Wall clock time and date at job start Wed Apr 1 2020 03:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38896 * 119.48520 * 2 1 4 4 C 1.36802 * 120.31040 * 179.97438 * 3 2 1 5 5 C 1.38702 * 119.62698 * 0.02562 * 4 3 2 6 6 S 1.76253 * 134.18486 * 180.02562 * 5 4 3 7 7 N 1.56004 * 97.55936 * 180.02562 * 6 5 4 8 8 C 1.29684 * 111.74235 * 359.97438 * 7 6 5 9 9 C 1.47378 * 121.82820 * 180.02562 * 8 7 6 10 10 O 1.21613 * 120.00006 * 179.97438 * 9 8 7 11 11 N 1.34784 * 120.00173 * 359.97438 * 9 8 7 12 12 C 1.46494 * 120.00087 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47602 * 34.99982 * 12 11 9 14 14 C 1.53005 * 109.47084 * 274.99860 * 12 11 9 15 15 C 1.53000 * 109.46984 * 155.00095 * 12 11 9 16 16 C 1.53947 * 113.74170 * 278.73836 * 15 12 11 17 17 N 1.47818 * 86.03826 * 222.08750 * 16 15 12 18 18 C 1.36934 * 134.45536 * 204.64928 * 17 16 15 19 19 H 1.07996 * 119.99537 * 179.86499 * 18 17 16 20 20 C 1.38810 * 120.00095 * 359.86170 * 18 17 16 21 21 N 1.31623 * 120.00082 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00167 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47561 * 89.99417 * 22 20 18 24 24 H 1.48501 * 109.47260 * 209.99933 * 22 20 18 25 25 H 1.48503 * 109.46916 * 329.99635 * 22 20 18 26 26 C 1.47583 * 91.05110 * 24.54754 * 17 16 15 27 27 C 1.40667 * 120.66248 * 0.02562 * 5 4 3 28 28 C 1.36335 * 119.48029 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47256 * 269.97389 * 1 2 3 30 30 H 1.09004 * 109.47369 * 29.97306 * 1 2 3 31 31 H 1.09000 * 109.47602 * 149.97586 * 1 2 3 32 32 H 1.08004 * 119.84830 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.18999 * 180.02562 * 4 3 2 34 34 H 0.97006 * 119.99634 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.47036 * 299.99966 * 14 12 11 36 36 H 1.08995 * 109.47269 * 59.99945 * 14 12 11 37 37 H 1.08995 * 109.46860 * 180.02562 * 14 12 11 38 38 H 1.08999 * 112.94789 * 50.33432 * 15 12 11 39 39 H 1.09001 * 113.76886 * 336.34850 * 16 15 12 40 40 H 1.08999 * 113.77129 * 107.74576 * 16 15 12 41 41 H 0.96998 * 120.00100 * 180.02562 * 21 20 18 42 42 H 1.08992 * 113.77083 * 221.15850 * 26 17 16 43 43 H 1.09003 * 113.87216 * 89.76704 * 26 17 16 44 44 H 1.08001 * 120.01626 * 359.72621 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2091 0.0000 4 6 3.5585 1.2288 0.0005 5 6 4.2615 0.0331 0.0005 6 16 5.9736 -0.3853 0.0017 7 7 5.8058 -1.9363 0.0001 8 6 4.5566 -2.2844 -0.0007 9 6 4.1440 -3.6992 -0.0017 10 8 2.9626 -3.9881 -0.0020 11 7 5.0758 -4.6730 -0.0022 12 6 4.6656 -6.0794 -0.0025 13 1 3.7556 -6.1924 -0.5918 14 6 4.4025 -6.5343 1.4344 15 6 5.7778 -6.9348 -0.6127 16 6 5.7816 -6.9405 -2.1521 17 7 6.0471 -8.3906 -2.0440 18 6 6.6336 -9.3216 -2.8591 19 1 6.7091 -10.3498 -2.5375 20 6 7.1309 -8.9438 -4.0988 21 7 7.0384 -7.6907 -4.4910 22 14 7.9303 -10.2139 -5.2110 23 1 6.8986 -10.8235 -6.0879 24 1 8.9661 -9.5569 -6.0482 25 1 8.5620 -11.2710 -4.3811 26 6 5.4289 -8.4315 -0.7045 27 6 3.5820 -1.1986 -0.0006 28 6 2.1779 -1.1868 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6397 2.1381 0.0004 33 1 4.0881 2.1700 0.0009 34 1 6.0181 -4.4426 -0.0023 35 1 5.3125 -6.4213 2.0237 36 1 3.6102 -5.9248 1.8691 37 1 4.0977 -7.5807 1.4341 38 1 6.7552 -6.7383 -0.1721 39 1 4.8143 -6.7028 -2.5947 40 1 6.6026 -6.3739 -2.5915 41 1 7.3856 -7.4268 -5.3573 42 1 5.9689 -9.0530 0.0097 43 1 4.3578 -8.6328 -0.7189 44 1 1.6297 -2.1174 0.0035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970271909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:47 Heat of formation + Delta-G solvation = 68.420136 kcal Electronic energy + Delta-G solvation = -26915.893762 eV Core-core repulsion = 23154.245157 eV Total energy + Delta-G solvation = -3761.648605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79312 -39.43899 -38.09490 -37.18925 -34.83460 -32.89967 -32.17840 -31.12385 -30.40852 -27.50394 -27.35516 -26.26784 -24.73725 -23.95878 -23.25370 -21.86010 -20.93335 -20.30753 -19.15824 -18.60273 -17.46303 -16.80125 -16.53527 -15.87960 -15.58975 -15.52532 -14.87869 -14.78135 -14.38087 -14.19917 -14.01109 -13.79833 -13.72912 -13.44659 -12.99994 -12.57897 -12.42796 -12.30630 -12.16081 -12.04433 -11.91844 -11.64694 -11.40284 -11.29610 -11.26769 -10.93874 -10.89717 -10.69397 -10.35720 -10.02705 -9.95344 -9.75072 -9.73721 -9.38772 -9.22805 -8.84851 -8.77028 -8.06918 -6.84753 -5.73605 -3.06029 0.12897 0.79480 1.09275 1.44039 1.55461 3.02922 3.16006 3.40865 3.42439 3.45318 3.47550 4.05206 4.38969 4.47339 4.51592 4.80241 4.88957 5.02277 5.09123 5.16251 5.28028 5.29135 5.30482 5.32997 5.55505 5.62462 5.67224 5.69948 5.74811 5.80946 5.83339 5.96284 6.04007 6.06135 6.24356 6.25732 6.36538 6.41758 6.53060 6.59413 6.67139 6.80635 7.26679 7.39216 7.59084 7.62992 8.00921 8.22980 9.07330 9.73781 10.63157 11.43370 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.002405 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.368387 B =11640.235682 C =12093.341223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.090 4.090 4 C -0.071 4.071 5 C -0.206 4.206 6 S 0.385 5.615 7 N -0.485 5.485 8 C 0.094 3.906 9 C 0.588 3.412 10 O -0.530 6.530 11 N -0.694 5.694 12 C 0.149 3.851 13 H 0.091 0.909 14 C -0.158 4.158 15 C -0.147 4.147 16 C 0.171 3.829 17 N -0.613 5.613 18 C -0.222 4.222 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.131 3.869 27 C -0.083 4.083 28 C -0.043 4.043 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.408 0.592 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.035 0.965 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.907 21.076 13.423 26.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.112 4.112 4 C -0.093 4.093 5 C -0.327 4.327 6 S 0.545 5.455 7 N -0.311 5.311 8 C -0.095 4.095 9 C 0.369 3.631 10 O -0.406 6.406 11 N -0.345 5.345 12 C 0.045 3.955 13 H 0.109 0.891 14 C -0.217 4.217 15 C -0.167 4.167 16 C 0.045 3.955 17 N -0.339 5.339 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.005 3.995 27 C -0.093 4.093 28 C -0.065 4.065 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.244 0.756 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.238 20.862 13.120 25.686 hybrid contribution -0.810 -0.938 -0.807 1.479 sum -8.048 19.924 12.314 24.766 Atomic orbital electron populations 1.20838 0.90324 1.03305 1.02709 1.19659 0.96820 0.92586 0.99814 1.20946 0.93645 0.97959 0.98695 1.19896 0.93762 0.95226 1.00384 1.24274 1.01682 0.97777 1.08979 1.81404 1.02324 0.94724 1.67095 1.71439 1.23640 1.16824 1.19209 1.21976 0.86466 0.96132 1.04933 1.17113 0.85896 0.82785 0.77308 1.90759 1.16708 1.82495 1.50648 1.45973 1.09984 1.06166 1.72334 1.21204 0.99275 0.78289 0.96734 0.89128 1.22135 1.01497 1.01784 0.96237 1.23837 0.97159 0.95876 0.99851 1.22297 0.98683 0.86102 0.88381 1.45994 1.66104 1.06046 1.15737 1.19021 1.29746 0.89675 0.96559 0.90266 1.24792 1.01648 0.96587 0.97537 1.69824 1.50973 1.15128 1.20879 0.86125 0.78749 0.80269 0.80650 1.21642 1.21663 1.20629 1.22483 0.96036 0.92220 0.88787 1.19569 0.95145 0.89876 1.04717 1.20702 0.90818 0.99183 0.95781 0.90836 0.91269 0.90942 0.84861 0.84820 0.75644 0.92657 0.92684 0.91189 0.89323 0.95602 0.91034 0.93691 0.93727 0.94708 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.98 36.00 0.36 -0.38 16 2 C -0.09 -0.79 5.84 -105.07 -0.61 -1.40 16 3 C -0.09 -0.68 9.63 -39.86 -0.38 -1.07 16 4 C -0.07 -0.59 10.03 -39.93 -0.40 -0.99 16 5 C -0.21 -2.25 6.73 -38.49 -0.26 -2.51 16 6 S 0.39 4.06 23.36 -107.50 -2.51 1.55 16 7 N -0.49 -6.59 10.49 28.24 0.30 -6.30 16 8 C 0.09 1.35 6.82 -81.99 -0.56 0.80 16 9 C 0.59 9.41 7.77 -12.54 -0.10 9.31 16 10 O -0.53 -9.33 14.67 5.27 0.08 -9.26 16 11 N -0.69 -10.66 5.07 -54.89 -0.28 -10.94 16 12 C 0.15 2.39 2.38 -67.93 -0.16 2.23 16 13 H 0.09 1.62 7.41 -51.93 -0.39 1.23 16 14 C -0.16 -2.15 9.31 37.16 0.35 -1.80 16 15 C -0.15 -2.72 3.47 -89.69 -0.31 -3.04 16 16 C 0.17 4.09 7.08 -2.83 -0.02 4.07 16 17 N -0.61 -16.01 3.70 -177.66 -0.66 -16.67 16 18 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -27.91 11.39 55.49 0.63 -27.27 16 22 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.13 2.67 7.64 -2.96 -0.02 2.65 16 27 C -0.08 -1.08 6.10 -105.09 -0.64 -1.72 16 28 C -0.04 -0.51 9.17 -39.45 -0.36 -0.87 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.07 0.48 8.07 -51.93 -0.42 0.07 16 32 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.41 5.93 8.04 -40.82 -0.33 5.61 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.90 7.51 -51.93 -0.39 0.51 16 38 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 39 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 40 H 0.07 1.90 7.17 -51.93 -0.37 1.53 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.15 1.86 6.64 -52.49 -0.35 1.51 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -33.56 379.68 -11.13 -44.69 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.00 Total: 2.57 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.38 Total: -1.61 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.01 Total: -61.18 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -2.51 Total: 1.55 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.56 -11.13 -44.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970271909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.108 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds