 1.21239 1.20551 1.19172 0.87881 0.88226 0.95603 1.29552 0.92553 0.94760 0.88923 1.80917 1.10927 1.11702 1.15126 1.22683 0.92438 0.95337 1.07486 1.21526 0.90582 0.83343 0.73913 1.90588 1.78686 1.22337 1.50095 1.20744 0.93064 0.98282 1.09621 1.17315 0.89174 0.81441 1.03115 1.91464 1.80004 1.46384 1.93941 0.89716 0.89258 0.91661 0.81845 0.83430 0.89876 0.85505 0.91697 0.86324 0.84257 0.81255 0.86003 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.83 71.24 0.70 -0.93 16 2 C -0.15 -3.26 5.89 -19.80 -0.12 -3.37 16 3 C -0.06 -1.30 9.69 22.24 0.22 -1.08 16 4 C -0.18 -4.97 9.28 22.40 0.21 -4.76 16 5 C 0.18 5.20 6.60 38.15 0.25 5.45 16 6 N -0.55 -15.66 3.14 -627.70 -1.97 -17.63 16 7 C 0.11 2.76 5.61 86.83 0.49 3.25 16 8 C -0.11 -2.96 2.64 -10.48 -0.03 -2.99 16 9 H 0.14 3.10 7.44 -2.39 -0.02 3.08 16 10 C 0.46 18.42 6.87 87.65 0.60 19.02 16 11 O -0.61 -29.91 15.36 -3.09 -0.05 -29.96 16 12 N -0.45 -18.91 2.55 -645.44 -1.65 -20.56 16 13 C -0.33 -16.36 9.04 84.04 0.76 -15.60 16 14 H 0.08 4.02 7.63 -2.91 -0.02 4.00 16 15 C 0.01 0.50 5.15 84.93 0.44 0.94 16 16 N -0.89 -42.86 9.34 21.66 0.20 -42.66 16 17 Si 0.98 39.73 29.56 68.60 2.03 41.76 16 18 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 19 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 21 C 0.22 7.21 4.65 84.57 0.39 7.61 16 22 C 0.26 9.95 12.51 89.44 1.12 11.07 16 23 N -0.51 -21.53 18.54 20.01 0.37 -21.16 16 24 C -0.14 -2.96 5.17 30.59 0.16 -2.80 16 25 C 0.52 14.72 7.92 87.90 0.70 15.42 16 26 O -0.54 -17.98 14.82 -3.07 -0.05 -18.02 16 27 C -0.20 -5.24 9.38 22.43 0.21 -5.03 16 28 C 0.11 2.77 7.24 22.36 0.16 2.94 16 29 F -0.14 -3.53 16.47 44.97 0.74 -2.79 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16 32 H 0.06 1.04 7.63 -2.39 -0.02 1.02 16 33 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.15 4.50 5.25 -2.91 -0.02 4.48 16 35 H 0.08 2.53 6.56 -2.39 -0.02 2.51 16 36 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 38 H 0.12 4.14 7.02 -2.39 -0.02 4.12 16 39 H 0.14 3.04 4.65 -2.39 -0.01 3.02 16 40 H 0.17 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.12 2.62 6.23 -2.39 -0.01 2.61 16 42 H 0.14 3.54 7.01 -2.91 -0.02 3.52 16 Total: -1.00 -71.01 356.87 6.99 -64.03 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 1.10 Total: 17.87 kcal Atomic # 6 Polarization: 22.87 SS G_CDS: 6.26 Total: 29.13 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -3.04 Total: -102.01 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -0.09 Total: -47.98 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.74 Total: -2.79 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -71.01 6.99 -64.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749603306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.162 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds