Wall clock time and date at job start Wed Apr 1 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.47338 * 2 1 4 4 C 1.53001 * 109.47213 * 240.00104 * 2 1 3 5 5 C 1.53004 * 109.46860 * 59.99908 * 4 2 1 6 6 C 1.50699 * 109.46630 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00510 * 269.72575 * 6 5 4 8 8 C 1.38230 * 120.00326 * 179.76759 * 7 6 5 9 9 C 1.38240 * 120.00055 * 0.51144 * 8 7 6 10 10 C 1.38234 * 119.99686 * 359.74196 * 9 8 7 11 11 C 1.38234 * 120.00086 * 0.02562 * 10 9 8 12 12 C 1.50704 * 109.47002 * 120.00025 * 2 1 3 13 13 O 1.21277 * 119.99878 * 95.00346 * 12 2 1 14 14 N 1.34776 * 119.99934 * 275.00050 * 12 2 1 15 15 C 1.46501 * 119.99737 * 180.02562 * 14 12 2 16 16 H 1.08991 * 109.46912 * 325.00002 * 15 14 12 17 17 C 1.50699 * 109.47042 * 204.99762 * 15 14 12 18 18 H 1.07999 * 120.00310 * 274.94847 * 17 15 14 19 19 C 1.37881 * 119.99987 * 94.94137 * 17 15 14 20 20 N 1.31513 * 120.00093 * 184.88176 * 19 17 15 21 21 Si 1.86796 * 119.99720 * 4.88486 * 19 17 15 22 22 H 1.48495 * 109.47295 * 84.80998 * 21 19 17 23 23 H 1.48508 * 109.46986 * 204.80603 * 21 19 17 24 24 H 1.48501 * 109.47250 * 324.80411 * 21 19 17 25 25 C 1.52998 * 109.46978 * 84.99897 * 15 14 12 26 26 F 1.39899 * 109.47358 * 54.94017 * 25 15 14 27 27 F 1.39895 * 109.47391 * 294.93213 * 25 15 14 28 28 F 1.39903 * 109.47227 * 174.93471 * 25 15 14 29 29 H 1.08995 * 109.46642 * 300.00234 * 1 2 3 30 30 H 1.09002 * 109.46751 * 60.00043 * 1 2 3 31 31 H 1.09000 * 109.46666 * 179.97438 * 1 2 3 32 32 H 0.96698 * 114.00568 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47316 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.46790 * 300.00177 * 4 2 1 35 35 H 1.08996 * 109.47081 * 300.00052 * 5 4 2 36 36 H 1.08990 * 109.47164 * 60.00505 * 5 4 2 37 37 H 1.08002 * 119.99517 * 0.02562 * 7 6 5 38 38 H 1.08004 * 120.00352 * 180.22653 * 8 7 6 39 39 H 1.07994 * 120.00163 * 179.72622 * 9 8 7 40 40 H 1.08001 * 119.99754 * 179.97438 * 10 9 8 41 41 H 1.07998 * 119.99783 * 179.97438 * 11 10 9 42 42 H 0.97002 * 119.99901 * 359.97438 * 14 12 2 43 43 H 0.96997 * 120.00296 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5300 0.0001 -2.4985 6 6 2.0329 -0.7100 -3.7289 7 6 3.2381 -0.3403 -4.2963 8 6 3.7016 -0.9949 -5.4221 9 6 2.9550 -2.0121 -5.9868 10 6 1.7474 -2.3782 -5.4225 11 6 1.2861 -1.7268 -4.2939 12 6 2.0324 -0.7104 1.2305 13 8 2.3209 -1.8871 1.1760 14 7 2.1611 -0.0381 2.3915 15 6 2.6499 -0.7286 3.5875 16 1 2.2870 -1.7563 3.5874 17 6 2.1476 -0.0184 4.8181 18 1 2.6902 0.8280 5.2124 19 6 0.9952 -0.4493 5.4406 20 7 0.5041 0.2270 6.4560 21 14 0.1317 -1.9936 4.8417 22 1 0.7535 -3.1850 5.4734 23 1 -1.3056 -1.9316 5.2101 24 1 0.2605 -2.0920 3.3656 25 6 4.1799 -0.7280 3.5871 26 9 4.6458 0.5860 3.4708 27 9 4.6463 -1.4856 2.5074 28 9 4.6468 -1.2840 4.7830 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.9704 1.4236 0.0004 33 1 3.1301 -0.7208 -1.2495 34 1 1.6767 -1.7489 -1.2492 35 1 0.4401 0.0001 -2.4984 36 1 1.8934 1.0276 -2.4985 37 1 3.8194 0.4571 -3.8575 38 1 4.6449 -0.7086 -5.8633 39 1 3.3150 -2.5205 -6.8690 40 1 1.1639 -3.1726 -5.8640 41 1 0.3424 -2.0127 -3.8533 42 1 1.9307 0.9032 2.4349 43 1 -0.3064 -0.0763 6.8942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:17 Heat of formation + Delta-G solvation = -254.346875 kcal Electronic energy + Delta-G solvation = -31323.425968 eV Core-core repulsion = 26530.878773 eV Total energy + Delta-G solvation = -4792.547196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.91242 -48.42308 -48.39755 -41.37726 -40.09485 -38.29046 -36.68147 -34.97033 -34.41806 -32.42594 -31.72952 -30.98616 -29.14700 -26.93108 -26.28458 -24.14021 -23.42141 -22.69037 -21.66837 -21.10180 -20.18342 -19.38095 -18.98950 -18.55799 -18.41134 -17.66961 -17.22353 -16.71256 -16.52355 -16.27983 -16.00315 -15.67960 -15.35625 -15.31764 -14.98447 -14.94491 -14.85642 -14.60598 -14.55941 -14.50470 -14.25675 -14.12424 -13.91961 -13.77446 -13.65760 -13.46210 -13.23408 -13.05547 -12.76789 -12.62055 -12.53280 -12.10097 -12.01317 -11.98679 -11.88227 -11.64404 -11.42173 -11.05780 -10.52964 -10.16243 -9.78649 -9.54757 -8.57347 -6.75521 0.47884 0.53527 1.23144 1.29684 1.38291 1.45227 1.92217 2.12253 2.14496 2.86189 2.92474 3.15074 3.23003 3.30680 3.42278 3.60288 3.80516 3.88107 4.04288 4.14956 4.22204 4.33380 4.35972 4.38374 4.48175 4.68083 4.69937 4.70408 4.82323 4.88307 4.91866 4.97751 5.15695 5.17200 5.25691 5.34510 5.41946 5.61332 5.65786 5.77959 5.84639 6.17152 6.40463 6.45964 6.74424 6.97225 7.21273 8.55260 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.003174 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.737511 B = 8819.985315 C = 9539.189243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 O -0.544 6.544 4 C -0.113 4.113 5 C -0.068 4.068 6 C -0.092 4.092 7 C -0.131 4.131 8 C -0.129 4.129 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.132 4.132 12 C 0.471 3.529 13 O -0.571 6.571 14 N -0.700 5.700 15 C 0.208 3.792 16 H 0.076 0.924 17 C -0.539 4.539 18 H 0.066 0.934 19 C 0.063 3.937 20 N -0.897 5.897 21 Si 0.919 3.081 22 H -0.265 1.265 23 H -0.267 1.267 24 H -0.258 1.258 25 C 0.440 3.560 26 F -0.185 7.185 27 F -0.193 7.193 28 F -0.186 7.186 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.391 0.609 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.414 0.586 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 -0.518 -21.623 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.089 3.911 3 O -0.351 6.351 4 C -0.151 4.151 5 C -0.105 4.105 6 C -0.092 4.092 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.150 4.150 12 C 0.258 3.742 13 O -0.450 6.450 14 N -0.352 5.352 15 C 0.103 3.897 16 H 0.094 0.906 17 C -0.576 4.576 18 H 0.084 0.916 19 C -0.144 4.144 20 N -0.531 5.531 21 Si 0.742 3.258 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.182 1.182 25 C 0.384 3.616 26 F -0.167 7.167 27 F -0.174 7.174 28 F -0.167 7.167 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.241 0.759 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.252 0.748 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.298 -1.176 -21.494 21.528 hybrid contribution 0.562 -0.464 0.514 0.892 sum 0.861 -1.640 -20.980 21.061 Atomic orbital electron populations 1.21851 0.89793 1.03425 1.04797 1.21339 0.97174 0.82565 0.90049 1.86541 1.28367 1.23561 1.96637 1.21903 1.01003 0.99838 0.92373 1.20548 1.01644 0.99064 0.89231 1.20077 0.95329 0.96930 0.96832 1.21326 0.96056 1.00818 0.96739 1.21452 1.00533 0.96461 0.96273 1.21461 0.95196 0.97891 1.00852 1.21447 0.96888 1.00157 0.96234 1.21332 1.00636 0.96341 0.96732 1.22404 0.77388 0.87910 0.86541 1.90662 1.51056 1.17468 1.85839 1.47066 1.64501 1.15318 1.08337 1.19738 0.84533 0.97865 0.87560 0.90587 1.20663 1.11194 1.17166 1.08623 0.91620 1.25555 0.96422 0.98619 0.93798 1.69921 1.21967 1.39512 1.21736 0.86148 0.79030 0.80533 0.80109 1.18958 1.19212 1.18219 1.21588 0.94503 0.72967 0.72567 1.93080 1.90840 1.37041 1.95713 1.93146 1.91098 1.76714 1.56465 1.93101 1.90441 1.85620 1.47580 0.91923 0.87838 0.90816 0.75902 0.91923 0.91187 0.89583 0.89432 0.85187 0.84453 0.84328 0.84479 0.85274 0.74781 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.47 71.98 0.61 -2.77 16 2 C 0.13 3.51 1.00 -11.54 -0.01 3.50 16 3 O -0.54 -12.48 11.62 -148.98 -1.73 -14.21 16 4 C -0.11 -2.69 3.97 30.60 0.12 -2.57 16 5 C -0.07 -1.26 4.85 29.85 0.14 -1.11 16 6 C -0.09 -1.81 5.13 -19.87 -0.10 -1.91 16 7 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 8 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 9 C -0.14 -2.22 10.05 22.27 0.22 -2.00 16 10 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 11 C -0.13 -2.52 9.70 22.27 0.22 -2.30 16 12 C 0.47 17.11 6.34 87.66 0.56 17.66 16 13 O -0.57 -24.53 14.67 -3.02 -0.04 -24.58 16 14 N -0.70 -27.19 4.82 -446.11 -2.15 -29.34 16 15 C 0.21 9.46 1.71 44.24 0.08 9.54 16 16 H 0.08 3.68 4.73 -2.39 -0.01 3.67 16 17 C -0.54 -27.63 8.52 25.60 0.22 -27.41 16 18 H 0.07 3.69 8.00 -2.91 -0.02 3.67 16 19 C 0.06 3.27 5.47 84.66 0.46 3.73 16 20 N -0.90 -49.47 13.96 21.45 0.30 -49.17 16 21 Si 0.92 41.03 26.99 68.60 1.85 42.88 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.26 -11.56 6.82 99.48 0.68 -10.88 16 25 C 0.44 19.22 2.83 71.98 0.20 19.42 16 26 F -0.19 -7.68 16.93 44.97 0.76 -6.92 16 27 F -0.19 -8.22 15.83 44.97 0.71 -7.51 16 28 F -0.19 -8.41 16.89 44.97 0.76 -7.65 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 1.89 6.43 -2.39 -0.02 1.87 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.39 7.17 9.04 -74.06 -0.67 6.50 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.89 7.87 -2.39 -0.02 1.87 16 35 H 0.09 1.42 6.37 -2.39 -0.02 1.41 16 36 H 0.09 1.50 7.62 -2.39 -0.02 1.48 16 37 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.41 14.99 8.03 -92.71 -0.74 14.24 16 43 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -62.59 371.70 3.47 -59.12 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.37 Total: 29.83 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 3.38 Total: 7.56 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -1.85 Total: -78.51 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.78 Total: -38.79 kcal Atomic # 9 Polarization: -24.31 SS G_CDS: 2.23 Total: -22.08 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.85 Total: 42.88 kcal Total: -62.59 3.47 -59.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.230 kcal (2) G-P(sol) polarization free energy of solvation -62.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds