Wall clock time and date at job start Wed Apr 1 2020 03:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38237 * 120.00003 * 2 1 4 4 C 1.38234 * 120.00408 * 180.34632 * 3 2 1 5 5 C 1.38236 * 119.99410 * 359.88748 * 4 3 2 6 6 C 1.50707 * 119.99614 * 180.10966 * 5 4 3 7 7 H 1.08997 * 109.46646 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46829 * 59.97847 * 6 5 4 9 9 C 1.52999 * 109.47293 * 299.97900 * 6 5 4 10 10 H 1.09002 * 109.46701 * 62.80220 * 9 6 5 11 11 O 1.42905 * 109.47038 * 302.81032 * 9 6 5 12 12 C 1.50689 * 109.47425 * 182.80549 * 9 6 5 13 13 O 1.21280 * 120.00246 * 288.21407 * 12 9 6 14 14 N 1.34774 * 120.00138 * 108.20442 * 12 9 6 15 15 C 1.46504 * 120.00132 * 175.59820 * 14 12 9 16 16 H 1.09005 * 109.46708 * 35.00905 * 15 14 12 17 17 C 1.50699 * 109.47086 * 155.00208 * 15 14 12 18 18 H 1.08000 * 120.00149 * 122.49447 * 17 15 14 19 19 C 1.37876 * 120.00320 * 302.49901 * 17 15 14 20 20 N 1.31516 * 120.00510 * 182.97100 * 19 17 15 21 21 Si 1.86807 * 119.99785 * 2.96972 * 19 17 15 22 22 H 1.48495 * 109.46901 * 93.70748 * 21 19 17 23 23 H 1.48502 * 109.46827 * 213.70707 * 21 19 17 24 24 H 1.48492 * 109.47051 * 333.70656 * 21 19 17 25 25 C 1.52994 * 109.47416 * 275.00286 * 15 14 12 26 26 F 1.39905 * 109.47024 * 64.94764 * 25 15 14 27 27 F 1.39900 * 109.47280 * 184.94615 * 25 15 14 28 28 F 1.39892 * 109.47422 * 304.94809 * 25 15 14 29 29 C 1.38237 * 120.00446 * 0.09303 * 5 4 3 30 30 C 1.38230 * 120.00246 * 180.27854 * 2 1 3 31 31 H 1.08998 * 109.46819 * 269.72000 * 1 2 3 32 32 H 1.09001 * 109.47547 * 29.72176 * 1 2 3 33 33 H 1.09001 * 109.47111 * 149.72122 * 1 2 3 34 34 H 1.08006 * 119.99913 * 0.28220 * 3 2 1 35 35 H 1.07992 * 119.99935 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.46411 * 178.48359 * 8 6 5 37 37 H 1.08997 * 109.47390 * 298.48562 * 8 6 5 38 38 H 1.09003 * 109.47115 * 58.48802 * 8 6 5 39 39 H 0.96698 * 113.99213 * 299.99436 * 11 9 6 40 40 H 0.97000 * 120.00302 * 355.60489 * 14 12 9 41 41 H 0.96993 * 120.00515 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.00118 * 180.02562 * 29 5 4 43 43 H 1.08003 * 119.99761 * 359.70223 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0072 5 6 4.2716 0.0001 -0.0121 6 6 5.7787 0.0002 -0.0175 7 1 6.1420 -1.0275 -0.0204 8 6 6.2931 0.7194 1.2311 9 6 6.2842 0.7235 -1.2674 10 1 5.9625 1.7646 -1.2397 11 8 5.7506 0.0909 -2.4324 12 6 7.7894 0.6637 -1.3081 13 8 8.4439 1.3244 -0.5297 14 7 8.4083 -0.1242 -2.2096 15 6 9.8696 -0.1097 -2.3141 16 1 10.3032 0.0351 -1.3246 17 6 10.3454 -1.4211 -2.8841 18 1 10.9363 -1.4344 -3.7880 19 6 10.0264 -2.6040 -2.2516 20 7 10.4902 -3.7437 -2.7157 21 14 8.9353 -2.5877 -0.7354 22 1 7.5228 -2.8028 -1.1398 23 1 9.3561 -3.6712 0.1888 24 1 9.0598 -1.2763 -0.0501 25 6 10.3038 1.0335 -3.2335 26 9 9.9614 2.2577 -2.6491 27 9 11.6888 0.9787 -3.4236 28 9 9.6584 0.9096 -4.4685 29 6 3.5805 -1.1971 -0.0117 30 6 2.1982 -1.1971 -0.0058 31 1 -0.3633 -0.0050 1.0276 32 1 -0.3634 0.8925 -0.5095 33 1 -0.3633 -0.8875 -0.5182 34 1 1.6581 2.1325 0.0046 35 1 4.1204 2.1326 -0.0068 36 1 7.3828 0.6959 1.2408 37 1 5.9520 1.7546 1.2206 38 1 5.9109 0.2200 2.1214 39 1 5.9969 -0.8398 -2.5221 40 1 7.8864 -0.7008 -2.7892 41 1 10.2661 -4.5759 -2.2706 42 1 4.1205 -2.1324 -0.0151 43 1 1.6582 -2.1324 -0.0055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928813120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:22 Heat of formation + Delta-G solvation = -227.982753 kcal Electronic energy + Delta-G solvation = -31837.768661 eV Core-core repulsion = 27046.364700 eV Total energy + Delta-G solvation = -4791.403961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.14948 -46.67020 -46.62549 -40.35294 -39.21861 -36.84869 -35.28985 -34.34137 -32.49948 -31.48342 -30.96313 -29.38015 -26.80215 -26.54223 -25.09975 -23.15062 -22.58483 -21.52428 -20.48036 -19.93865 -18.62508 -17.74362 -17.62632 -16.98578 -16.52388 -16.50829 -15.92444 -15.59240 -15.21941 -14.85532 -14.57797 -14.42634 -13.96706 -13.89881 -13.58147 -13.55394 -13.48681 -13.33113 -13.10378 -12.94729 -12.83220 -12.80232 -12.72560 -12.65238 -12.51662 -12.33923 -11.89978 -11.82923 -11.70445 -11.49457 -11.24556 -10.99832 -10.94812 -10.72049 -10.47411 -10.30788 -9.94017 -9.29854 -9.02234 -8.97482 -8.56383 -8.50296 -6.56977 -4.70458 1.25119 1.35016 2.79306 2.90905 3.15224 3.19387 3.40215 3.69807 3.82881 4.01316 4.27508 4.52773 4.60710 4.76741 4.81531 4.86200 4.93112 4.93918 5.02211 5.06745 5.14850 5.21442 5.33543 5.36716 5.38426 5.41848 5.56948 5.62020 5.69126 5.85496 5.95544 6.01434 6.04448 6.28581 6.33788 6.40964 6.50253 6.59277 6.79271 6.92673 6.94463 7.37759 7.78035 8.10460 8.44024 8.59185 8.95363 10.51502 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.003737 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.206758 B = 7491.340059 C = 8368.821301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.105 4.105 5 C -0.064 4.064 6 C -0.080 4.080 7 H 0.081 0.919 8 C -0.147 4.147 9 C 0.100 3.900 10 H 0.130 0.870 11 O -0.545 6.545 12 C 0.476 3.524 13 O -0.527 6.527 14 N -0.712 5.712 15 C 0.207 3.793 16 H 0.092 0.908 17 C -0.539 4.539 18 H 0.097 0.903 19 C 0.093 3.907 20 N -0.862 5.862 21 Si 0.876 3.124 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.252 1.252 25 C 0.442 3.558 26 F -0.195 7.195 27 F -0.184 7.184 28 F -0.188 7.188 29 C -0.110 4.110 30 C -0.118 4.118 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.377 0.623 40 H 0.400 0.600 41 H 0.275 0.725 42 H 0.120 0.880 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.899 5.279 5.627 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.136 4.136 4 C -0.123 4.123 5 C -0.064 4.064 6 C -0.099 4.099 7 H 0.100 0.900 8 C -0.205 4.205 9 C 0.037 3.963 10 H 0.147 0.853 11 O -0.350 6.350 12 C 0.261 3.739 13 O -0.404 6.404 14 N -0.367 5.367 15 C 0.103 3.897 16 H 0.110 0.890 17 C -0.577 4.577 18 H 0.115 0.885 19 C -0.116 4.116 20 N -0.495 5.495 21 Si 0.703 3.297 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.176 1.176 25 C 0.386 3.614 26 F -0.177 7.177 27 F -0.165 7.165 28 F -0.169 7.169 29 C -0.128 4.128 30 C -0.136 4.136 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.225 0.775 40 H 0.237 0.763 41 H 0.085 0.915 42 H 0.138 0.862 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.646 6.170 6.060 17.877 hybrid contribution -0.421 -0.840 0.315 0.991 sum -16.067 5.330 6.375 18.088 Atomic orbital electron populations 1.20769 0.91441 1.02646 1.02069 1.19880 0.95897 0.93278 1.00413 1.20968 0.94049 0.97409 1.01202 1.20934 0.94034 0.97590 0.99701 1.19571 0.94074 0.93429 0.99333 1.20781 0.92029 1.01181 0.95947 0.90028 1.21902 1.03273 1.00028 0.95249 1.22352 0.89158 0.99350 0.85401 0.85298 1.86634 1.76058 1.29071 1.43278 1.21509 0.90994 0.80016 0.81352 1.90667 1.66945 1.43200 1.39617 1.47470 1.08768 1.42529 1.37927 1.20322 0.79504 0.93103 0.96725 0.89005 1.20839 1.35809 0.87021 1.14035 0.88524 1.24935 0.94940 0.94987 0.96765 1.69859 1.41704 0.98248 1.39717 0.86873 0.80487 0.79181 0.83140 1.20055 1.21519 1.17584 1.21481 0.74840 0.84085 0.80982 1.93139 1.92101 1.48305 1.84122 1.93111 1.31345 1.96512 1.95555 1.93094 1.81638 1.96041 1.46144 1.21040 0.94203 0.97465 1.00139 1.20961 0.94012 0.97442 1.01189 0.91423 0.91671 0.91673 0.86258 0.86131 0.90040 0.92043 0.92434 0.77524 0.76259 0.91531 0.86226 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.00 0.36 -0.48 16 2 C -0.09 -0.97 5.88 -104.63 -0.62 -1.59 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 4 C -0.10 -1.22 8.76 -39.58 -0.35 -1.57 16 5 C -0.06 -0.81 4.36 -104.62 -0.46 -1.26 16 6 C -0.08 -1.10 2.32 -91.77 -0.21 -1.31 16 7 H 0.08 1.18 7.77 -51.93 -0.40 0.77 16 8 C -0.15 -2.00 8.52 37.16 0.32 -1.68 16 9 C 0.10 1.49 2.84 -27.89 -0.08 1.41 16 10 H 0.13 1.83 7.49 -51.93 -0.39 1.44 16 11 O -0.55 -7.89 12.36 -35.23 -0.44 -8.33 16 12 C 0.48 8.84 5.24 -10.99 -0.06 8.78 16 13 O -0.53 -11.05 13.70 5.56 0.08 -10.98 16 14 N -0.71 -13.91 2.50 -54.94 -0.14 -14.05 16 15 C 0.21 4.60 1.41 -69.08 -0.10 4.51 16 16 H 0.09 2.16 6.87 -51.93 -0.36 1.80 16 17 C -0.54 -13.48 8.75 -34.44 -0.30 -13.78 16 18 H 0.10 2.66 7.84 -52.49 -0.41 2.25 16 19 C 0.09 2.33 5.47 -17.82 -0.10 2.23 16 20 N -0.86 -23.22 13.96 55.43 0.77 -22.44 16 21 Si 0.88 18.83 25.29 -169.99 -4.30 14.53 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.25 -5.50 5.75 56.52 0.32 -5.18 16 25 C 0.44 9.60 2.80 37.15 0.10 9.71 16 26 F -0.20 -4.19 16.01 2.25 0.04 -4.16 16 27 F -0.18 -4.05 16.78 2.25 0.04 -4.01 16 28 F -0.19 -4.02 16.97 2.25 0.04 -3.99 16 29 C -0.11 -1.32 9.67 -39.58 -0.38 -1.71 16 30 C -0.12 -1.27 9.70 -39.59 -0.38 -1.66 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.12 1.29 7.15 -52.49 -0.38 0.91 16 36 H 0.08 1.31 6.11 -51.93 -0.32 0.99 16 37 H 0.06 0.76 7.44 -51.93 -0.39 0.37 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.38 4.75 7.77 45.56 0.35 5.11 16 40 H 0.40 7.22 6.36 -40.82 -0.26 6.96 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.12 1.33 7.95 -52.49 -0.42 0.92 16 43 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -28.70 362.61 -5.78 -34.48 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -4.70 Total: 13.52 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.63 Total: -0.04 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.64 Total: -36.49 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.36 Total: -19.31 kcal Atomic # 9 Polarization: -12.27 SS G_CDS: 0.11 Total: -12.15 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.30 Total: 14.53 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.70 -5.78 -34.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.503 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds