Wall clock time and date at job start Wed Apr 1 2020 03:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38896 * 119.48520 * 2 1 4 4 C 1.36802 * 120.31040 * 179.97438 * 3 2 1 5 5 C 1.38702 * 119.62698 * 0.02562 * 4 3 2 6 6 S 1.76253 * 134.18486 * 180.02562 * 5 4 3 7 7 N 1.56004 * 97.55936 * 180.02562 * 6 5 4 8 8 C 1.29684 * 111.74235 * 359.97438 * 7 6 5 9 9 C 1.47378 * 121.82820 * 180.02562 * 8 7 6 10 10 O 1.21613 * 120.00006 * 179.97438 * 9 8 7 11 11 N 1.34784 * 120.00173 * 359.97438 * 9 8 7 12 12 C 1.46494 * 120.00087 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47602 * 34.99982 * 12 11 9 14 14 C 1.53005 * 109.47084 * 274.99860 * 12 11 9 15 15 C 1.53000 * 109.46984 * 155.00095 * 12 11 9 16 16 C 1.53947 * 113.74170 * 278.73836 * 15 12 11 17 17 N 1.47818 * 86.03826 * 222.08750 * 16 15 12 18 18 C 1.36934 * 134.45536 * 204.64928 * 17 16 15 19 19 H 1.07996 * 119.99537 * 179.86499 * 18 17 16 20 20 C 1.38810 * 120.00095 * 359.86170 * 18 17 16 21 21 N 1.31623 * 120.00082 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00167 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47561 * 89.99417 * 22 20 18 24 24 H 1.48501 * 109.47260 * 209.99933 * 22 20 18 25 25 H 1.48503 * 109.46916 * 329.99635 * 22 20 18 26 26 C 1.47583 * 91.05110 * 24.54754 * 17 16 15 27 27 C 1.40667 * 120.66248 * 0.02562 * 5 4 3 28 28 C 1.36335 * 119.48029 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47256 * 269.97389 * 1 2 3 30 30 H 1.09004 * 109.47369 * 29.97306 * 1 2 3 31 31 H 1.09000 * 109.47602 * 149.97586 * 1 2 3 32 32 H 1.08004 * 119.84830 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.18999 * 180.02562 * 4 3 2 34 34 H 0.97006 * 119.99634 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.47036 * 299.99966 * 14 12 11 36 36 H 1.08995 * 109.47269 * 59.99945 * 14 12 11 37 37 H 1.08995 * 109.46860 * 180.02562 * 14 12 11 38 38 H 1.08999 * 112.94789 * 50.33432 * 15 12 11 39 39 H 1.09001 * 113.76886 * 336.34850 * 16 15 12 40 40 H 1.08999 * 113.77129 * 107.74576 * 16 15 12 41 41 H 0.96998 * 120.00100 * 180.02562 * 21 20 18 42 42 H 1.08992 * 113.77083 * 221.15850 * 26 17 16 43 43 H 1.09003 * 113.87216 * 89.76704 * 26 17 16 44 44 H 1.08001 * 120.01626 * 359.72621 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2091 0.0000 4 6 3.5585 1.2288 0.0005 5 6 4.2615 0.0331 0.0005 6 16 5.9736 -0.3853 0.0017 7 7 5.8058 -1.9363 0.0001 8 6 4.5566 -2.2844 -0.0007 9 6 4.1440 -3.6992 -0.0017 10 8 2.9626 -3.9881 -0.0020 11 7 5.0758 -4.6730 -0.0022 12 6 4.6656 -6.0794 -0.0025 13 1 3.7556 -6.1924 -0.5918 14 6 4.4025 -6.5343 1.4344 15 6 5.7778 -6.9348 -0.6127 16 6 5.7816 -6.9405 -2.1521 17 7 6.0471 -8.3906 -2.0440 18 6 6.6336 -9.3216 -2.8591 19 1 6.7091 -10.3498 -2.5375 20 6 7.1309 -8.9438 -4.0988 21 7 7.0384 -7.6907 -4.4910 22 14 7.9303 -10.2139 -5.2110 23 1 6.8986 -10.8235 -6.0879 24 1 8.9661 -9.5569 -6.0482 25 1 8.5620 -11.2710 -4.3811 26 6 5.4289 -8.4315 -0.7045 27 6 3.5820 -1.1986 -0.0006 28 6 2.1779 -1.1868 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6397 2.1381 0.0004 33 1 4.0881 2.1700 0.0009 34 1 6.0181 -4.4426 -0.0023 35 1 5.3125 -6.4213 2.0237 36 1 3.6102 -5.9248 1.8691 37 1 4.0977 -7.5807 1.4341 38 1 6.7552 -6.7383 -0.1721 39 1 4.8143 -6.7028 -2.5947 40 1 6.6026 -6.3739 -2.5915 41 1 7.3856 -7.4268 -5.3573 42 1 5.9689 -9.0530 0.0097 43 1 4.3578 -8.6328 -0.7189 44 1 1.6297 -2.1174 0.0035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970271909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:46 Heat of formation + Delta-G solvation = 47.396752 kcal Electronic energy + Delta-G solvation = -26916.805405 eV Core-core repulsion = 23154.245157 eV Total energy + Delta-G solvation = -3762.560248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.78281 -40.62112 -39.60201 -38.16570 -36.27997 -34.21417 -33.56956 -32.04979 -31.68017 -29.40085 -28.01090 -27.38650 -26.44096 -25.62072 -24.19046 -23.01113 -22.11621 -21.53864 -20.67475 -19.51716 -18.81673 -18.53784 -17.65646 -16.96228 -16.92956 -16.63559 -16.37586 -15.85831 -15.72218 -15.36843 -15.21566 -14.89463 -14.75353 -14.65564 -14.36935 -14.10692 -13.45578 -13.29535 -13.14466 -13.12214 -13.00883 -12.93689 -12.80121 -12.73590 -12.60564 -12.53986 -12.35529 -12.02598 -11.77752 -11.73628 -11.54089 -11.30719 -11.00606 -10.88055 -10.77242 -10.16468 -9.96447 -8.94926 -8.88234 -7.92203 -5.26468 -0.78908 0.01405 0.27621 0.56146 0.62805 1.43015 1.45752 1.54361 1.93304 2.01420 2.45543 2.58984 3.17477 3.27935 3.34436 3.53134 3.72313 3.83601 3.89894 3.96595 4.21670 4.25150 4.35352 4.38097 4.43642 4.54934 4.71091 4.72154 4.78755 4.79137 4.82600 4.87140 4.97619 4.99268 5.03901 5.13969 5.19053 5.22522 5.29405 5.30136 5.39719 5.51208 5.56987 5.61667 5.84821 5.90575 6.39392 6.88799 7.00470 7.58725 8.54372 9.24687 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.002405 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.368387 B =11640.235682 C =12093.341223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C -0.082 4.082 4 C -0.066 4.066 5 C -0.219 4.219 6 S 0.437 5.563 7 N -0.509 5.509 8 C 0.066 3.934 9 C 0.585 3.415 10 O -0.555 6.555 11 N -0.694 5.694 12 C 0.158 3.842 13 H 0.069 0.931 14 C -0.148 4.148 15 C -0.112 4.112 16 C 0.167 3.833 17 N -0.644 5.644 18 C -0.234 4.234 19 H 0.087 0.913 20 C -0.072 4.072 21 N -0.956 5.956 22 Si 0.981 3.019 23 H -0.288 1.288 24 H -0.294 1.294 25 H -0.264 1.264 26 C 0.134 3.866 27 C -0.108 4.108 28 C -0.074 4.074 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.174 0.826 33 H 0.170 0.830 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.004 0.996 40 H 0.037 0.963 41 H 0.247 0.753 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 22.857 14.887 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.105 4.105 4 C -0.087 4.087 5 C -0.340 4.340 6 S 0.597 5.403 7 N -0.337 5.337 8 C -0.121 4.121 9 C 0.367 3.633 10 O -0.433 6.433 11 N -0.344 5.344 12 C 0.053 3.947 13 H 0.087 0.913 14 C -0.207 4.207 15 C -0.132 4.132 16 C 0.042 3.958 17 N -0.371 5.371 18 C -0.362 4.362 19 H 0.105 0.895 20 C -0.265 4.265 21 N -0.605 5.605 22 Si 0.809 3.191 23 H -0.215 1.215 24 H -0.221 1.221 25 H -0.189 1.189 26 C 0.009 3.991 27 C -0.118 4.118 28 C -0.096 4.096 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.192 0.808 33 H 0.188 0.812 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.022 0.978 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.473 22.632 14.629 27.965 hybrid contribution -0.793 -1.349 -1.241 1.997 sum -8.267 21.283 13.388 26.468 Atomic orbital electron populations 1.20916 0.88524 1.04065 1.03663 1.20030 0.98211 0.92229 0.97747 1.21425 0.93628 0.98739 0.96671 1.20425 0.94263 0.95507 0.98543 1.24536 1.01689 0.98064 1.09718 1.81041 1.01796 0.92365 1.65089 1.71187 1.23697 1.19506 1.19354 1.21798 0.87237 0.95514 1.07569 1.17410 0.85548 0.83730 0.76612 1.90729 1.17619 1.83167 1.51794 1.45919 1.10200 1.05868 1.72439 1.20995 0.97085 0.78516 0.98064 0.91307 1.22050 1.02248 1.02283 0.94069 1.23458 0.98576 0.95493 0.95638 1.22157 0.96148 0.85308 0.92193 1.46424 1.66634 1.06454 1.17564 1.19476 1.29154 0.90551 0.97056 0.89509 1.25701 1.02954 0.98573 0.99271 1.70038 1.52441 1.17127 1.20922 0.85034 0.77507 0.78028 0.78508 1.21470 1.22096 1.18892 1.22672 0.96575 0.93479 0.86396 1.19695 0.95669 0.90356 1.06098 1.20696 0.90630 0.99741 0.98565 0.89664 0.88871 0.91838 0.80817 0.81245 0.75199 0.91078 0.92836 0.89993 0.88175 0.97775 0.94425 0.94409 0.91488 0.93401 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.98 71.23 0.71 -0.56 16 2 C -0.08 -1.34 5.84 -20.15 -0.12 -1.46 16 3 C -0.08 -0.96 9.63 22.09 0.21 -0.75 16 4 C -0.07 -0.88 10.03 22.04 0.22 -0.66 16 5 C -0.22 -4.52 6.73 22.97 0.15 -4.37 16 6 S 0.44 8.81 23.36 -56.49 -1.32 7.49 16 7 N -0.51 -14.13 10.49 -64.55 -0.68 -14.81 16 8 C 0.07 2.00 6.82 43.85 0.30 2.30 16 9 C 0.59 19.82 7.77 86.65 0.67 20.49 16 10 O -0.56 -20.90 14.67 -4.07 -0.06 -20.96 16 11 N -0.69 -22.14 5.07 -445.84 -2.26 -24.40 16 12 C 0.16 5.13 2.38 44.99 0.11 5.24 16 13 H 0.07 2.56 7.41 -2.39 -0.02 2.55 16 14 C -0.15 -3.86 9.31 71.98 0.67 -3.19 16 15 C -0.11 -4.16 3.47 -10.13 -0.04 -4.19 16 16 C 0.17 8.40 7.08 86.44 0.61 9.02 16 17 N -0.64 -34.20 3.70 -716.00 -2.65 -36.85 16 18 C -0.23 -13.53 10.70 84.03 0.90 -12.63 16 19 H 0.09 4.74 7.83 -2.91 -0.02 4.71 16 20 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 21 N -0.96 -60.10 11.39 21.65 0.25 -59.85 16 22 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 26 C 0.13 5.34 7.64 86.49 0.66 6.00 16 27 C -0.11 -2.91 6.10 -20.17 -0.12 -3.03 16 28 C -0.07 -1.81 9.17 22.35 0.21 -1.61 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 31 H 0.06 0.83 8.07 -2.39 -0.02 0.81 16 32 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 33 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.41 12.40 8.04 -92.70 -0.75 11.65 16 35 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.94 7.51 -2.39 -0.02 1.92 16 38 H 0.10 3.53 8.14 -2.39 -0.02 3.52 16 39 H 0.00 0.24 7.99 -2.39 -0.02 0.22 16 40 H 0.04 2.12 7.17 -2.39 -0.02 2.10 16 41 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 44 H 0.13 3.54 6.64 -2.91 -0.02 3.52 16 Total: -1.00 -76.71 379.68 1.21 -75.50 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.29 Total: 18.03 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.62 Total: 6.79 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -5.34 Total: -135.90 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.06 Total: -20.96 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 16 Polarization: 8.81 SS G_CDS: -1.32 Total: 7.49 kcal Total: -76.71 1.21 -75.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970271909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.896 kcal (2) G-P(sol) polarization free energy of solvation -76.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds