Wall clock time and date at job start Wed Apr 1 2020 03:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38911 * 119.48314 * 2 1 4 4 C 1.36806 * 120.30891 * 179.97438 * 3 2 1 5 5 C 1.38699 * 119.62293 * 0.02653 * 4 3 2 6 6 S 1.76257 * 134.18087 * 179.97438 * 5 4 3 7 7 N 1.56001 * 97.56282 * 179.81634 * 6 5 4 8 8 C 1.29691 * 111.74281 * 0.37051 * 7 6 5 9 9 C 1.47372 * 121.83436 * 179.83835 * 8 7 6 10 10 O 1.21615 * 120.00344 * 179.71423 * 9 8 7 11 11 N 1.34781 * 119.99686 * 359.70887 * 9 8 7 12 12 C 1.47422 * 125.65019 * 0.02788 * 11 9 8 13 13 C 1.54911 * 104.83237 * 155.83407 * 12 11 9 14 14 C 1.55154 * 101.61747 * 36.99273 * 13 12 11 15 15 H 1.09002 * 110.71631 * 82.88010 * 14 13 12 16 16 N 1.46492 * 110.72216 * 206.15147 * 14 13 12 17 17 C 1.46504 * 120.00006 * 60.00058 * 16 14 13 18 18 C 1.36936 * 120.00320 * 240.00094 * 16 14 13 19 19 H 1.07998 * 119.99955 * 23.30652 * 18 16 14 20 20 C 1.38810 * 119.99854 * 203.30312 * 18 16 14 21 21 N 1.31617 * 120.00536 * 14.10907 * 20 18 16 22 22 Si 1.86804 * 119.99755 * 194.10396 * 20 18 16 23 23 H 1.48493 * 109.47253 * 90.00093 * 22 20 18 24 24 H 1.48499 * 109.46964 * 210.00308 * 22 20 18 25 25 H 1.48503 * 109.46918 * 330.00004 * 22 20 18 26 26 C 1.47026 * 125.64925 * 179.97438 * 11 9 8 27 27 C 1.40672 * 120.67159 * 359.97438 * 5 4 3 28 28 C 1.36332 * 119.48068 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47288 * 89.99507 * 1 2 3 30 30 H 1.08991 * 109.47156 * 210.00075 * 1 2 3 31 31 H 1.09006 * 109.47003 * 329.99760 * 1 2 3 32 32 H 1.07994 * 119.84318 * 0.02562 * 3 2 1 33 33 H 1.07995 * 120.18889 * 179.97438 * 4 3 2 34 34 H 1.09007 * 110.36275 * 36.99691 * 12 11 9 35 35 H 1.09001 * 110.46472 * 274.72346 * 12 11 9 36 36 H 1.09001 * 111.00026 * 155.08886 * 13 12 11 37 37 H 1.08997 * 111.00302 * 278.89900 * 13 12 11 38 38 H 1.08996 * 109.47189 * 95.17173 * 17 16 14 39 39 H 1.08996 * 109.47541 * 215.17592 * 17 16 14 40 40 H 1.09007 * 109.46832 * 335.17605 * 17 16 14 41 41 H 0.96996 * 120.00064 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.88059 * 300.51808 * 26 11 9 43 43 H 1.09000 * 109.87622 * 61.68074 * 26 11 9 44 44 H 1.08000 * 120.02058 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1907 1.2092 0.0000 4 6 3.5586 1.2289 0.0005 5 6 4.2615 0.0332 0.0005 6 16 5.9737 -0.3852 0.0005 7 7 5.8060 -1.9361 0.0054 8 6 4.5567 -2.2843 -0.0003 9 6 4.1441 -3.6991 -0.0008 10 8 2.9628 -3.9881 -0.0011 11 7 5.0760 -4.6728 -0.0011 12 6 6.5355 -4.4653 -0.0004 13 6 7.1203 -5.7625 0.6119 14 6 6.1694 -6.8402 0.0274 15 1 6.4779 -7.1214 -0.9796 16 7 6.1168 -8.0144 0.9017 17 6 5.6558 -7.8772 2.2856 18 6 6.4986 -9.2403 0.4257 19 1 7.1704 -9.3069 -0.4172 20 6 6.0221 -10.3973 1.0267 21 7 5.0040 -10.3356 1.8585 22 14 6.8259 -12.0420 0.6547 23 1 7.9234 -12.2872 1.6244 24 1 5.8149 -13.1238 0.7674 25 1 7.3783 -12.0224 -0.7236 26 6 4.8054 -6.1180 -0.0011 27 6 3.5821 -1.1985 0.0005 28 6 2.1779 -1.1868 -0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6397 2.1381 0.0004 33 1 4.0881 2.1701 0.0001 34 1 6.7959 -3.6043 0.6152 35 1 6.9014 -4.3277 -1.0180 36 1 8.1456 -5.9240 0.2790 37 1 7.0640 -5.7407 1.7002 38 1 4.5936 -8.1158 2.3400 39 1 6.2150 -8.5607 2.9244 40 1 5.8157 -6.8527 2.6219 41 1 4.6714 -11.1441 2.2787 42 1 4.2258 -6.3865 0.8821 43 1 4.2589 -6.3927 -0.9034 44 1 1.6298 -2.1174 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972075877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:48 Heat of formation + Delta-G solvation = 57.852369 kcal Electronic energy + Delta-G solvation = -27360.687800 eV Core-core repulsion = 23598.580942 eV Total energy + Delta-G solvation = -3762.106858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.79709 -39.41844 -37.58737 -37.05702 -34.78374 -32.88232 -31.68543 -31.02585 -29.75624 -28.19425 -27.29132 -26.17333 -25.91924 -23.70659 -22.83893 -22.28517 -21.34873 -19.40433 -19.16991 -18.71290 -17.20650 -17.05137 -16.38534 -15.94178 -15.60077 -15.41013 -15.09871 -14.65788 -14.46349 -14.06488 -13.95539 -13.66662 -13.33987 -13.28865 -12.72530 -12.61638 -12.51610 -12.27686 -12.21600 -12.06635 -12.00957 -11.72532 -11.64481 -11.02741 -10.92604 -10.90543 -10.77957 -10.51906 -10.48028 -10.24611 -9.94150 -9.86720 -9.78892 -9.75699 -9.21715 -8.57759 -8.38307 -8.01957 -6.80831 -5.76153 -3.24479 0.13904 0.80752 1.10787 1.46013 1.57929 3.06424 3.09300 3.37309 3.43563 3.44558 3.45029 4.05781 4.34363 4.46525 4.50328 4.74144 4.86068 5.03034 5.10768 5.11916 5.28612 5.29614 5.34757 5.40847 5.58386 5.66065 5.68007 5.71731 5.77045 5.83373 5.90036 5.94693 6.06662 6.12997 6.26260 6.35762 6.42069 6.53590 6.56703 6.66178 6.81067 6.88030 7.32402 7.70467 7.71622 7.77833 8.23019 8.35319 9.18114 9.80652 10.30167 11.27883 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.002473 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.650465 B =11317.525692 C =12298.469762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.089 4.089 4 C -0.072 4.072 5 C -0.202 4.202 6 S 0.365 5.635 7 N -0.478 5.478 8 C 0.101 3.899 9 C 0.592 3.408 10 O -0.532 6.532 11 N -0.589 5.589 12 C 0.103 3.897 13 C -0.155 4.155 14 C 0.173 3.827 15 H 0.079 0.921 16 N -0.585 5.585 17 C 0.159 3.841 18 C -0.262 4.262 19 H 0.071 0.929 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.907 3.093 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.087 3.913 27 C -0.083 4.083 28 C -0.042 4.042 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.042 0.958 40 H 0.002 0.998 41 H 0.254 0.746 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 26.178 -3.661 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.112 4.112 4 C -0.094 4.094 5 C -0.323 4.323 6 S 0.525 5.475 7 N -0.304 5.304 8 C -0.087 4.087 9 C 0.375 3.625 10 O -0.409 6.409 11 N -0.321 5.321 12 C -0.020 4.020 13 C -0.195 4.195 14 C 0.063 3.937 15 H 0.098 0.902 16 N -0.305 5.305 17 C 0.014 3.986 18 C -0.391 4.391 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.546 5.546 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.037 4.037 27 C -0.093 4.093 28 C -0.064 4.064 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.020 0.980 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.963 26.037 -3.542 26.294 hybrid contribution -1.313 -1.319 -0.125 1.865 sum -2.276 24.717 -3.667 25.091 Atomic orbital electron populations 1.20838 0.90309 1.03273 1.02761 1.19661 0.96833 0.92555 0.99878 1.20947 0.93648 0.97933 0.98666 1.19893 0.93754 0.95216 1.00546 1.24232 1.01546 0.97685 1.08823 1.81450 1.02661 0.95776 1.67621 1.71892 1.23333 1.15564 1.19592 1.21964 0.86478 0.95936 1.04331 1.16788 0.85036 0.82209 0.78430 1.90773 1.16311 1.82230 1.51614 1.48377 1.07222 1.07056 1.69448 1.22574 0.78960 0.99320 1.01173 1.23422 1.00184 0.94380 1.01525 1.21379 0.90315 0.87062 0.94987 0.90240 1.43920 1.75996 1.03340 1.07240 1.20794 0.99125 0.94357 0.84278 1.19216 1.21845 0.82505 1.15548 0.91168 1.25072 0.96427 0.98029 0.99883 1.70074 1.24163 1.27527 1.32870 0.86222 0.78484 0.83551 0.78055 1.21441 1.21732 1.20411 1.22992 1.01432 0.76751 1.02476 1.19563 0.95122 0.89821 1.04830 1.20724 0.90865 0.99220 0.95615 0.90802 0.90938 0.91282 0.84869 0.84849 0.89267 0.91684 0.90399 0.90698 0.94845 0.93942 0.97968 0.93596 0.90464 0.91727 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.98 36.01 0.36 -0.43 16 2 C -0.09 -0.83 5.84 -105.06 -0.61 -1.44 16 3 C -0.09 -0.70 9.63 -39.85 -0.38 -1.08 16 4 C -0.07 -0.61 10.03 -39.93 -0.40 -1.01 16 5 C -0.20 -2.24 6.73 -38.49 -0.26 -2.50 16 6 S 0.37 3.81 23.36 -107.50 -2.51 1.30 16 7 N -0.48 -6.55 7.67 28.25 0.22 -6.34 16 8 C 0.10 1.55 6.77 -81.99 -0.56 0.99 16 9 C 0.59 10.64 7.84 -12.54 -0.10 10.54 16 10 O -0.53 -10.66 15.34 5.26 0.08 -10.58 16 11 N -0.59 -10.47 3.33 -171.77 -0.57 -11.04 16 12 C 0.10 1.59 6.02 -2.53 -0.02 1.57 16 13 C -0.15 -2.61 6.61 -24.58 -0.16 -2.77 16 14 C 0.17 3.49 3.43 -66.08 -0.23 3.27 16 15 H 0.08 1.58 7.95 -51.93 -0.41 1.17 16 16 N -0.58 -14.38 2.93 -171.37 -0.50 -14.89 16 17 C 0.16 3.90 7.51 59.85 0.45 4.35 16 18 C -0.26 -7.05 9.59 -15.06 -0.14 -7.19 16 19 H 0.07 1.83 7.87 -52.49 -0.41 1.42 16 20 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 21 N -0.90 -26.19 10.79 55.49 0.60 -25.59 16 22 Si 0.91 21.65 29.58 -169.99 -5.03 16.62 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.09 1.74 6.50 -3.04 -0.02 1.72 16 27 C -0.08 -1.13 6.10 -105.09 -0.64 -1.77 16 28 C -0.04 -0.53 9.17 -39.45 -0.36 -0.89 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 31 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.09 1.32 6.00 -51.93 -0.31 1.01 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.34 6.45 -51.93 -0.34 1.01 16 38 H 0.03 0.90 7.24 -51.93 -0.38 0.52 16 39 H 0.04 1.11 7.39 -51.93 -0.38 0.73 16 40 H 0.00 0.04 6.47 -51.93 -0.34 -0.30 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.08 1.73 6.84 -51.93 -0.36 1.37 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.15 2.01 6.64 -52.49 -0.35 1.66 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -31.45 367.11 -11.13 -42.57 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.78 Total: -1.02 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -3.16 Total: 3.43 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.26 Total: -57.85 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -2.51 Total: 1.30 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.45 -11.13 -42.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972075877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.424 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds