Wall clock time and date at job start Wed Apr 1 2020 03:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38039 * 126.29302 * 2 1 4 4 C 1.47429 * 126.41402 * 0.02562 * 3 2 1 5 5 O 1.21603 * 119.99837 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00109 * 179.97438 * 4 3 2 7 7 C 1.47060 * 136.05778 * 359.62463 * 6 4 3 8 8 C 1.53756 * 87.88972 * 152.96576 * 7 6 4 9 9 C 1.53004 * 114.08862 * 139.77966 * 8 7 6 10 10 C 1.50699 * 109.47056 * 91.56179 * 9 8 7 11 11 C 1.38426 * 122.53949 * 269.73909 * 10 9 8 12 12 C 1.33394 * 114.91850 * 179.75978 * 11 10 9 13 13 S 1.75887 * 109.59446 * 0.47753 * 12 11 10 14 14 C 1.33385 * 122.54042 * 90.02749 * 10 9 8 15 15 C 1.47069 * 136.05603 * 180.02562 * 6 4 3 16 16 C 1.41289 * 107.17227 * 179.90590 * 3 2 1 17 17 N 1.30449 * 108.02172 * 0.36634 * 16 3 2 18 18 N 1.34255 * 126.29135 * 180.31716 * 2 1 3 19 19 C 1.46504 * 125.75251 * 359.97438 * 18 2 1 20 20 C 1.50697 * 109.47391 * 90.00455 * 19 18 2 21 21 H 1.08005 * 119.99554 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00346 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99952 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00030 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46962 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46754 * 120.00254 * 24 22 20 27 27 H 1.48497 * 109.47186 * 240.00169 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.70923 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.71024 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.71004 * 1 2 3 31 31 H 1.09003 * 113.47333 * 267.70124 * 7 6 4 32 32 H 1.08997 * 113.46811 * 38.13615 * 7 6 4 33 33 H 1.09000 * 114.57548 * 272.66323 * 8 7 6 34 34 H 1.08993 * 109.47358 * 211.56291 * 9 8 7 35 35 H 1.09002 * 109.47297 * 331.56775 * 9 8 7 36 36 H 1.07998 * 122.53891 * 359.97438 * 11 10 9 37 37 H 1.08003 * 125.20275 * 180.20416 * 12 11 10 38 38 H 1.08004 * 125.20186 * 0.02562 * 14 10 9 39 39 H 1.08997 * 113.46995 * 321.86091 * 15 6 4 40 40 H 1.08999 * 113.46908 * 92.30069 * 15 6 4 41 41 H 1.07999 * 125.98857 * 180.11575 * 16 3 2 42 42 H 1.09004 * 109.46833 * 209.99868 * 19 18 2 43 43 H 1.08996 * 109.47495 * 329.99908 * 19 18 2 44 44 H 0.97002 * 120.00041 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 0.6996 2.7877 0.0006 6 7 2.8000 3.5106 0.0010 7 6 4.2680 3.5966 0.0078 8 6 4.1349 4.9568 -0.6967 9 6 5.1150 6.0189 -0.1943 10 6 6.3687 5.9806 -1.0296 11 6 7.4561 5.1882 -0.7045 12 6 8.4832 5.2681 -1.5518 13 16 8.1002 6.4059 -2.8373 14 6 6.5169 6.7121 -2.1351 15 6 2.7682 4.9810 0.0020 16 6 3.6590 0.6498 0.0022 17 7 3.6340 -0.6544 -0.0045 18 7 2.3017 -1.0821 -0.0060 19 6 1.8500 -2.4758 -0.0132 20 6 1.6947 -2.9462 -1.4364 21 1 1.9105 -2.2741 -2.2538 22 6 1.2773 -4.2345 -1.6950 23 7 1.0141 -5.0528 -0.6996 24 14 1.0841 -4.8174 -3.4592 25 1 1.4395 -3.7136 -4.3869 26 1 1.9836 -5.9743 -3.6995 27 1 -0.3236 -5.2278 -3.6936 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 -0.8874 -0.5183 30 1 -0.3633 0.8926 -0.5093 31 1 4.6942 3.6661 1.0086 32 1 4.7503 2.8345 -0.6042 33 1 4.0804 4.9007 -1.7839 34 1 4.6554 7.0040 -0.2738 35 1 5.3661 5.8180 0.8472 36 1 7.4704 4.5507 0.1672 37 1 9.4101 4.7214 -1.4600 38 1 5.7779 7.3891 -2.5374 39 1 1.9725 5.3984 -0.6149 40 1 2.7992 5.4151 1.0013 41 1 4.5449 1.2676 0.0046 42 1 2.5849 -3.0985 0.4971 43 1 0.8916 -2.5498 0.5006 44 1 0.7207 -5.9593 -0.8815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899041994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:02 Heat of formation + Delta-G solvation = 103.883762 kcal Electronic energy + Delta-G solvation = -26676.635752 eV Core-core repulsion = 22916.524965 eV Total energy + Delta-G solvation = -3760.110787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92758 -40.14808 -38.44874 -37.24484 -33.90066 -32.37990 -31.94623 -31.11005 -29.59247 -27.84713 -26.88610 -26.21706 -25.99560 -23.63059 -23.22159 -21.80426 -20.47729 -19.56694 -19.02832 -18.47455 -17.90124 -16.91778 -16.67104 -16.02053 -15.82649 -15.30163 -15.07983 -14.64491 -14.51954 -14.06362 -13.69899 -13.53355 -13.35033 -13.17153 -12.89856 -12.77261 -12.69844 -12.53628 -12.43490 -12.17735 -12.05008 -11.76593 -11.75266 -11.56921 -11.45620 -11.09713 -10.98414 -10.91627 -10.50944 -10.36139 -10.14504 -9.90860 -9.39049 -9.08282 -8.72269 -8.71482 -8.59665 -8.53562 -7.88618 -6.33785 -4.41600 0.73237 1.39288 1.71870 2.18716 2.40166 2.81063 2.93822 3.16992 3.24967 3.29658 3.44173 3.89535 4.02727 4.24447 4.46845 4.68950 4.75400 4.84186 4.99465 5.01927 5.06259 5.14860 5.18787 5.28725 5.34408 5.34739 5.37568 5.50501 5.53088 5.58856 5.72836 5.76796 5.85793 6.04846 6.10181 6.12350 6.15940 6.21891 6.52055 6.62365 6.80409 6.90513 7.18177 7.56771 7.77281 7.79565 7.91518 8.38074 8.59381 8.65185 9.25492 10.74417 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.002286 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.069296 B =12244.241552 C =13486.965314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.165 3.835 3 C -0.327 4.327 4 C 0.633 3.367 5 O -0.554 6.554 6 N -0.648 5.648 7 C 0.102 3.898 8 C -0.119 4.119 9 C -0.049 4.049 10 C -0.096 4.096 11 C -0.129 4.129 12 C -0.210 4.210 13 S 0.084 5.916 14 C -0.212 4.212 15 C 0.112 3.888 16 C 0.054 3.946 17 N -0.297 5.297 18 N -0.314 5.314 19 C 0.251 3.749 20 C -0.540 4.540 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.279 1.279 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.142 0.858 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.177 0.823 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.352 24.075 1.093 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.027 3.973 3 C -0.342 4.342 4 C 0.427 3.573 5 O -0.433 6.433 6 N -0.383 5.383 7 C -0.022 4.022 8 C -0.139 4.139 9 C -0.089 4.089 10 C -0.109 4.109 11 C -0.159 4.159 12 C -0.345 4.345 13 S 0.348 5.652 14 C -0.347 4.347 15 C -0.011 4.011 16 C -0.133 4.133 17 N -0.117 5.117 18 N -0.091 5.091 19 C 0.134 3.866 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.734 3.266 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.160 0.840 37 H 0.181 0.819 38 H 0.181 0.819 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.194 0.806 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.959 23.082 -0.158 25.997 hybrid contribution -1.038 -0.360 0.316 1.143 sum 10.921 22.722 0.158 25.211 Atomic orbital electron populations 1.20617 0.86822 1.04869 1.03265 1.21458 0.94954 0.86476 0.94363 1.19568 0.93210 0.92040 1.29372 1.16839 0.83593 0.82808 0.74057 1.90698 1.16071 1.83975 1.52595 1.49201 1.07319 1.06290 1.75539 1.23245 0.82004 0.96579 1.00327 1.23098 0.94766 0.94944 1.01044 1.20243 0.91086 0.99272 0.98310 1.18893 0.97045 0.98164 0.96756 1.20144 0.92816 1.01480 1.01494 1.25625 1.04111 1.05344 0.99425 1.84352 1.11501 1.40707 1.28677 1.25479 1.00757 1.07524 1.00986 1.22918 0.96683 0.81301 1.00241 1.23982 0.96591 0.92517 1.00182 1.77137 0.98636 1.12296 1.23589 1.49372 1.02499 1.08273 1.48915 1.19857 0.96419 0.70914 0.99448 1.21297 1.47332 0.98160 0.91016 0.91603 1.24927 0.94450 0.95966 0.98335 1.69924 1.44575 1.06998 1.31192 0.86272 0.77973 0.78835 0.83476 1.19507 1.20558 1.20527 0.90514 0.89842 0.88655 0.89748 0.90072 0.87616 0.90160 0.90154 0.84032 0.81903 0.81942 0.90555 0.90087 0.80624 0.92493 0.92550 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.35 36.01 0.34 -1.49 16 2 C 0.16 3.48 7.01 -81.60 -0.57 2.91 16 3 C -0.33 -6.32 6.13 -105.07 -0.64 -6.96 16 4 C 0.63 11.36 8.06 -12.52 -0.10 11.26 16 5 O -0.55 -11.31 15.61 5.27 0.08 -11.23 16 6 N -0.65 -8.65 3.69 -186.33 -0.69 -9.34 16 7 C 0.10 0.95 6.71 -8.38 -0.06 0.90 16 8 C -0.12 -0.90 4.01 -89.96 -0.36 -1.26 16 9 C -0.05 -0.27 5.38 -27.88 -0.15 -0.42 16 10 C -0.10 -0.67 5.04 -106.25 -0.54 -1.20 16 11 C -0.13 -0.91 9.98 -41.21 -0.41 -1.33 16 12 C -0.21 -1.50 11.23 29.04 0.33 -1.17 16 13 S 0.08 0.61 23.34 -107.50 -2.51 -1.90 16 14 C -0.21 -1.49 10.98 29.04 0.32 -1.17 16 15 C 0.11 1.06 8.19 -8.50 -0.07 0.99 16 16 C 0.05 0.99 11.14 -16.98 -0.19 0.80 16 17 N -0.30 -6.55 12.50 30.86 0.39 -6.16 16 18 N -0.31 -7.26 3.56 -57.77 -0.21 -7.47 16 19 C 0.25 6.32 5.78 -5.19 -0.03 6.29 16 20 C -0.54 -14.67 9.39 -34.44 -0.32 -15.00 16 21 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.71 13.29 55.43 0.74 -23.97 16 24 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.08 1.60 7.70 -51.93 -0.40 1.20 16 30 H 0.09 1.77 6.49 -51.93 -0.34 1.43 16 31 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 32 H 0.08 0.79 6.12 -51.93 -0.32 0.47 16 33 H 0.11 0.89 8.12 -51.93 -0.42 0.47 16 34 H 0.08 0.37 8.12 -51.93 -0.42 -0.05 16 35 H 0.08 0.38 7.79 -51.93 -0.40 -0.02 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.18 2.46 5.20 -52.49 -0.27 2.19 16 42 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.06 1.41 7.62 -51.93 -0.40 1.01 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -32.53 384.50 -9.86 -42.39 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.88 Total: 1.10 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.56 Total: -5.15 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.23 Total: -46.94 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.51 Total: -1.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.53 -9.86 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899041994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.277 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds