Wall clock time and date at job start Wed Apr 1 2020 04:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47518 * 2 1 4 4 C 1.53003 * 109.47231 * 239.99849 * 2 1 3 5 5 N 1.46510 * 109.47253 * 120.00305 * 2 1 3 6 6 C 1.40004 * 119.99931 * 64.67124 * 5 2 1 7 7 C 1.38674 * 120.08176 * 354.08671 * 6 5 2 8 8 C 1.38443 * 119.97259 * 179.78714 * 7 6 5 9 9 F 1.35099 * 119.92925 * 180.23348 * 8 7 6 10 10 C 1.38447 * 120.13934 * 0.49499 * 8 7 6 11 11 S 1.76202 * 119.91142 * 179.76407 * 10 8 7 12 12 O 1.42099 * 106.40446 * 48.26408 * 11 10 8 13 13 O 1.42105 * 106.39980 * 181.18166 * 11 10 8 14 14 N 1.65596 * 107.21864 * 294.72202 * 11 10 8 15 15 C 1.46500 * 119.99985 * 65.00145 * 14 11 10 16 16 C 1.50709 * 109.46712 * 165.00221 * 15 14 11 17 17 H 1.08000 * 120.00282 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99550 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00420 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00033 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47251 * 89.99908 * 20 18 16 22 22 H 1.48506 * 109.47450 * 209.99816 * 20 18 16 23 23 H 1.48498 * 109.47212 * 329.99620 * 20 18 16 24 24 C 1.38279 * 120.17015 * 359.48604 * 10 8 7 25 25 C 1.38630 * 120.02394 * 0.27431 * 24 10 8 26 26 N 1.40161 * 120.07333 * 179.97438 * 25 24 10 27 27 H 1.09001 * 109.46885 * 308.61015 * 1 2 3 28 28 H 1.08999 * 109.47270 * 68.60743 * 1 2 3 29 29 H 1.08997 * 109.47510 * 188.61632 * 1 2 3 30 30 H 1.09001 * 109.47511 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47293 * 300.00185 * 3 2 1 32 32 H 1.08999 * 109.47578 * 59.99972 * 3 2 1 33 33 H 1.09005 * 109.47226 * 292.68000 * 4 2 1 34 34 H 1.09001 * 109.46867 * 52.67128 * 4 2 1 35 35 H 1.08993 * 109.47186 * 172.67598 * 4 2 1 36 36 H 0.96993 * 119.99560 * 244.67417 * 5 2 1 37 37 H 1.07990 * 120.01563 * 0.02562 * 7 6 5 38 38 H 0.97009 * 119.99747 * 245.00218 * 14 11 10 39 39 H 1.09000 * 109.47200 * 284.99739 * 15 14 11 40 40 H 1.08998 * 109.47065 * 45.00378 * 15 14 11 41 41 H 0.96996 * 120.00407 * 180.02562 * 19 18 16 42 42 H 1.08005 * 119.99241 * 180.25729 * 24 10 8 43 43 H 0.96993 * 120.00130 * 0.02562 * 26 25 24 44 44 H 0.97003 * 119.99773 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 1.7627 -2.0563 1.3695 7 6 0.9451 -2.7294 0.4742 8 6 0.6973 -4.0807 0.6452 9 9 -0.0955 -4.7367 -0.2302 10 6 1.2559 -4.7600 1.7144 11 16 0.9315 -6.4785 1.9298 12 8 1.1527 -7.0901 0.6663 13 8 1.6140 -6.8704 3.1130 14 7 -0.6858 -6.6359 2.2488 15 6 -1.6723 -6.2748 1.2277 16 6 -3.0168 -6.8410 1.6059 17 1 -3.1254 -7.4130 2.5156 18 6 -4.1079 -6.6298 0.7900 19 7 -3.9756 -5.9337 -0.3180 20 14 -5.7743 -7.3321 1.2583 21 1 -6.5135 -6.3441 2.0845 22 1 -6.5507 -7.6276 0.0273 23 1 -5.5836 -8.5831 2.0353 24 6 2.0723 -4.0947 2.6104 25 6 2.3291 -2.7427 2.4431 26 7 3.1560 -2.0672 3.3510 27 1 -0.3633 0.6413 0.8030 28 1 -0.3634 0.3748 -0.9568 29 1 -0.3634 -1.0160 0.1540 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.7875 -1.7798 -1.1862 34 1 1.5736 -0.2887 -2.1344 35 1 3.1220 -0.6092 -1.3172 36 1 2.5188 -0.2019 1.8681 37 1 0.5049 -2.2007 -0.3582 38 1 -0.9799 -6.9671 3.1118 39 1 -1.7420 -5.1893 1.1575 40 1 -1.3643 -6.6822 0.2648 41 1 -4.7433 -5.7848 -0.8918 42 1 2.5100 -4.6284 3.4412 43 1 3.5497 -2.5457 4.0972 44 1 3.3347 -1.1211 3.2330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845922718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:12 Heat of formation + Delta-G solvation = -76.357846 kcal Electronic energy + Delta-G solvation = -29486.279452 eV Core-core repulsion = 25287.583578 eV Total energy + Delta-G solvation = -4198.695874 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.131 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -48.53776 -40.23732 -37.56017 -36.49057 -35.16238 -34.48722 -34.36887 -32.52865 -32.03533 -29.90794 -27.89254 -27.49632 -27.45706 -26.61049 -23.20671 -22.39404 -22.18317 -20.12488 -18.97003 -18.26955 -17.80035 -17.09616 -16.95498 -16.00866 -15.81990 -15.75543 -15.47452 -15.11716 -14.91858 -14.67678 -14.54577 -14.38997 -13.83836 -13.56882 -13.32771 -13.04808 -12.88877 -12.57373 -12.47041 -12.37099 -12.30643 -12.01538 -11.89565 -11.70750 -11.67822 -11.54718 -11.43770 -11.31360 -10.93394 -10.87313 -10.66201 -10.42960 -10.32651 -10.19484 -9.99878 -9.26659 -8.79599 -8.24170 -8.08767 -7.09939 -6.06187 -4.10812 0.99555 1.24167 1.46223 2.96077 3.31164 3.37444 3.41089 3.53683 3.75128 3.92405 4.33271 4.41523 4.42873 4.54220 4.59702 4.70018 4.75268 5.15501 5.20617 5.24229 5.29659 5.30640 5.44701 5.48478 5.52492 5.58577 5.65328 5.69413 5.79847 5.86172 5.97029 6.05504 6.09842 6.18953 6.60550 6.74243 6.92102 7.27983 7.44585 7.51935 7.52761 7.63778 7.91459 7.95587 8.30909 8.93472 9.52985 11.03596 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011311 B = 0.004010 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.980255 B = 6980.211841 C = 8586.775391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.173 3.827 3 C -0.152 4.152 4 C -0.182 4.182 5 N -0.734 5.734 6 C 0.230 3.770 7 C -0.231 4.231 8 C 0.203 3.797 9 F -0.107 7.107 10 C -0.718 4.718 11 S 2.696 3.304 12 O -0.958 6.958 13 O -0.984 6.984 14 N -1.103 6.103 15 C 0.245 3.755 16 C -0.529 4.529 17 H 0.064 0.936 18 C 0.062 3.938 19 N -0.887 5.887 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.036 4.036 25 C 0.112 3.888 26 N -0.885 5.885 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.395 0.605 37 H 0.159 0.841 38 H 0.410 0.590 39 H 0.024 0.976 40 H 0.043 0.957 41 H 0.264 0.736 42 H 0.146 0.854 43 H 0.401 0.599 44 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.981 16.300 3.055 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.087 3.913 3 C -0.209 4.209 4 C -0.240 4.240 5 N -0.365 5.365 6 C 0.123 3.877 7 C -0.255 4.255 8 C 0.180 3.820 9 F -0.085 7.085 10 C -0.807 4.807 11 S 2.783 3.217 12 O -0.948 6.948 13 O -0.974 6.974 14 N -0.865 5.865 15 C 0.122 3.878 16 C -0.569 4.569 17 H 0.083 0.917 18 C -0.141 4.141 19 N -0.525 5.525 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.061 4.061 25 C 0.007 3.993 26 N -0.430 5.430 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.230 0.770 37 H 0.176 0.824 38 H 0.244 0.756 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.164 0.836 43 H 0.229 0.771 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 14.399 15.832 2.351 21.529 hybrid contribution -1.037 0.752 0.855 1.540 sum 13.361 16.584 3.206 21.537 Atomic orbital electron populations 1.22573 0.94530 1.04294 1.02515 1.20294 0.94053 0.91945 0.85045 1.22034 1.01435 0.94413 1.03048 1.22570 1.01634 1.03038 0.96712 1.44772 1.62055 1.05753 1.23921 1.17129 0.93622 0.84161 0.92759 1.20918 1.06426 0.93561 1.04596 1.16654 0.88805 0.89898 0.86625 1.91731 1.69880 1.80276 1.66579 1.30645 1.15677 1.28631 1.05710 1.01647 0.73001 0.73538 0.73488 1.93581 1.84866 1.73110 1.43278 1.93490 1.73549 1.81706 1.48648 1.55453 1.23688 1.80953 1.26451 1.19261 0.86639 0.95855 0.86045 1.21241 0.92777 1.34632 1.08270 0.91738 1.24954 0.99188 0.95180 0.94813 1.69964 1.30945 1.39216 1.12362 0.86465 0.83387 0.79413 0.77931 1.20640 1.21086 1.19741 1.19880 0.96570 0.91719 0.97960 1.17236 0.97633 0.91830 0.92565 1.42073 1.57214 1.11851 1.31831 0.92155 0.91389 0.90206 0.92046 0.90693 0.92027 0.90085 0.91342 0.92226 0.76982 0.82392 0.75628 0.95826 0.93895 0.92626 0.83592 0.77075 0.78345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.32 37.15 0.31 -1.42 16 2 C 0.17 1.45 1.06 -131.82 -0.14 1.31 16 3 C -0.15 -0.89 8.58 37.15 0.32 -0.58 16 4 C -0.18 -1.65 8.22 37.16 0.31 -1.34 16 5 N -0.73 -6.70 5.24 -45.82 -0.24 -6.94 16 6 C 0.23 2.92 6.25 -83.51 -0.52 2.40 16 7 C -0.23 -3.50 6.55 -39.34 -0.26 -3.76 16 8 C 0.20 3.79 6.79 -39.43 -0.27 3.53 16 9 F -0.11 -2.33 12.92 2.25 0.03 -2.30 16 10 C -0.72 -13.03 5.89 -39.49 -0.23 -13.26 16 11 S 2.70 54.91 5.48 -107.50 -0.59 54.32 16 12 O -0.96 -22.62 16.87 -57.17 -0.96 -23.59 16 13 O -0.98 -19.89 16.96 -57.17 -0.97 -20.86 16 14 N -1.10 -24.01 5.99 -11.65 -0.07 -24.08 16 15 C 0.24 6.39 4.32 -5.19 -0.02 6.36 16 16 C -0.53 -14.69 9.27 -34.44 -0.32 -15.01 16 17 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 20 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 24 C -0.04 -0.54 9.39 -39.42 -0.37 -0.91 16 25 C 0.11 1.42 6.78 -83.45 -0.57 0.85 16 26 N -0.88 -7.47 9.09 32.56 0.30 -7.17 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 29 H 0.08 0.96 4.85 -51.93 -0.25 0.71 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.91 4.60 -51.93 -0.24 0.67 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.39 2.73 6.68 -40.82 -0.27 2.46 16 37 H 0.16 2.18 3.65 -52.49 -0.19 1.99 16 38 H 0.41 8.05 8.54 -34.47 -0.29 7.76 16 39 H 0.02 0.63 6.76 -51.93 -0.35 0.28 16 40 H 0.04 1.23 7.24 -51.93 -0.38 0.85 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.15 1.97 7.33 -52.48 -0.38 1.59 16 43 H 0.40 2.80 8.85 -40.82 -0.36 2.44 16 44 H 0.39 2.38 7.02 -40.82 -0.29 2.10 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -34.58 361.89 -8.70 -43.27 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.50 Total: 11.02 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -1.86 Total: -20.19 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: 0.72 Total: -63.35 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -1.93 Total: -44.44 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.03 Total: -2.30 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 54.91 SS G_CDS: -0.59 Total: 54.32 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.58 -8.70 -43.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845922718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.084 kcal (2) G-P(sol) polarization free energy of solvation -34.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds