Wall clock time and date at job start Wed Apr 1 2020 04:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47518 * 2 1 4 4 C 1.53003 * 109.47231 * 239.99849 * 2 1 3 5 5 N 1.46510 * 109.47253 * 120.00305 * 2 1 3 6 6 C 1.40004 * 119.99931 * 64.67124 * 5 2 1 7 7 C 1.38674 * 120.08176 * 354.08671 * 6 5 2 8 8 C 1.38443 * 119.97259 * 179.78714 * 7 6 5 9 9 F 1.35099 * 119.92925 * 180.23348 * 8 7 6 10 10 C 1.38447 * 120.13934 * 0.49499 * 8 7 6 11 11 S 1.76202 * 119.91142 * 179.76407 * 10 8 7 12 12 O 1.42099 * 106.40446 * 48.26408 * 11 10 8 13 13 O 1.42105 * 106.39980 * 181.18166 * 11 10 8 14 14 N 1.65596 * 107.21864 * 294.72202 * 11 10 8 15 15 C 1.46500 * 119.99985 * 65.00145 * 14 11 10 16 16 C 1.50709 * 109.46712 * 165.00221 * 15 14 11 17 17 H 1.08000 * 120.00282 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99550 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00420 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00033 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47251 * 89.99908 * 20 18 16 22 22 H 1.48506 * 109.47450 * 209.99816 * 20 18 16 23 23 H 1.48498 * 109.47212 * 329.99620 * 20 18 16 24 24 C 1.38279 * 120.17015 * 359.48604 * 10 8 7 25 25 C 1.38630 * 120.02394 * 0.27431 * 24 10 8 26 26 N 1.40161 * 120.07333 * 179.97438 * 25 24 10 27 27 H 1.09001 * 109.46885 * 308.61015 * 1 2 3 28 28 H 1.08999 * 109.47270 * 68.60743 * 1 2 3 29 29 H 1.08997 * 109.47510 * 188.61632 * 1 2 3 30 30 H 1.09001 * 109.47511 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47293 * 300.00185 * 3 2 1 32 32 H 1.08999 * 109.47578 * 59.99972 * 3 2 1 33 33 H 1.09005 * 109.47226 * 292.68000 * 4 2 1 34 34 H 1.09001 * 109.46867 * 52.67128 * 4 2 1 35 35 H 1.08993 * 109.47186 * 172.67598 * 4 2 1 36 36 H 0.96993 * 119.99560 * 244.67417 * 5 2 1 37 37 H 1.07990 * 120.01563 * 0.02562 * 7 6 5 38 38 H 0.97009 * 119.99747 * 245.00218 * 14 11 10 39 39 H 1.09000 * 109.47200 * 284.99739 * 15 14 11 40 40 H 1.08998 * 109.47065 * 45.00378 * 15 14 11 41 41 H 0.96996 * 120.00407 * 180.02562 * 19 18 16 42 42 H 1.08005 * 119.99241 * 180.25729 * 24 10 8 43 43 H 0.96993 * 120.00130 * 0.02562 * 26 25 24 44 44 H 0.97003 * 119.99773 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 1.7627 -2.0563 1.3695 7 6 0.9451 -2.7294 0.4742 8 6 0.6973 -4.0807 0.6452 9 9 -0.0955 -4.7367 -0.2302 10 6 1.2559 -4.7600 1.7144 11 16 0.9315 -6.4785 1.9298 12 8 1.1527 -7.0901 0.6663 13 8 1.6140 -6.8704 3.1130 14 7 -0.6858 -6.6359 2.2488 15 6 -1.6723 -6.2748 1.2277 16 6 -3.0168 -6.8410 1.6059 17 1 -3.1254 -7.4130 2.5156 18 6 -4.1079 -6.6298 0.7900 19 7 -3.9756 -5.9337 -0.3180 20 14 -5.7743 -7.3321 1.2583 21 1 -6.5135 -6.3441 2.0845 22 1 -6.5507 -7.6276 0.0273 23 1 -5.5836 -8.5831 2.0353 24 6 2.0723 -4.0947 2.6104 25 6 2.3291 -2.7427 2.4431 26 7 3.1560 -2.0672 3.3510 27 1 -0.3633 0.6413 0.8030 28 1 -0.3634 0.3748 -0.9568 29 1 -0.3634 -1.0160 0.1540 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.7875 -1.7798 -1.1862 34 1 1.5736 -0.2887 -2.1344 35 1 3.1220 -0.6092 -1.3172 36 1 2.5188 -0.2019 1.8681 37 1 0.5049 -2.2007 -0.3582 38 1 -0.9799 -6.9671 3.1118 39 1 -1.7420 -5.1893 1.1575 40 1 -1.3643 -6.6822 0.2648 41 1 -4.7433 -5.7848 -0.8918 42 1 2.5100 -4.6284 3.4412 43 1 3.5497 -2.5457 4.0972 44 1 3.3347 -1.1211 3.2330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845922718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:11 Heat of formation + Delta-G solvation = -104.617661 kcal Electronic energy + Delta-G solvation = -29487.504890 eV Core-core repulsion = 25287.583578 eV Total energy + Delta-G solvation = -4199.921312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.131 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.04172 -41.24624 -38.47904 -38.17118 -36.88934 -36.43849 -35.41785 -34.10219 -33.44544 -30.94785 -28.95060 -28.69100 -28.24258 -28.13415 -24.52664 -24.27147 -23.38390 -20.96927 -20.51061 -19.50905 -19.31842 -18.61225 -18.17001 -17.68410 -17.26066 -17.01809 -16.78469 -16.68045 -16.27187 -16.06332 -15.51589 -15.37834 -15.16862 -15.03092 -14.60323 -14.37890 -14.19038 -13.91337 -13.79897 -13.56492 -13.48962 -13.28882 -13.17348 -13.07060 -13.04649 -12.73868 -12.64148 -12.62597 -12.50214 -12.28807 -12.09950 -11.99962 -11.59016 -11.36317 -11.30609 -11.23615 -10.81274 -10.07941 -9.32964 -8.19828 -8.06546 -6.33456 -0.49777 -0.13168 0.25488 1.44748 1.46962 1.57992 2.09805 2.14828 2.42536 2.48311 2.72434 2.89508 3.13303 3.26424 3.43490 3.72604 3.81365 3.94673 4.06397 4.16179 4.37384 4.49398 4.64216 4.66497 4.67568 4.70109 4.80836 4.81569 4.89577 4.93454 4.94945 4.98231 5.21460 5.32863 5.33094 5.34748 5.36903 5.55878 5.78515 5.98393 6.01721 6.35739 6.44265 6.71223 6.81164 6.98876 7.35537 8.91153 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011311 B = 0.004010 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.980255 B = 6980.211841 C = 8586.775391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.170 3.830 3 C -0.145 4.145 4 C -0.184 4.184 5 N -0.714 5.714 6 C 0.241 3.759 7 C -0.231 4.231 8 C 0.163 3.837 9 F -0.138 7.138 10 C -0.728 4.728 11 S 2.709 3.291 12 O -0.999 6.999 13 O -0.982 6.982 14 N -1.105 6.105 15 C 0.263 3.737 16 C -0.554 4.554 17 H 0.074 0.926 18 C 0.008 3.992 19 N -0.923 5.923 20 Si 0.974 3.026 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.264 1.264 24 C -0.051 4.051 25 C 0.130 3.870 26 N -0.863 5.863 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.410 0.590 37 H 0.167 0.833 38 H 0.418 0.582 39 H 0.012 0.988 40 H 0.008 0.992 41 H 0.268 0.732 42 H 0.162 0.838 43 H 0.412 0.588 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.808 19.038 4.729 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.085 3.915 3 C -0.203 4.203 4 C -0.241 4.241 5 N -0.345 5.345 6 C 0.131 3.869 7 C -0.256 4.256 8 C 0.139 3.861 9 F -0.116 7.116 10 C -0.821 4.821 11 S 2.801 3.199 12 O -0.989 6.989 13 O -0.973 6.973 14 N -0.866 5.866 15 C 0.138 3.862 16 C -0.593 4.593 17 H 0.092 0.908 18 C -0.192 4.192 19 N -0.562 5.562 20 Si 0.798 3.202 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.078 4.078 25 C 0.023 3.977 26 N -0.410 5.410 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.249 0.751 37 H 0.184 0.816 38 H 0.253 0.747 39 H 0.030 0.970 40 H 0.026 0.974 41 H 0.077 0.923 42 H 0.179 0.821 43 H 0.243 0.757 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 15.265 18.586 4.085 24.396 hybrid contribution -1.140 0.130 0.344 1.198 sum 14.125 18.716 4.429 23.863 Atomic orbital electron populations 1.22583 0.95452 1.02599 1.03472 1.20448 0.93351 0.93536 0.84213 1.22000 1.02132 0.92020 1.04108 1.22578 1.02324 1.01536 0.97705 1.44865 1.60901 1.04223 1.24514 1.17155 0.92294 0.85624 0.91847 1.21041 1.06777 0.92282 1.05484 1.17056 0.90360 0.91385 0.87265 1.91643 1.71157 1.81119 1.67729 1.30104 1.18060 1.26701 1.07246 1.00913 0.72162 0.74313 0.72550 1.93524 1.85135 1.75241 1.45047 1.93474 1.73054 1.82516 1.48239 1.55279 1.23768 1.81575 1.25993 1.18768 0.87101 0.94722 0.85568 1.21675 0.93704 1.35057 1.08895 0.90757 1.25928 1.03405 0.95311 0.94562 1.70107 1.32300 1.40290 1.13467 0.85317 0.78099 0.78986 0.77789 1.19414 1.20739 1.18808 1.20035 0.96750 0.92938 0.98031 1.17210 0.96839 0.91114 0.92573 1.42035 1.55449 1.12594 1.30881 0.91505 0.90261 0.93107 0.90895 0.89685 0.91013 0.92657 0.90128 0.91387 0.75124 0.81647 0.74671 0.97034 0.97379 0.92343 0.82097 0.75684 0.76494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.32 71.98 0.60 -2.64 16 2 C 0.17 2.43 1.06 3.60 0.00 2.44 16 3 C -0.15 -1.14 8.58 71.98 0.62 -0.53 16 4 C -0.18 -3.04 8.22 71.98 0.59 -2.45 16 5 N -0.71 -10.97 5.24 -298.87 -1.56 -12.53 16 6 C 0.24 5.76 6.25 38.23 0.24 5.99 16 7 C -0.23 -7.20 6.55 22.42 0.15 -7.05 16 8 C 0.16 6.44 6.79 22.37 0.15 6.59 16 9 F -0.14 -6.61 12.92 44.97 0.58 -6.03 16 10 C -0.73 -27.43 5.89 22.33 0.13 -27.29 16 11 S 2.71 115.74 5.48 -56.49 -0.31 115.43 16 12 O -1.00 -50.37 16.87 -128.00 -2.16 -52.53 16 13 O -0.98 -40.27 16.96 -128.00 -2.17 -42.44 16 14 N -1.10 -50.51 5.99 -190.78 -1.14 -51.65 16 15 C 0.26 14.51 4.32 85.64 0.37 14.88 16 16 C -0.55 -31.62 9.27 25.60 0.24 -31.38 16 17 H 0.07 3.97 7.65 -2.91 -0.02 3.95 16 18 C 0.01 0.45 5.46 84.65 0.46 0.92 16 19 N -0.92 -55.64 13.29 21.45 0.28 -55.36 16 20 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 C -0.05 -1.51 9.39 22.37 0.21 -1.30 16 25 C 0.13 3.01 6.78 38.19 0.26 3.27 16 26 N -0.86 -11.34 9.09 -50.90 -0.46 -11.80 16 27 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 28 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 29 H 0.05 1.22 4.85 -2.39 -0.01 1.21 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.56 8.14 -2.38 -0.02 0.55 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 1.23 4.60 -2.38 -0.01 1.22 16 34 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.41 3.90 6.68 -92.71 -0.62 3.28 16 37 H 0.17 4.79 3.65 -2.92 -0.01 4.78 16 38 H 0.42 17.03 8.54 -96.74 -0.83 16.21 16 39 H 0.01 0.68 6.76 -2.39 -0.02 0.66 16 40 H 0.01 0.51 7.24 -2.39 -0.02 0.49 16 41 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.16 4.13 7.33 -2.91 -0.02 4.11 16 43 H 0.41 4.15 8.85 -92.71 -0.82 3.33 16 44 H 0.40 3.10 7.02 -92.71 -0.65 2.45 16 Total: -1.00 -78.43 361.89 -2.71 -81.14 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -1.81 Total: 28.39 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 4.02 Total: -38.55 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -2.89 Total: -131.34 kcal Atomic # 8 Polarization: -90.64 SS G_CDS: -4.33 Total: -94.97 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.58 Total: -6.03 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 115.74 SS G_CDS: -0.31 Total: 115.43 kcal Total: -78.43 -2.71 -81.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845922718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.478 kcal (2) G-P(sol) polarization free energy of solvation -78.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds