Wall clock time and date at job start Wed Apr 1 2020 03:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30013 * 127.33184 * 2 1 4 4 O 1.20657 * 112.29948 * 179.97438 * 3 2 1 5 5 C 1.33500 * 113.15679 * 359.72004 * 4 3 2 6 6 C 1.50701 * 126.82942 * 180.31217 * 5 4 3 7 7 F 1.39900 * 109.46996 * 30.16298 * 6 5 4 8 8 F 1.39900 * 109.46934 * 150.16565 * 6 5 4 9 9 C 1.37354 * 106.33793 * 0.44852 * 5 4 3 10 10 C 1.47405 * 128.56176 * 179.86116 * 9 5 4 11 11 O 1.21612 * 119.99742 * 269.67240 * 10 9 5 12 12 N 1.34773 * 120.00329 * 89.67595 * 10 9 5 13 13 C 1.46497 * 120.00288 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47260 * 180.02562 * 13 12 10 15 15 H 1.09005 * 110.63876 * 303.31300 * 14 13 12 16 16 C 1.54319 * 110.72026 * 66.45976 * 14 13 12 17 17 N 1.47019 * 107.27411 * 140.73488 * 16 14 13 18 18 C 1.36933 * 125.65365 * 181.02085 * 17 16 14 19 19 H 1.08005 * 119.99346 * 13.62994 * 18 17 16 20 20 C 1.38803 * 120.00505 * 193.62301 * 18 17 16 21 21 N 1.31626 * 119.99731 * 27.27804 * 20 18 17 22 22 Si 1.86804 * 120.00452 * 207.27269 * 20 18 17 23 23 H 1.48494 * 109.46849 * 90.00056 * 22 20 18 24 24 H 1.48503 * 109.46862 * 330.00133 * 22 20 18 25 25 H 1.48496 * 109.47029 * 210.00372 * 22 20 18 26 26 C 1.47429 * 108.70035 * 1.28221 * 17 16 14 27 27 C 1.55122 * 104.72375 * 335.55720 * 26 17 16 28 28 H 1.09002 * 111.19237 * 279.18719 * 27 26 17 29 29 O 1.42902 * 110.94245 * 155.28823 * 27 26 17 30 30 H 1.09003 * 109.47179 * 270.03760 * 1 2 3 31 31 H 1.09001 * 109.47280 * 30.04045 * 1 2 3 32 32 H 1.09003 * 109.47088 * 150.04278 * 1 2 3 33 33 H 1.09003 * 109.46809 * 270.16369 * 6 5 4 34 34 H 0.97003 * 119.99585 * 0.02562 * 12 10 9 35 35 H 1.09003 * 109.46590 * 60.00215 * 13 12 10 36 36 H 1.08997 * 109.47229 * 300.00877 * 13 12 10 37 37 H 1.09000 * 109.88113 * 21.31392 * 16 14 13 38 38 H 1.09006 * 110.00857 * 260.22355 * 16 14 13 39 39 H 0.96994 * 119.99479 * 5.84381 * 21 20 18 40 40 H 1.09001 * 110.36546 * 94.48417 * 26 17 16 41 41 H 1.08995 * 110.36676 * 216.80510 * 26 17 16 42 42 H 0.96703 * 114.00123 * 67.95196 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7208 0.0005 5 6 3.6494 -0.6008 0.0069 6 6 4.9712 -1.3245 0.0159 7 9 5.9249 -0.5454 0.6796 8 9 4.8277 -2.5493 0.6766 9 6 2.3992 -1.1696 0.0006 10 6 2.0401 -2.5992 0.0009 11 8 1.8923 -3.1892 -1.0522 12 7 1.8756 -3.2525 1.1682 13 6 1.5182 -4.6732 1.1684 14 6 1.3929 -5.1673 2.6110 15 1 2.3169 -4.9871 3.1605 16 6 0.1974 -4.4937 3.3170 17 7 -0.4487 -5.5162 4.1527 18 6 -1.5618 -5.3271 4.9276 19 1 -2.1670 -4.4423 4.7964 20 6 -1.9122 -6.2726 5.8815 21 7 -0.9853 -7.0301 6.4289 22 14 -3.6992 -6.4699 6.3887 23 1 -4.3543 -7.4742 5.5128 24 1 -4.3982 -5.1664 6.2561 25 1 -3.7656 -6.9258 7.8004 26 6 0.3039 -6.7773 4.0232 27 6 1.0162 -6.6720 2.6492 28 1 0.3389 -6.9260 1.8338 29 8 2.1849 -7.4937 2.6155 30 1 -0.3634 0.0007 1.0277 31 1 -0.3634 0.8896 -0.5145 32 1 -0.3633 -0.8904 -0.5132 33 1 5.2958 -1.5008 -1.0096 34 1 1.9930 -2.7817 2.0081 35 1 2.2928 -5.2427 0.6549 36 1 0.5666 -4.8086 0.6544 37 1 -0.5088 -4.1205 2.5754 38 1 0.5479 -3.6718 3.9415 39 1 -0.0494 -6.8713 6.2297 40 1 1.0353 -6.8667 4.8264 41 1 -0.3772 -7.6282 4.0328 42 1 1.9994 -8.4425 2.6375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958172683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:58 Heat of formation + Delta-G solvation = -121.327347 kcal Electronic energy + Delta-G solvation = -30845.844835 eV Core-core repulsion = 26078.985761 eV Total energy + Delta-G solvation = -4766.859074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.31977 -48.34853 -46.25764 -41.04555 -39.94272 -36.84031 -36.34799 -35.90015 -34.39306 -34.03907 -31.44256 -29.97520 -29.56606 -28.29769 -27.16841 -26.00370 -24.64828 -22.54617 -22.09190 -21.65434 -21.39178 -19.77091 -19.51271 -19.48786 -18.58462 -18.39782 -18.30093 -18.25713 -17.26340 -16.96936 -16.44854 -16.33062 -15.86071 -15.60973 -15.36074 -15.17154 -15.06915 -14.66920 -14.61886 -14.56226 -14.41784 -14.16145 -14.06391 -13.88844 -13.85890 -13.62696 -12.82344 -12.76468 -12.63845 -12.61354 -12.43479 -12.34227 -11.89297 -11.85051 -11.65174 -11.44726 -11.19318 -11.06504 -10.96906 -10.56967 -10.32404 -9.08675 -8.35226 -5.36471 -0.29501 0.56304 1.01232 1.14983 1.58328 1.65243 1.82791 1.84534 2.43797 2.60427 2.80162 2.86089 3.01029 3.19616 3.24809 3.37566 3.43951 3.54451 3.61784 3.74153 3.79341 3.85416 3.95795 4.24501 4.25525 4.27756 4.43023 4.50240 4.58288 4.63318 4.77644 4.80569 4.94659 4.98038 5.07777 5.09876 5.21877 5.61605 6.18876 6.27025 6.77359 6.80160 6.83101 6.85307 7.65675 8.21253 8.97477 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.002829 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.663549 B = 9895.769364 C =10900.271788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.059 3.941 3 N -0.355 5.355 4 O 0.125 5.875 5 C -0.061 4.061 6 C 0.363 3.637 7 F -0.186 7.186 8 F -0.186 7.186 9 C -0.216 4.216 10 C 0.603 3.397 11 O -0.552 6.552 12 N -0.698 5.698 13 C 0.147 3.853 14 C -0.089 4.089 15 H 0.090 0.910 16 C 0.140 3.860 17 N -0.624 5.624 18 C -0.346 4.346 19 H 0.067 0.933 20 C -0.078 4.078 21 N -0.949 5.949 22 Si 1.118 2.882 23 H -0.283 1.283 24 H -0.271 1.271 25 H -0.296 1.296 26 C 0.123 3.877 27 C 0.110 3.890 28 H 0.083 0.917 29 O -0.565 6.565 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.195 0.805 34 H 0.412 0.588 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.025 0.975 39 H 0.256 0.744 40 H 0.009 0.991 41 H 0.028 0.972 42 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.245 11.500 -16.245 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 N -0.058 5.058 4 O 0.060 5.940 5 C -0.126 4.126 6 C 0.309 3.691 7 F -0.166 7.166 8 F -0.167 7.167 9 C -0.224 4.224 10 C 0.387 3.613 11 O -0.430 6.430 12 N -0.348 5.348 13 C 0.024 3.976 14 C -0.108 4.108 15 H 0.108 0.892 16 C 0.015 3.985 17 N -0.352 5.352 18 C -0.475 4.475 19 H 0.085 0.915 20 C -0.273 4.273 21 N -0.592 5.592 22 Si 0.942 3.058 23 H -0.210 1.210 24 H -0.196 1.196 25 H -0.222 1.222 26 C -0.003 4.003 27 C 0.050 3.950 28 H 0.101 0.899 29 O -0.372 6.372 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.212 0.788 34 H 0.248 0.752 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.026 0.974 41 H 0.046 0.954 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 9.126 12.096 -16.001 22.037 hybrid contribution 0.800 -0.230 0.208 0.858 sum 9.926 11.866 -15.793 22.108 Atomic orbital electron populations 1.20452 0.82850 1.05452 1.05318 1.25250 0.99977 0.85255 0.99760 1.73642 0.89200 1.23411 1.19586 1.84608 1.21483 1.20889 1.67023 1.25489 0.97583 0.85608 1.03958 1.20113 0.78756 0.73833 0.96425 1.93088 1.64695 1.75052 1.83815 1.93115 1.95646 1.43821 1.84115 1.21997 0.92822 0.95551 1.12006 1.16787 0.76736 0.83836 0.83908 1.90843 1.51840 1.68306 1.32045 1.45842 1.68920 1.11612 1.08387 1.21273 1.01577 0.79782 0.94969 1.22230 0.98998 0.93885 0.95683 0.89176 1.21522 0.92332 0.91676 0.92949 1.44662 1.31217 1.06715 1.52609 1.20086 1.01394 1.10175 1.15797 0.91541 1.27111 1.08940 0.96853 0.94435 1.70883 1.01493 1.45094 1.41756 0.82807 0.70739 0.76703 0.75515 1.21012 1.19580 1.22227 1.22132 0.93580 0.89472 0.95140 1.22798 0.86452 0.90243 0.95535 0.89943 1.86391 1.31444 1.22457 1.96954 0.88044 0.88094 0.89280 0.78847 0.75237 0.90003 0.90749 0.94079 0.95671 0.93285 0.97371 0.95357 0.75337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.49 71.24 0.75 -0.54 16 2 C 0.06 1.20 7.59 45.16 0.34 1.54 16 3 N -0.35 -7.65 12.01 -44.79 -0.54 -8.19 16 4 O 0.12 2.45 11.06 76.92 0.85 3.30 16 5 C -0.06 -1.09 7.13 25.48 0.18 -0.91 16 6 C 0.36 4.78 5.81 71.24 0.41 5.19 16 7 F -0.19 -2.83 17.32 44.97 0.78 -2.05 16 8 F -0.19 -3.39 16.11 44.97 0.72 -2.67 16 9 C -0.22 -4.58 6.19 -18.74 -0.12 -4.69 16 10 C 0.60 14.71 6.59 86.66 0.57 15.29 16 11 O -0.55 -16.77 17.11 -4.07 -0.07 -16.84 16 12 N -0.70 -16.05 5.40 -466.40 -2.52 -18.56 16 13 C 0.15 3.74 5.01 86.38 0.43 4.18 16 14 C -0.09 -2.70 2.74 -9.61 -0.03 -2.73 16 15 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 16 C 0.14 5.24 6.52 86.73 0.57 5.81 16 17 N -0.62 -30.42 3.33 -691.57 -2.30 -32.72 16 18 C -0.35 -19.07 10.05 84.03 0.84 -18.22 16 19 H 0.07 3.61 7.96 -2.91 -0.02 3.58 16 20 C -0.08 -4.37 5.09 84.86 0.43 -3.94 16 21 N -0.95 -57.50 12.82 21.65 0.28 -57.23 16 22 Si 1.12 50.10 30.00 68.60 2.06 52.16 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 26 C 0.12 5.55 4.96 86.93 0.43 5.98 16 27 C 0.11 3.65 3.89 32.06 0.12 3.77 16 28 H 0.08 2.52 8.05 -2.39 -0.02 2.50 16 29 O -0.57 -16.57 13.47 -148.98 -2.01 -18.57 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.20 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.41 8.58 8.31 -92.71 -0.77 7.81 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 1.95 8.06 -2.39 -0.02 1.93 16 37 H 0.04 1.48 7.77 -2.39 -0.02 1.46 16 38 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.26 15.77 5.83 -92.71 -0.54 15.23 16 40 H 0.01 0.43 6.84 -2.39 -0.02 0.41 16 41 H 0.03 1.40 7.73 -2.39 -0.02 1.38 16 42 H 0.40 8.50 9.12 -74.05 -0.68 7.83 16 Total: -1.00 -74.59 368.67 2.09 -72.50 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -0.12 Total: 18.15 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 4.94 Total: 10.73 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -5.08 Total: -116.71 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.23 Total: -32.12 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 1.50 Total: -4.72 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.06 Total: 52.16 kcal Total: -74.59 2.09 -72.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958172683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.825 kcal (2) G-P(sol) polarization free energy of solvation -74.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds