Wall clock time and date at job start Wed Apr 1 2020 03:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38237 * 120.00003 * 2 1 4 4 C 1.38234 * 120.00408 * 180.34632 * 3 2 1 5 5 C 1.38236 * 119.99410 * 359.88748 * 4 3 2 6 6 C 1.50707 * 119.99614 * 180.10966 * 5 4 3 7 7 H 1.08997 * 109.46646 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46829 * 59.97847 * 6 5 4 9 9 C 1.52999 * 109.47293 * 299.97900 * 6 5 4 10 10 H 1.09002 * 109.46701 * 62.80220 * 9 6 5 11 11 O 1.42905 * 109.47038 * 302.81032 * 9 6 5 12 12 C 1.50689 * 109.47425 * 182.80549 * 9 6 5 13 13 O 1.21280 * 120.00246 * 288.21407 * 12 9 6 14 14 N 1.34774 * 120.00138 * 108.20442 * 12 9 6 15 15 C 1.46504 * 120.00132 * 175.59820 * 14 12 9 16 16 H 1.09005 * 109.46708 * 35.00905 * 15 14 12 17 17 C 1.50699 * 109.47086 * 155.00208 * 15 14 12 18 18 H 1.08000 * 120.00149 * 122.49447 * 17 15 14 19 19 C 1.37876 * 120.00320 * 302.49901 * 17 15 14 20 20 N 1.31516 * 120.00510 * 182.97100 * 19 17 15 21 21 Si 1.86807 * 119.99785 * 2.96972 * 19 17 15 22 22 H 1.48495 * 109.46901 * 93.70748 * 21 19 17 23 23 H 1.48502 * 109.46827 * 213.70707 * 21 19 17 24 24 H 1.48492 * 109.47051 * 333.70656 * 21 19 17 25 25 C 1.52994 * 109.47416 * 275.00286 * 15 14 12 26 26 F 1.39905 * 109.47024 * 64.94764 * 25 15 14 27 27 F 1.39900 * 109.47280 * 184.94615 * 25 15 14 28 28 F 1.39892 * 109.47422 * 304.94809 * 25 15 14 29 29 C 1.38237 * 120.00446 * 0.09303 * 5 4 3 30 30 C 1.38230 * 120.00246 * 180.27854 * 2 1 3 31 31 H 1.08998 * 109.46819 * 269.72000 * 1 2 3 32 32 H 1.09001 * 109.47547 * 29.72176 * 1 2 3 33 33 H 1.09001 * 109.47111 * 149.72122 * 1 2 3 34 34 H 1.08006 * 119.99913 * 0.28220 * 3 2 1 35 35 H 1.07992 * 119.99935 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.46411 * 178.48359 * 8 6 5 37 37 H 1.08997 * 109.47390 * 298.48562 * 8 6 5 38 38 H 1.09003 * 109.47115 * 58.48802 * 8 6 5 39 39 H 0.96698 * 113.99213 * 299.99436 * 11 9 6 40 40 H 0.97000 * 120.00302 * 355.60489 * 14 12 9 41 41 H 0.96993 * 120.00515 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.00118 * 180.02562 * 29 5 4 43 43 H 1.08003 * 119.99761 * 359.70223 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0072 5 6 4.2716 0.0001 -0.0121 6 6 5.7787 0.0002 -0.0175 7 1 6.1420 -1.0275 -0.0204 8 6 6.2931 0.7194 1.2311 9 6 6.2842 0.7235 -1.2674 10 1 5.9625 1.7646 -1.2397 11 8 5.7506 0.0909 -2.4324 12 6 7.7894 0.6637 -1.3081 13 8 8.4439 1.3244 -0.5297 14 7 8.4083 -0.1242 -2.2096 15 6 9.8696 -0.1097 -2.3141 16 1 10.3032 0.0351 -1.3246 17 6 10.3454 -1.4211 -2.8841 18 1 10.9363 -1.4344 -3.7880 19 6 10.0264 -2.6040 -2.2516 20 7 10.4902 -3.7437 -2.7157 21 14 8.9353 -2.5877 -0.7354 22 1 7.5228 -2.8028 -1.1398 23 1 9.3561 -3.6712 0.1888 24 1 9.0598 -1.2763 -0.0501 25 6 10.3038 1.0335 -3.2335 26 9 9.9614 2.2577 -2.6491 27 9 11.6888 0.9787 -3.4236 28 9 9.6584 0.9096 -4.4685 29 6 3.5805 -1.1971 -0.0117 30 6 2.1982 -1.1971 -0.0058 31 1 -0.3633 -0.0050 1.0276 32 1 -0.3634 0.8925 -0.5095 33 1 -0.3633 -0.8875 -0.5182 34 1 1.6581 2.1325 0.0046 35 1 4.1204 2.1326 -0.0068 36 1 7.3828 0.6959 1.2408 37 1 5.9520 1.7546 1.2206 38 1 5.9109 0.2200 2.1214 39 1 5.9969 -0.8398 -2.5221 40 1 7.8864 -0.7008 -2.7892 41 1 10.2661 -4.5759 -2.2706 42 1 4.1205 -2.1324 -0.0151 43 1 1.6582 -2.1324 -0.0055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928813120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:21 Heat of formation + Delta-G solvation = -245.471447 kcal Electronic energy + Delta-G solvation = -31838.527028 eV Core-core repulsion = 27046.364700 eV Total energy + Delta-G solvation = -4792.162328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.93537 -48.45222 -48.41071 -41.60820 -40.27381 -38.06500 -36.92275 -35.43170 -34.36615 -32.33859 -31.76514 -31.09090 -27.82716 -27.54731 -27.00238 -24.07335 -23.68838 -23.02846 -21.69224 -21.14064 -20.28801 -19.40032 -19.25580 -18.69906 -18.38999 -17.67314 -17.10959 -16.84358 -16.31400 -16.11586 -15.76914 -15.63272 -15.43929 -15.32559 -15.20179 -14.89299 -14.85451 -14.62757 -14.61673 -14.59217 -14.54625 -14.24992 -14.05280 -13.87835 -13.49471 -13.41789 -13.04193 -12.97627 -12.90698 -12.69839 -12.54492 -12.37916 -12.11385 -11.93868 -11.85797 -11.85262 -11.55070 -11.05874 -10.59796 -10.19212 -9.78677 -9.35508 -8.52872 -6.72343 0.42210 0.54007 1.17910 1.25785 1.40301 1.50389 1.86261 2.07652 2.19456 2.83830 2.91215 3.10476 3.14898 3.30116 3.36059 3.55763 3.61193 3.87249 3.93023 4.08528 4.12583 4.16692 4.33570 4.41278 4.53830 4.60121 4.63849 4.81691 4.86247 4.88079 4.91542 4.96811 5.00424 5.19324 5.22828 5.28957 5.34189 5.54818 5.72328 5.74212 5.85115 6.15575 6.23141 6.40716 6.59519 6.97112 7.06394 8.59363 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.003737 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.206758 B = 7491.340059 C = 8368.821301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.125 4.125 4 C -0.115 4.115 5 C -0.077 4.077 6 C -0.074 4.074 7 H 0.076 0.924 8 C -0.144 4.144 9 C 0.113 3.887 10 H 0.141 0.859 11 O -0.546 6.546 12 C 0.474 3.526 13 O -0.550 6.550 14 N -0.712 5.712 15 C 0.217 3.783 16 H 0.081 0.919 17 C -0.546 4.546 18 H 0.061 0.939 19 C 0.054 3.946 20 N -0.905 5.905 21 Si 0.932 3.068 22 H -0.236 1.236 23 H -0.297 1.297 24 H -0.259 1.259 25 C 0.444 3.556 26 F -0.191 7.191 27 F -0.187 7.187 28 F -0.185 7.185 29 C -0.123 4.123 30 C -0.126 4.126 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.385 0.615 40 H 0.409 0.591 41 H 0.279 0.721 42 H 0.124 0.876 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.996 5.795 6.522 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.143 4.143 4 C -0.132 4.132 5 C -0.077 4.077 6 C -0.093 4.093 7 H 0.094 0.906 8 C -0.201 4.201 9 C 0.051 3.949 10 H 0.158 0.842 11 O -0.353 6.353 12 C 0.261 3.739 13 O -0.428 6.428 14 N -0.368 5.368 15 C 0.112 3.888 16 H 0.098 0.902 17 C -0.584 4.584 18 H 0.080 0.920 19 C -0.151 4.151 20 N -0.540 5.540 21 Si 0.756 3.244 22 H -0.159 1.159 23 H -0.224 1.224 24 H -0.183 1.183 25 C 0.388 3.612 26 F -0.173 7.173 27 F -0.169 7.169 28 F -0.166 7.166 29 C -0.141 4.141 30 C -0.144 4.144 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.235 0.765 40 H 0.248 0.752 41 H 0.088 0.912 42 H 0.142 0.858 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.774 6.687 6.932 21.101 hybrid contribution 0.552 -0.946 0.008 1.095 sum -18.222 5.742 6.940 20.326 Atomic orbital electron populations 1.20821 0.89501 1.03525 1.02990 1.20259 0.97445 0.92995 0.99098 1.21259 0.93833 0.98523 1.00718 1.21102 0.94735 0.97582 0.99831 1.19463 0.93061 0.94147 1.01033 1.20694 0.93117 1.00467 0.95023 0.90606 1.21856 1.01401 1.00986 0.95888 1.22279 0.85914 1.00388 0.86366 0.84192 1.86633 1.75712 1.29863 1.43060 1.22184 0.92635 0.78894 0.80145 1.90663 1.67937 1.43930 1.40304 1.47114 1.07524 1.43399 1.38713 1.19901 0.81106 0.91898 0.95895 0.90177 1.20756 1.35980 0.88569 1.13048 0.92043 1.25597 0.95933 0.94291 0.99290 1.69958 1.43482 0.99076 1.41526 0.86009 0.80909 0.78243 0.79255 1.15920 1.22450 1.18322 1.21381 0.74715 0.84080 0.81009 1.93145 1.92049 1.47998 1.84077 1.93103 1.31666 1.96533 1.95575 1.93096 1.81551 1.96043 1.45953 1.21197 0.94936 0.97469 1.00467 1.21232 0.93756 0.98557 1.00845 0.90379 0.90778 0.90884 0.84371 0.85501 0.92718 0.90998 0.91230 0.76517 0.75219 0.91154 0.85831 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.59 16 2 C -0.10 -1.72 5.88 -19.87 -0.12 -1.84 16 3 C -0.13 -2.30 9.70 22.27 0.22 -2.09 16 4 C -0.11 -2.39 8.76 22.27 0.20 -2.20 16 5 C -0.08 -1.75 4.36 -19.86 -0.09 -1.84 16 6 C -0.07 -1.87 2.32 -11.54 -0.03 -1.89 16 7 H 0.08 1.99 7.77 -2.39 -0.02 1.98 16 8 C -0.14 -3.66 8.52 71.98 0.61 -3.05 16 9 C 0.11 3.14 2.84 29.84 0.08 3.22 16 10 H 0.14 3.63 7.49 -2.39 -0.02 3.61 16 11 O -0.55 -14.46 12.36 -148.98 -1.84 -16.30 16 12 C 0.47 16.94 5.24 87.65 0.46 17.40 16 13 O -0.55 -22.57 13.70 -3.03 -0.04 -22.61 16 14 N -0.71 -27.05 2.50 -446.11 -1.12 -28.17 16 15 C 0.22 9.67 1.41 44.24 0.06 9.73 16 16 H 0.08 3.79 6.87 -2.38 -0.02 3.78 16 17 C -0.55 -27.81 8.75 25.60 0.22 -27.58 16 18 H 0.06 3.52 7.84 -2.91 -0.02 3.49 16 19 C 0.05 2.74 5.47 84.65 0.46 3.20 16 20 N -0.91 -49.58 13.96 21.45 0.30 -49.28 16 21 Si 0.93 38.45 25.29 68.60 1.74 40.18 16 22 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 23 H -0.30 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.26 -10.94 5.75 99.48 0.57 -10.37 16 25 C 0.44 19.28 2.80 71.98 0.20 19.48 16 26 F -0.19 -8.09 16.01 44.97 0.72 -7.37 16 27 F -0.19 -8.34 16.78 44.97 0.75 -7.59 16 28 F -0.18 -7.87 16.97 44.97 0.76 -7.11 16 29 C -0.12 -2.64 9.67 22.27 0.22 -2.42 16 30 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 33 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 34 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.13 2.39 7.15 -2.91 -0.02 2.37 16 36 H 0.05 1.70 6.11 -2.39 -0.01 1.68 16 37 H 0.07 1.63 7.44 -2.39 -0.02 1.62 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.39 8.69 7.77 -74.06 -0.58 8.11 16 40 H 0.41 14.15 6.36 -92.71 -0.59 13.56 16 41 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.12 2.46 7.95 -2.91 -0.02 2.44 16 43 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -61.54 362.61 4.48 -57.06 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.23 Total: 33.80 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 3.43 Total: 7.38 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -0.82 Total: -77.45 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -1.88 Total: -38.91 kcal Atomic # 9 Polarization: -24.31 SS G_CDS: 2.24 Total: -22.07 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.74 Total: 40.18 kcal Total: -61.54 4.48 -57.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.407 kcal (2) G-P(sol) polarization free energy of solvation -61.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds