Wall clock time and date at job start Wed Apr 1 2020 03:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38053 * 126.29257 * 2 1 4 4 C 1.47415 * 126.41380 * 359.73148 * 3 2 1 5 5 O 1.21625 * 120.00270 * 318.51286 * 4 3 2 6 6 N 1.34781 * 119.99788 * 138.52120 * 4 3 2 7 7 C 1.47298 * 121.16569 * 3.28195 * 6 4 3 8 8 C 1.53540 * 107.56189 * 221.96241 * 7 6 4 9 9 O 1.42948 * 108.81414 * 301.76058 * 8 7 6 10 10 C 1.35909 * 117.78248 * 49.45310 * 9 8 7 11 11 C 1.38697 * 119.63803 * 159.88569 * 10 9 8 12 12 C 1.38738 * 119.95361 * 179.06947 * 11 10 9 13 13 F 1.35097 * 119.84896 * 180.24539 * 12 11 10 14 14 C 1.38476 * 120.26623 * 0.76774 * 12 11 10 15 15 C 1.38252 * 120.03387 * 359.55235 * 14 12 11 16 16 C 1.38567 * 119.91014 * 359.97438 * 15 14 12 17 17 C 1.41301 * 107.17228 * 179.73757 * 3 2 1 18 18 N 1.30456 * 108.01994 * 359.97438 * 17 3 2 19 19 N 1.34276 * 126.29331 * 179.68222 * 2 1 3 20 20 C 1.46490 * 125.75437 * 0.26759 * 19 2 1 21 21 C 1.50699 * 109.47381 * 89.99506 * 20 19 2 22 22 H 1.08001 * 119.99766 * 359.97438 * 21 20 19 23 23 C 1.37877 * 120.00244 * 180.02562 * 21 20 19 24 24 N 1.31519 * 119.99791 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00214 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46987 * 59.99636 * 25 23 21 27 27 H 1.48500 * 109.47346 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46842 * 299.99657 * 25 23 21 29 29 H 1.09000 * 109.47300 * 90.02642 * 1 2 3 30 30 H 1.09001 * 109.47185 * 210.03053 * 1 2 3 31 31 H 1.08997 * 109.47064 * 330.02927 * 1 2 3 32 32 H 1.08995 * 109.84080 * 341.47404 * 7 6 4 33 33 H 1.08997 * 109.83973 * 102.45241 * 7 6 4 34 34 H 1.08998 * 109.58222 * 61.56395 * 8 7 6 35 35 H 1.09003 * 109.58231 * 181.96511 * 8 7 6 36 36 H 1.08001 * 119.98502 * 359.82598 * 11 10 9 37 37 H 1.08001 * 119.97768 * 179.53492 * 14 12 11 38 38 H 1.08004 * 120.04281 * 179.97438 * 15 14 12 39 39 H 1.07997 * 125.98494 * 179.97438 * 17 3 2 40 40 H 1.09004 * 109.47510 * 209.99737 * 20 19 2 41 41 H 1.09003 * 109.47168 * 329.99995 * 20 19 2 42 42 H 0.97003 * 119.99593 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5202 -0.0056 5 8 0.9544 2.8644 -0.7078 6 7 2.5176 3.4257 0.7675 7 6 3.6932 3.0527 1.5728 8 6 3.5474 3.7263 2.9449 9 8 3.4486 5.1398 2.7563 10 6 2.5560 5.5956 1.8383 11 6 2.1166 6.9096 1.9026 12 6 1.2203 7.3872 0.9574 13 9 0.7975 8.6688 1.0190 14 6 0.7493 6.5526 -0.0422 15 6 1.1787 5.2401 -0.1073 16 6 2.0813 4.7612 0.8287 17 6 3.6591 0.6499 0.0062 18 7 3.6341 -0.6544 0.0102 19 7 2.3018 -1.0822 0.0060 20 6 1.8503 -2.4758 0.0082 21 6 1.7006 -2.9577 -1.4118 22 1 1.9196 -2.2922 -2.2338 23 6 1.2833 -4.2478 -1.6618 24 7 1.0152 -5.0577 -0.6608 25 14 1.0985 -4.8453 -3.4220 26 1 2.4075 -4.7507 -4.1168 27 1 0.6407 -6.2579 -3.4198 28 1 0.1009 -4.0023 -4.1287 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 3.7300 1.9702 1.6943 33 1 4.6025 3.4021 1.0840 34 1 2.6472 3.3597 3.4380 35 1 4.4200 3.4997 3.5576 36 1 2.4817 7.5634 2.6808 37 1 0.0459 6.9273 -0.7711 38 1 0.8111 4.5889 -0.8866 39 1 4.5449 1.2677 0.0074 40 1 2.5830 -3.0944 0.5265 41 1 0.8897 -2.5458 0.5186 42 1 0.7219 -5.9655 -0.8367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889053339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:06 Heat of formation + Delta-G solvation = 1.175495 kcal Electronic energy + Delta-G solvation = -29714.126043 eV Core-core repulsion = 25383.348315 eV Total energy + Delta-G solvation = -4330.777728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.00455 -41.65474 -40.73032 -38.86758 -37.48733 -35.56537 -34.00051 -32.27886 -31.59757 -31.10644 -30.46339 -28.72510 -27.29976 -26.73415 -24.72132 -23.94523 -23.21237 -22.58849 -20.89221 -20.07461 -18.88292 -18.59982 -17.55316 -17.49900 -16.90254 -16.42001 -16.28483 -15.83603 -15.56165 -15.41470 -15.17180 -14.97256 -14.67186 -14.51423 -14.26636 -13.91698 -13.62398 -13.42619 -13.12744 -13.01165 -12.60230 -12.52285 -12.44726 -12.24823 -11.98979 -11.75989 -11.65089 -11.52861 -11.19254 -11.11754 -10.94512 -10.43053 -10.40525 -10.21356 -10.04074 -9.43939 -8.81425 -8.77872 -8.76259 -8.19358 -7.86068 -6.41220 -4.49593 0.89215 1.06014 2.01972 2.42526 2.55841 2.87445 3.14372 3.15697 3.20013 3.24144 3.28278 3.50776 4.16135 4.18262 4.24083 4.36893 4.62129 4.71361 4.80640 4.88089 4.94956 4.96164 5.00153 5.14648 5.25256 5.27517 5.36263 5.47022 5.49875 5.69677 5.86355 5.88244 5.93831 6.17273 6.21994 6.29202 6.31357 6.59429 6.64478 6.77855 6.96717 7.03646 7.15039 7.44874 7.63589 7.68044 8.08936 8.20530 8.55475 9.18031 10.66894 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022063 B = 0.002516 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.762334 B =11125.383991 C =11916.123360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.163 3.837 3 C -0.334 4.334 4 C 0.613 3.387 5 O -0.520 6.520 6 N -0.554 5.554 7 C 0.059 3.941 8 C 0.048 3.952 9 O -0.309 6.309 10 C 0.118 3.882 11 C -0.165 4.165 12 C 0.103 3.897 13 F -0.139 7.139 14 C -0.160 4.160 15 C -0.094 4.094 16 C 0.082 3.918 17 C 0.054 3.946 18 N -0.288 5.288 19 N -0.309 5.309 20 C 0.251 3.749 21 C -0.543 4.543 22 H 0.065 0.935 23 C 0.069 3.931 24 N -0.889 5.889 25 Si 0.908 3.092 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.184 0.816 39 H 0.179 0.821 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.616 18.742 7.295 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.026 3.974 3 C -0.349 4.349 4 C 0.406 3.594 5 O -0.397 6.397 6 N -0.278 5.278 7 C -0.064 4.064 8 C -0.028 4.028 9 O -0.223 6.223 10 C 0.070 3.930 11 C -0.185 4.185 12 C 0.083 3.917 13 F -0.118 7.118 14 C -0.179 4.179 15 C -0.114 4.114 16 C -0.012 4.012 17 C -0.132 4.132 18 N -0.108 5.108 19 N -0.086 5.086 20 C 0.134 3.866 21 C -0.581 4.581 22 H 0.084 0.916 23 C -0.135 4.135 24 N -0.527 5.527 25 Si 0.735 3.265 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.198 1.198 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.140 0.860 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.201 0.799 39 H 0.196 0.804 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.878 17.479 7.095 19.083 hybrid contribution -0.458 0.315 -0.921 1.076 sum 2.420 17.794 6.174 18.989 Atomic orbital electron populations 1.20475 0.86827 1.03151 1.04350 1.21349 0.94799 0.86382 0.94893 1.19401 0.93714 0.91420 1.30382 1.17527 0.80393 0.83926 0.77508 1.90511 1.29424 1.79238 1.40554 1.45623 1.30383 1.06898 1.44942 1.22969 0.88096 1.03836 0.91468 1.23391 1.04464 0.78281 0.96667 1.86029 1.55749 1.24435 1.56039 1.18154 0.93367 0.92825 0.88618 1.20231 1.01375 0.94735 1.02195 1.17378 0.97734 0.79319 0.97305 1.91489 1.88640 1.35525 1.96110 1.21118 1.03470 0.93736 0.99612 1.22027 0.95345 0.95250 0.98775 1.18100 1.01417 0.84740 0.96989 1.23804 0.96002 0.92560 1.00876 1.77190 0.98585 1.11950 1.23120 1.49400 1.02358 1.08336 1.48469 1.19896 0.96452 0.70632 0.99593 1.21197 1.47811 0.98217 0.90908 0.91638 1.24916 0.94300 0.95959 0.98369 1.69899 1.44207 1.07348 1.31196 0.86370 0.78958 0.77798 0.83373 1.19858 1.20827 1.19777 0.89130 0.90315 0.90457 0.85973 0.89227 0.90809 0.85621 0.83774 0.84273 0.79931 0.80433 0.92369 0.92490 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.61 36.00 0.35 -1.10 16 2 C 0.16 3.00 7.00 -81.59 -0.57 2.43 16 3 C -0.33 -5.52 5.30 -105.07 -0.56 -6.07 16 4 C 0.61 9.50 7.25 -12.52 -0.09 9.41 16 5 O -0.52 -9.03 13.25 5.26 0.07 -8.96 16 6 N -0.55 -7.12 3.01 -113.48 -0.34 -7.46 16 7 C 0.06 0.55 5.46 -3.33 -0.02 0.53 16 8 C 0.05 0.39 7.18 37.44 0.27 0.66 16 9 O -0.31 -3.27 10.32 -19.45 -0.20 -3.47 16 10 C 0.12 1.40 6.52 -39.01 -0.25 1.14 16 11 C -0.17 -1.82 9.97 -39.23 -0.39 -2.21 16 12 C 0.10 1.17 7.30 -39.31 -0.29 0.88 16 13 F -0.14 -1.59 17.26 2.25 0.04 -1.55 16 14 C -0.16 -1.82 10.02 -39.49 -0.40 -2.21 16 15 C -0.09 -1.23 9.02 -39.45 -0.36 -1.59 16 16 C 0.08 1.07 6.34 -83.29 -0.53 0.54 16 17 C 0.05 0.85 9.63 -16.97 -0.16 0.69 16 18 N -0.29 -5.69 12.50 30.86 0.39 -5.30 16 19 N -0.31 -6.44 3.56 -57.77 -0.21 -6.64 16 20 C 0.25 5.88 5.97 -5.20 -0.03 5.85 16 21 C -0.54 -14.08 9.39 -34.44 -0.32 -14.40 16 22 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 23 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -23.80 13.29 55.43 0.74 -23.06 16 25 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.08 1.23 7.05 -51.93 -0.37 0.87 16 31 H 0.08 1.12 7.79 -51.93 -0.40 0.71 16 32 H 0.12 1.14 5.03 -51.93 -0.26 0.88 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.18 2.65 4.92 -53.50 -0.26 2.38 16 39 H 0.18 2.05 7.12 -52.49 -0.37 1.68 16 40 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.06 1.32 7.01 -51.93 -0.36 0.95 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -29.64 357.33 -7.14 -36.78 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.54 Total: 2.75 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -3.45 Total: -3.76 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.57 Total: -42.47 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.13 Total: -12.43 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.64 -7.14 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889053339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.958 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds