Wall clock time and date at job start Wed Apr 1 2020 03:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38039 * 126.29302 * 2 1 4 4 C 1.47429 * 126.41402 * 0.02562 * 3 2 1 5 5 O 1.21603 * 119.99837 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00109 * 179.97438 * 4 3 2 7 7 C 1.47060 * 136.05778 * 359.62463 * 6 4 3 8 8 C 1.53756 * 87.88972 * 152.96576 * 7 6 4 9 9 C 1.53004 * 114.08862 * 139.77966 * 8 7 6 10 10 C 1.50699 * 109.47056 * 91.56179 * 9 8 7 11 11 C 1.38426 * 122.53949 * 269.73909 * 10 9 8 12 12 C 1.33394 * 114.91850 * 179.75978 * 11 10 9 13 13 S 1.75887 * 109.59446 * 0.47753 * 12 11 10 14 14 C 1.33385 * 122.54042 * 90.02749 * 10 9 8 15 15 C 1.47069 * 136.05603 * 180.02562 * 6 4 3 16 16 C 1.41289 * 107.17227 * 179.90590 * 3 2 1 17 17 N 1.30449 * 108.02172 * 0.36634 * 16 3 2 18 18 N 1.34255 * 126.29135 * 180.31716 * 2 1 3 19 19 C 1.46504 * 125.75251 * 359.97438 * 18 2 1 20 20 C 1.50697 * 109.47391 * 90.00455 * 19 18 2 21 21 H 1.08005 * 119.99554 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00346 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99952 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00030 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46962 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46754 * 120.00254 * 24 22 20 27 27 H 1.48497 * 109.47186 * 240.00169 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.70923 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.71024 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.71004 * 1 2 3 31 31 H 1.09003 * 113.47333 * 267.70124 * 7 6 4 32 32 H 1.08997 * 113.46811 * 38.13615 * 7 6 4 33 33 H 1.09000 * 114.57548 * 272.66323 * 8 7 6 34 34 H 1.08993 * 109.47358 * 211.56291 * 9 8 7 35 35 H 1.09002 * 109.47297 * 331.56775 * 9 8 7 36 36 H 1.07998 * 122.53891 * 359.97438 * 11 10 9 37 37 H 1.08003 * 125.20275 * 180.20416 * 12 11 10 38 38 H 1.08004 * 125.20186 * 0.02562 * 14 10 9 39 39 H 1.08997 * 113.46995 * 321.86091 * 15 6 4 40 40 H 1.08999 * 113.46908 * 92.30069 * 15 6 4 41 41 H 1.07999 * 125.98857 * 180.11575 * 16 3 2 42 42 H 1.09004 * 109.46833 * 209.99868 * 19 18 2 43 43 H 1.08996 * 109.47495 * 329.99908 * 19 18 2 44 44 H 0.97002 * 120.00041 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 0.6996 2.7877 0.0006 6 7 2.8000 3.5106 0.0010 7 6 4.2680 3.5966 0.0078 8 6 4.1349 4.9568 -0.6967 9 6 5.1150 6.0189 -0.1943 10 6 6.3687 5.9806 -1.0296 11 6 7.4561 5.1882 -0.7045 12 6 8.4832 5.2681 -1.5518 13 16 8.1002 6.4059 -2.8373 14 6 6.5169 6.7121 -2.1351 15 6 2.7682 4.9810 0.0020 16 6 3.6590 0.6498 0.0022 17 7 3.6340 -0.6544 -0.0045 18 7 2.3017 -1.0821 -0.0060 19 6 1.8500 -2.4758 -0.0132 20 6 1.6947 -2.9462 -1.4364 21 1 1.9105 -2.2741 -2.2538 22 6 1.2773 -4.2345 -1.6950 23 7 1.0141 -5.0528 -0.6996 24 14 1.0841 -4.8174 -3.4592 25 1 1.4395 -3.7136 -4.3869 26 1 1.9836 -5.9743 -3.6995 27 1 -0.3236 -5.2278 -3.6936 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 -0.8874 -0.5183 30 1 -0.3633 0.8926 -0.5093 31 1 4.6942 3.6661 1.0086 32 1 4.7503 2.8345 -0.6042 33 1 4.0804 4.9007 -1.7839 34 1 4.6554 7.0040 -0.2738 35 1 5.3661 5.8180 0.8472 36 1 7.4704 4.5507 0.1672 37 1 9.4101 4.7214 -1.4600 38 1 5.7779 7.3891 -2.5374 39 1 1.9725 5.3984 -0.6149 40 1 2.7992 5.4151 1.0013 41 1 4.5449 1.2676 0.0046 42 1 2.5849 -3.0985 0.4971 43 1 0.8916 -2.5498 0.5006 44 1 0.7207 -5.9593 -0.8815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899041994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:01 Heat of formation + Delta-G solvation = 85.311687 kcal Electronic energy + Delta-G solvation = -26677.441098 eV Core-core repulsion = 22916.524965 eV Total energy + Delta-G solvation = -3760.916133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.38705 -41.16004 -39.24266 -38.29802 -35.83611 -33.95821 -32.96894 -32.64170 -30.46619 -29.21684 -28.38253 -27.22460 -26.94740 -25.28453 -24.12305 -23.00836 -21.51933 -20.88165 -19.85193 -19.47137 -18.88008 -18.46449 -18.10628 -17.03457 -16.80775 -16.78551 -16.19760 -16.16071 -15.95944 -15.19015 -14.91785 -14.53710 -14.39348 -14.26493 -14.05196 -13.81589 -13.71310 -13.63394 -13.61882 -13.40832 -13.21037 -13.12156 -12.98334 -12.77516 -12.72321 -12.41080 -12.32915 -12.19054 -11.85585 -11.73540 -11.49498 -11.20868 -10.78134 -10.76145 -10.29272 -9.82037 -9.59058 -9.37467 -9.16781 -8.39824 -6.56327 0.22630 0.64162 0.88804 1.21921 1.28769 1.34951 1.37029 1.47981 1.60301 1.87946 2.06828 2.31118 2.50554 2.92142 3.34788 3.56278 3.71277 3.95785 4.01364 4.13580 4.17157 4.24628 4.33776 4.39162 4.54777 4.58211 4.62567 4.66262 4.67107 4.74559 4.78588 4.81375 4.86386 4.96610 5.01750 5.05932 5.08769 5.19845 5.28437 5.44944 5.47305 5.64500 5.66861 5.72741 5.73071 6.01913 6.52819 6.76136 6.79876 7.14931 7.28485 8.68328 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.002286 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.069296 B =12244.241552 C =13486.965314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.144 3.856 3 C -0.327 4.327 4 C 0.627 3.373 5 O -0.589 6.589 6 N -0.652 5.652 7 C 0.094 3.906 8 C -0.096 4.096 9 C -0.040 4.040 10 C -0.102 4.102 11 C -0.136 4.136 12 C -0.221 4.221 13 S 0.061 5.939 14 C -0.219 4.219 15 C 0.108 3.892 16 C 0.075 3.925 17 N -0.334 5.334 18 N -0.337 5.337 19 C 0.267 3.733 20 C -0.556 4.556 21 H 0.050 0.950 22 C 0.025 3.975 23 N -0.916 5.916 24 Si 0.972 3.028 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.268 1.268 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.157 0.843 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.220 0.780 42 H 0.033 0.967 43 H 0.051 0.949 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.317 25.981 1.092 28.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 C -0.342 4.342 4 C 0.420 3.580 5 O -0.472 6.472 6 N -0.386 5.386 7 C -0.028 4.028 8 C -0.115 4.115 9 C -0.080 4.080 10 C -0.114 4.114 11 C -0.167 4.167 12 C -0.356 4.356 13 S 0.325 5.675 14 C -0.354 4.354 15 C -0.014 4.014 16 C -0.112 4.112 17 N -0.154 5.154 18 N -0.114 5.114 19 C 0.149 3.851 20 C -0.594 4.594 21 H 0.068 0.932 22 C -0.177 4.177 23 N -0.554 5.554 24 Si 0.796 3.204 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.193 1.193 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.175 0.825 37 H 0.192 0.808 38 H 0.193 0.807 39 H 0.088 0.912 40 H 0.125 0.875 41 H 0.236 0.764 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.968 25.036 -0.150 28.196 hybrid contribution -1.243 -0.786 0.344 1.510 sum 11.725 24.251 0.193 26.937 Atomic orbital electron populations 1.20578 0.85798 1.04222 1.04098 1.21960 0.95987 0.86659 0.94564 1.19905 0.93350 0.92835 1.28134 1.16646 0.83821 0.83003 0.74576 1.90668 1.17579 1.84440 1.54463 1.49289 1.08752 1.07347 1.73230 1.23635 0.79425 0.97479 1.02248 1.22883 0.93929 0.94454 1.00277 1.20227 0.89783 0.99200 0.98783 1.19075 0.97545 0.97993 0.96807 1.20422 0.92736 1.01598 1.01905 1.25871 1.04897 1.05479 0.99333 1.84435 1.12390 1.41277 1.29398 1.25734 1.00644 1.07919 1.01113 1.23243 0.97542 0.78667 1.01901 1.24644 0.97676 0.91530 0.97318 1.77085 0.98399 1.14266 1.25671 1.49127 1.03326 1.07775 1.51181 1.19387 0.95331 0.72219 0.98185 1.21408 1.48006 0.98503 0.91488 0.93186 1.25725 0.93776 0.95851 1.02350 1.69999 1.44797 1.07465 1.33098 0.85297 0.78522 0.78183 0.78434 1.19840 1.19713 1.19259 0.88962 0.90992 0.88506 0.86823 0.90323 0.88499 0.88581 0.88402 0.82505 0.80800 0.80676 0.91235 0.87522 0.76396 0.94902 0.93110 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.41 9.35 71.24 0.67 -2.74 16 2 C 0.14 6.19 7.01 42.14 0.30 6.49 16 3 C -0.33 -12.48 6.13 -20.15 -0.12 -12.60 16 4 C 0.63 21.82 8.06 86.66 0.70 22.52 16 5 O -0.59 -23.86 15.61 -4.04 -0.06 -23.92 16 6 N -0.65 -15.80 3.69 -861.68 -3.18 -18.97 16 7 C 0.09 1.41 6.71 83.27 0.56 1.97 16 8 C -0.10 -1.11 4.01 -10.36 -0.04 -1.15 16 9 C -0.04 -0.28 5.38 29.85 0.16 -0.12 16 10 C -0.10 -1.10 5.04 -20.92 -0.11 -1.21 16 11 C -0.14 -1.55 9.98 21.22 0.21 -1.34 16 12 C -0.22 -2.75 11.23 66.72 0.75 -2.00 16 13 S 0.06 0.82 23.34 -56.49 -1.32 -0.50 16 14 C -0.22 -2.59 10.98 66.72 0.73 -1.86 16 15 C 0.11 1.71 8.19 83.18 0.68 2.39 16 16 C 0.07 2.64 11.14 85.65 0.95 3.60 16 17 N -0.33 -14.85 12.50 -56.28 -0.70 -15.56 16 18 N -0.34 -16.03 3.56 -336.70 -1.20 -17.23 16 19 C 0.27 14.03 5.78 85.63 0.50 14.53 16 20 C -0.56 -31.09 9.39 25.60 0.24 -30.85 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 22 C 0.02 1.33 5.46 84.65 0.46 1.80 16 23 N -0.92 -51.49 13.29 21.45 0.28 -51.21 16 24 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.07 2.88 7.70 -2.39 -0.02 2.86 16 30 H 0.10 3.66 6.49 -2.38 -0.02 3.65 16 31 H 0.11 1.13 7.87 -2.39 -0.02 1.11 16 32 H 0.08 1.25 6.12 -2.39 -0.01 1.23 16 33 H 0.10 1.36 8.12 -2.39 -0.02 1.34 16 34 H 0.10 0.45 8.12 -2.39 -0.02 0.43 16 35 H 0.10 0.41 7.79 -2.39 -0.02 0.39 16 36 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 1.21 8.10 -2.39 -0.02 1.19 16 41 H 0.22 5.46 5.20 -2.91 -0.02 5.45 16 42 H 0.03 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.05 2.66 7.62 -2.39 -0.02 2.65 16 44 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -72.15 384.50 3.51 -68.64 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.02 Total: 14.20 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.63 Total: -0.57 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -4.79 Total: -102.97 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.06 Total: -23.92 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -1.32 Total: -0.50 kcal Total: -72.15 3.51 -68.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899041994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.957 kcal (2) G-P(sol) polarization free energy of solvation -72.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds