Wall clock time and date at job start Wed Apr 1 2020 03:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.47338 * 2 1 4 4 C 1.53001 * 109.47213 * 240.00104 * 2 1 3 5 5 C 1.53004 * 109.46860 * 59.99908 * 4 2 1 6 6 C 1.50699 * 109.46630 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00510 * 269.72575 * 6 5 4 8 8 C 1.38230 * 120.00326 * 179.76759 * 7 6 5 9 9 C 1.38240 * 120.00055 * 0.51144 * 8 7 6 10 10 C 1.38234 * 119.99686 * 359.74196 * 9 8 7 11 11 C 1.38234 * 120.00086 * 0.02562 * 10 9 8 12 12 C 1.50704 * 109.47002 * 120.00025 * 2 1 3 13 13 O 1.21277 * 119.99878 * 95.00346 * 12 2 1 14 14 N 1.34776 * 119.99934 * 275.00050 * 12 2 1 15 15 C 1.46501 * 119.99737 * 180.02562 * 14 12 2 16 16 H 1.08991 * 109.46912 * 325.00002 * 15 14 12 17 17 C 1.50699 * 109.47042 * 204.99762 * 15 14 12 18 18 H 1.07999 * 120.00310 * 274.94847 * 17 15 14 19 19 C 1.37881 * 119.99987 * 94.94137 * 17 15 14 20 20 N 1.31513 * 120.00093 * 184.88176 * 19 17 15 21 21 Si 1.86796 * 119.99720 * 4.88486 * 19 17 15 22 22 H 1.48495 * 109.47295 * 84.80998 * 21 19 17 23 23 H 1.48508 * 109.46986 * 204.80603 * 21 19 17 24 24 H 1.48501 * 109.47250 * 324.80411 * 21 19 17 25 25 C 1.52998 * 109.46978 * 84.99897 * 15 14 12 26 26 F 1.39899 * 109.47358 * 54.94017 * 25 15 14 27 27 F 1.39895 * 109.47391 * 294.93213 * 25 15 14 28 28 F 1.39903 * 109.47227 * 174.93471 * 25 15 14 29 29 H 1.08995 * 109.46642 * 300.00234 * 1 2 3 30 30 H 1.09002 * 109.46751 * 60.00043 * 1 2 3 31 31 H 1.09000 * 109.46666 * 179.97438 * 1 2 3 32 32 H 0.96698 * 114.00568 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47316 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.46790 * 300.00177 * 4 2 1 35 35 H 1.08996 * 109.47081 * 300.00052 * 5 4 2 36 36 H 1.08990 * 109.47164 * 60.00505 * 5 4 2 37 37 H 1.08002 * 119.99517 * 0.02562 * 7 6 5 38 38 H 1.08004 * 120.00352 * 180.22653 * 8 7 6 39 39 H 1.07994 * 120.00163 * 179.72622 * 9 8 7 40 40 H 1.08001 * 119.99754 * 179.97438 * 10 9 8 41 41 H 1.07998 * 119.99783 * 179.97438 * 11 10 9 42 42 H 0.97002 * 119.99901 * 359.97438 * 14 12 2 43 43 H 0.96997 * 120.00296 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5300 0.0001 -2.4985 6 6 2.0329 -0.7100 -3.7289 7 6 3.2381 -0.3403 -4.2963 8 6 3.7016 -0.9949 -5.4221 9 6 2.9550 -2.0121 -5.9868 10 6 1.7474 -2.3782 -5.4225 11 6 1.2861 -1.7268 -4.2939 12 6 2.0324 -0.7104 1.2305 13 8 2.3209 -1.8871 1.1760 14 7 2.1611 -0.0381 2.3915 15 6 2.6499 -0.7286 3.5875 16 1 2.2870 -1.7563 3.5874 17 6 2.1476 -0.0184 4.8181 18 1 2.6902 0.8280 5.2124 19 6 0.9952 -0.4493 5.4406 20 7 0.5041 0.2270 6.4560 21 14 0.1317 -1.9936 4.8417 22 1 0.7535 -3.1850 5.4734 23 1 -1.3056 -1.9316 5.2101 24 1 0.2605 -2.0920 3.3656 25 6 4.1799 -0.7280 3.5871 26 9 4.6458 0.5860 3.4708 27 9 4.6463 -1.4856 2.5074 28 9 4.6468 -1.2840 4.7830 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.9704 1.4236 0.0004 33 1 3.1301 -0.7208 -1.2495 34 1 1.6767 -1.7489 -1.2492 35 1 0.4401 0.0001 -2.4984 36 1 1.8934 1.0276 -2.4985 37 1 3.8194 0.4571 -3.8575 38 1 4.6449 -0.7086 -5.8633 39 1 3.3150 -2.5205 -6.8690 40 1 1.1639 -3.1726 -5.8640 41 1 0.3424 -2.0127 -3.8533 42 1 1.9307 0.9032 2.4349 43 1 -0.3064 -0.0763 6.8942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:18 Heat of formation + Delta-G solvation = -235.665860 kcal Electronic energy + Delta-G solvation = -31322.615899 eV Core-core repulsion = 26530.878773 eV Total energy + Delta-G solvation = -4791.737126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.11205 -46.63965 -46.58662 -40.06210 -39.26236 -37.03762 -34.95466 -33.98939 -32.55348 -31.42017 -31.03534 -29.32201 -28.16326 -25.25055 -24.99679 -22.83715 -22.71641 -21.26058 -20.58195 -19.75383 -18.53070 -17.59357 -17.43516 -16.92309 -16.81437 -16.53642 -15.91819 -15.63683 -15.28469 -15.05451 -14.86722 -14.43102 -13.81413 -13.62191 -13.54066 -13.48776 -13.26758 -13.22590 -13.07056 -12.92902 -12.86103 -12.80522 -12.74415 -12.59469 -12.41796 -12.23102 -11.88961 -11.74641 -11.43985 -11.31745 -11.23005 -11.18184 -10.80330 -10.74821 -10.40969 -10.19248 -9.85803 -9.20945 -9.07466 -8.98072 -8.76271 -8.46513 -6.56724 -4.71571 1.20576 1.24770 2.97043 3.06851 3.16540 3.24019 3.48294 3.66604 3.87767 4.06021 4.20208 4.55614 4.67103 4.75376 4.83270 4.83735 4.94428 4.99878 5.08984 5.12787 5.21798 5.23751 5.34808 5.40174 5.47084 5.51952 5.63923 5.79115 5.82687 5.86202 5.93237 5.96983 6.19870 6.24224 6.25957 6.31693 6.35308 6.52921 6.85059 6.86181 7.08140 7.49686 7.82223 8.26762 8.48562 8.75301 8.98968 10.51822 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.003174 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.737511 B = 8819.985315 C = 9539.189243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.119 3.881 3 O -0.548 6.548 4 C -0.122 4.122 5 C -0.079 4.079 6 C -0.076 4.076 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.129 4.129 10 C -0.120 4.120 11 C -0.118 4.118 12 C 0.474 3.526 13 O -0.540 6.540 14 N -0.701 5.701 15 C 0.201 3.799 16 H 0.089 0.911 17 C -0.537 4.537 18 H 0.094 0.906 19 C 0.100 3.900 20 N -0.858 5.858 21 Si 0.867 3.133 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.255 1.255 25 C 0.437 3.563 26 F -0.192 7.192 27 F -0.197 7.197 28 F -0.181 7.181 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.380 0.620 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.406 0.594 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 -0.373 -19.375 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.075 3.925 3 O -0.354 6.354 4 C -0.160 4.160 5 C -0.116 4.116 6 C -0.076 4.076 7 C -0.136 4.136 8 C -0.138 4.138 9 C -0.148 4.148 10 C -0.138 4.138 11 C -0.136 4.136 12 C 0.259 3.741 13 O -0.418 6.418 14 N -0.353 5.353 15 C 0.098 3.902 16 H 0.106 0.894 17 C -0.575 4.575 18 H 0.112 0.888 19 C -0.110 4.110 20 N -0.491 5.491 21 Si 0.692 3.308 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.179 1.179 25 C 0.382 3.618 26 F -0.174 7.174 27 F -0.178 7.178 28 F -0.163 7.163 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.228 0.772 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.244 0.756 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.652 -1.054 -19.231 19.271 hybrid contribution 0.346 -0.531 -0.121 0.645 sum 0.998 -1.585 -19.352 19.443 Atomic orbital electron populations 1.21782 0.90912 1.03130 1.03843 1.21459 0.96501 0.82365 0.92167 1.86540 1.27130 1.24800 1.96885 1.21999 1.01503 1.00540 0.92007 1.20641 1.01171 0.99183 0.90615 1.19977 0.94795 0.96341 0.96457 1.21091 0.95937 1.00283 0.96252 1.21144 0.99716 0.96497 0.96406 1.21123 0.95345 0.98008 1.00276 1.21143 0.96464 0.99778 0.96370 1.21097 1.00098 0.96164 0.96211 1.21538 0.78551 0.88184 0.85861 1.90678 1.49922 1.15894 1.85288 1.47436 1.64220 1.15024 1.08634 1.20027 0.84135 0.98689 0.87341 0.89359 1.20723 1.11402 1.17892 1.07455 0.88828 1.24992 0.95790 0.96483 0.93747 1.69852 1.20995 1.37879 1.20348 0.86947 0.79367 0.83530 0.80952 1.19034 1.20419 1.17879 1.21734 0.94824 0.72675 0.72607 1.93069 1.90974 1.37556 1.95758 1.93139 1.91202 1.76772 1.56724 1.93111 1.90412 1.85510 1.47234 0.90969 0.90668 0.90717 0.77236 0.91212 0.89729 0.90545 0.90156 0.86069 0.86231 0.86365 0.86233 0.86069 0.75648 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.47 37.16 0.31 -1.50 16 2 C 0.12 1.68 1.00 -91.77 -0.09 1.59 16 3 O -0.55 -6.92 11.62 -35.23 -0.41 -7.33 16 4 C -0.12 -1.55 3.97 -26.73 -0.11 -1.66 16 5 C -0.08 -0.82 4.85 -27.88 -0.14 -0.95 16 6 C -0.08 -0.81 5.13 -104.62 -0.54 -1.35 16 7 C -0.12 -1.20 9.70 -39.59 -0.38 -1.58 16 8 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 9 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 10 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 11 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 12 C 0.47 8.86 6.34 -10.98 -0.07 8.79 16 13 O -0.54 -11.80 14.67 5.56 0.08 -11.72 16 14 N -0.70 -13.87 4.82 -54.94 -0.26 -14.13 16 15 C 0.20 4.60 1.71 -69.08 -0.12 4.48 16 16 H 0.09 2.15 4.73 -51.93 -0.25 1.91 16 17 C -0.54 -13.64 8.52 -34.44 -0.29 -13.93 16 18 H 0.09 2.57 8.00 -52.49 -0.42 2.15 16 19 C 0.10 2.60 5.47 -17.82 -0.10 2.50 16 20 N -0.86 -23.44 13.96 55.43 0.77 -22.66 16 21 Si 0.87 19.95 26.99 -169.99 -4.59 15.37 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.25 -5.90 6.82 56.52 0.39 -5.51 16 25 C 0.44 9.64 2.83 37.16 0.11 9.75 16 26 F -0.19 -4.04 16.93 2.25 0.04 -4.00 16 27 F -0.20 -4.27 15.83 2.25 0.04 -4.24 16 28 F -0.18 -4.11 16.89 2.25 0.04 -4.07 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.81 6.43 -51.93 -0.33 0.47 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.38 3.91 9.04 45.56 0.41 4.32 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 35 H 0.08 0.74 6.37 -51.93 -0.33 0.41 16 36 H 0.08 0.80 7.62 -51.93 -0.40 0.40 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.41 7.52 8.03 -40.82 -0.33 7.19 16 43 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -29.50 371.70 -6.27 -35.77 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -4.58 Total: 11.51 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.99 Total: -0.11 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.51 Total: -36.79 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.33 Total: -19.04 kcal Atomic # 9 Polarization: -12.42 SS G_CDS: 0.11 Total: -12.31 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.59 Total: 15.37 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.50 -6.27 -35.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.895 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds