Wall clock time and date at job start Wed Apr 1 2020 03:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.91476 * 2 1 4 4 C 1.54906 * 111.00507 * 123.90240 * 2 1 3 5 5 N 1.47430 * 104.82878 * 155.08539 * 4 2 1 6 6 C 1.36932 * 125.64879 * 155.89684 * 5 4 2 7 7 H 1.08008 * 120.00035 * 353.92642 * 6 5 4 8 8 C 1.38816 * 120.00432 * 173.92966 * 6 5 4 9 9 N 1.31620 * 119.99630 * 6.83687 * 8 6 5 10 10 Si 1.86798 * 120.00071 * 186.84234 * 8 6 5 11 11 H 1.48501 * 109.47283 * 94.98479 * 10 8 6 12 12 H 1.48503 * 109.46879 * 214.98026 * 10 8 6 13 13 H 1.48498 * 109.47381 * 334.98199 * 10 8 6 14 14 C 1.47014 * 108.70368 * 335.87085 * 5 4 2 15 15 C 1.54322 * 107.27361 * 1.06038 * 14 5 4 16 16 H 1.09006 * 110.72486 * 140.55451 * 15 14 5 17 17 N 1.46503 * 110.72115 * 263.82930 * 15 14 5 18 18 C 1.34780 * 120.00018 * 273.54161 * 17 15 14 19 19 O 1.21620 * 119.99599 * 0.02562 * 18 17 15 20 20 C 1.47170 * 119.99724 * 180.02562 * 18 17 15 21 21 C 1.33717 * 124.66786 * 179.72191 * 20 18 17 22 22 C 1.40432 * 115.60935 * 179.82772 * 21 20 18 23 23 N 1.34866 * 128.52687 * 180.18828 * 22 21 20 24 24 C 1.30760 * 122.22714 * 180.28233 * 23 22 21 25 25 C 1.38966 * 121.42388 * 0.02562 * 24 23 22 26 26 C 1.37861 * 119.17120 * 359.96864 * 25 24 23 27 27 C 1.39984 * 112.46549 * 0.44888 * 22 21 20 28 28 S 1.75510 * 124.67045 * 0.02618 * 20 18 17 29 29 H 1.09004 * 109.46855 * 297.54934 * 1 2 3 30 30 H 1.08997 * 109.47483 * 57.54770 * 1 2 3 31 31 H 1.08999 * 109.47376 * 177.55111 * 1 2 3 32 32 H 1.08997 * 109.47190 * 182.44927 * 3 2 1 33 33 H 1.08999 * 109.47597 * 302.45276 * 3 2 1 34 34 H 1.09007 * 109.47175 * 62.45380 * 3 2 1 35 35 H 1.08994 * 110.36732 * 36.24893 * 4 2 1 36 36 H 1.08995 * 110.37062 * 273.91819 * 4 2 1 37 37 H 0.97001 * 119.99594 * 180.02562 * 9 8 6 38 38 H 1.09004 * 109.88664 * 120.48064 * 14 5 4 39 39 H 1.09003 * 109.88651 * 241.48864 * 14 5 4 40 40 H 0.97001 * 119.99416 * 93.55022 * 17 15 14 41 41 H 1.07997 * 122.19407 * 0.02562 * 21 20 18 42 42 H 1.07996 * 119.28092 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.41231 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.68717 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 3.4272 -1.2430 0.7732 6 6 4.4641 -1.5664 1.6069 7 1 4.3667 -1.4185 2.6724 8 6 5.6406 -2.0843 1.0829 9 7 5.8121 -2.1392 -0.2209 10 14 6.9803 -2.7032 2.2281 11 1 6.8342 -4.1693 2.4141 12 1 8.3109 -2.4094 1.6376 13 1 6.8610 -2.0231 3.5427 14 6 3.4674 -1.2740 -0.6961 15 6 2.0861 -0.8078 -1.2023 16 1 2.1920 -0.1698 -2.0797 17 7 1.2268 -1.9574 -1.4963 18 6 1.2806 -2.5467 -2.7072 19 8 2.0429 -2.1245 -3.5556 20 6 0.4169 -3.7011 -3.0027 21 6 0.3900 -4.3518 -4.1706 22 6 -0.5054 -5.4311 -4.2436 23 7 -0.7397 -6.2595 -5.2818 24 6 -1.6133 -7.2302 -5.2160 25 6 -2.3537 -7.4616 -4.0630 26 6 -2.1607 -6.6492 -2.9661 27 6 -1.2203 -5.6145 -3.0542 28 16 -0.7250 -4.4087 -1.8732 29 1 -0.3633 0.4753 0.9112 30 1 -0.3634 0.5514 -0.8671 31 1 -0.3634 -1.0267 -0.0439 32 1 3.1649 1.4021 -0.0439 33 1 1.6908 1.9655 -0.8671 34 1 1.7619 1.9383 0.9112 35 1 1.4519 -1.6704 1.4024 36 1 2.1561 -0.1721 2.0836 37 1 6.6340 -2.5015 -0.5871 38 1 4.2426 -0.5996 -1.0601 39 1 3.6677 -2.2887 -1.0402 40 1 0.6190 -2.2942 -0.8194 41 1 1.0182 -4.0679 -5.0020 42 1 -1.7632 -7.8651 -6.0766 43 1 -3.0714 -8.2679 -4.0268 44 1 -2.7225 -6.8073 -2.0574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974902981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:08 Heat of formation + Delta-G solvation = 30.419990 kcal Electronic energy + Delta-G solvation = -27642.430411 eV Core-core repulsion = 23879.133995 eV Total energy + Delta-G solvation = -3763.296415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60831 -41.20808 -39.59276 -36.62992 -35.77296 -34.64945 -33.53178 -32.63336 -31.24834 -29.77709 -28.13778 -27.46399 -26.33767 -25.26968 -24.75436 -23.03897 -21.98149 -21.50547 -20.30053 -19.47128 -18.71329 -18.18261 -17.74168 -17.27934 -16.88136 -16.66603 -16.20138 -15.94391 -15.67577 -15.57449 -15.42441 -15.23455 -14.79677 -14.28295 -14.06164 -13.95358 -13.82303 -13.50503 -13.31260 -13.20490 -13.00556 -12.90157 -12.75691 -12.70713 -12.59510 -12.32799 -12.12298 -11.88799 -11.77060 -11.56766 -11.53731 -11.37187 -11.34040 -10.74089 -10.52225 -10.23350 -9.82347 -9.15617 -8.89665 -7.85563 -5.21177 -0.98994 0.02620 0.12168 0.55409 0.71516 1.43229 1.45267 1.54446 1.80146 1.96318 2.48224 2.69345 3.06454 3.33137 3.43530 3.51590 3.62409 3.71054 3.82479 3.92747 3.99099 4.02778 4.34426 4.35627 4.47074 4.48674 4.55825 4.61406 4.71922 4.81431 4.86981 4.93045 4.93570 4.99634 5.04636 5.09265 5.15646 5.22175 5.33049 5.45396 5.53676 5.55888 5.63559 5.71621 6.16257 6.30174 6.80314 6.95604 7.07161 7.76555 8.41370 9.24264 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.003139 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.432417 B = 8919.020487 C = 9909.809894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.137 3.863 5 N -0.619 5.619 6 C -0.236 4.236 7 H 0.089 0.911 8 C -0.069 4.069 9 N -0.952 5.952 10 Si 0.976 3.024 11 H -0.290 1.290 12 H -0.300 1.300 13 H -0.262 1.262 14 C 0.191 3.809 15 C 0.136 3.864 16 H 0.084 0.916 17 N -0.690 5.690 18 C 0.581 3.419 19 O -0.564 6.564 20 C -0.221 4.221 21 C -0.046 4.046 22 C 0.084 3.916 23 N -0.486 5.486 24 C 0.119 3.881 25 C -0.131 4.131 26 C -0.044 4.044 27 C -0.197 4.197 28 S 0.190 5.810 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.029 0.971 36 H 0.053 0.947 37 H 0.243 0.757 38 H 0.006 0.994 39 H 0.003 0.997 40 H 0.406 0.594 41 H 0.146 0.854 42 H 0.199 0.801 43 H 0.194 0.806 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.661 -7.207 -3.395 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.076 4.076 3 C -0.180 4.180 4 C 0.012 3.988 5 N -0.345 5.345 6 C -0.365 4.365 7 H 0.106 0.894 8 C -0.262 4.262 9 N -0.601 5.601 10 Si 0.805 3.195 11 H -0.218 1.218 12 H -0.227 1.227 13 H -0.186 1.186 14 C 0.065 3.935 15 C 0.030 3.970 16 H 0.102 0.898 17 N -0.341 5.341 18 C 0.367 3.633 19 O -0.444 6.444 20 C -0.342 4.342 21 C -0.080 4.080 22 C -0.047 4.047 23 N -0.196 5.196 24 C -0.052 4.052 25 C -0.154 4.154 26 C -0.073 4.073 27 C -0.315 4.315 28 S 0.456 5.544 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.024 0.976 39 H 0.021 0.979 40 H 0.244 0.756 41 H 0.164 0.836 42 H 0.216 0.784 43 H 0.211 0.789 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -23.749 -6.323 -3.159 24.778 hybrid contribution 1.588 -0.905 -0.345 1.860 sum -22.161 -7.228 -3.505 23.572 Atomic orbital electron populations 1.21693 0.90823 1.02249 1.03688 1.22016 0.97329 0.95488 0.92720 1.21591 0.99984 0.93480 1.02982 1.21917 0.85437 0.95538 0.95920 1.44669 1.09116 1.79190 1.01575 1.19471 0.92612 1.34152 0.90232 0.89357 1.25703 1.00924 1.02329 0.97259 1.70245 1.26467 1.51956 1.11401 0.85087 0.78036 0.78008 0.78408 1.21756 1.22674 1.18591 1.21103 0.91692 0.96848 0.83897 1.22211 0.90151 0.86388 0.98229 0.89771 1.45730 1.42153 1.32642 1.13563 1.17370 0.81530 0.81808 0.82578 1.90805 1.40472 1.64938 1.48162 1.23632 1.06607 1.03527 1.00420 1.19933 0.97359 0.92997 0.97714 1.18741 0.97963 0.96976 0.90985 1.67590 1.18195 1.04890 1.28917 1.23567 0.89424 0.92606 0.99623 1.22730 1.00321 1.00265 0.92101 1.21467 0.93881 0.90618 1.01377 1.24128 1.04694 1.04023 0.98705 1.83748 1.34077 1.24438 1.12174 0.89766 0.91235 0.92420 0.95049 0.91152 0.90243 0.95279 0.92864 0.94808 0.97578 0.97898 0.75573 0.83629 0.78396 0.78857 0.80727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 8.35 71.98 0.60 -2.16 16 2 C -0.07 -2.32 0.83 -50.79 -0.04 -2.37 16 3 C -0.12 -3.66 8.61 71.98 0.62 -3.05 16 4 C 0.14 5.19 6.14 86.85 0.53 5.72 16 5 N -0.62 -31.60 3.38 -692.00 -2.34 -33.94 16 6 C -0.24 -13.23 10.26 84.04 0.86 -12.37 16 7 H 0.09 4.66 7.84 -2.91 -0.02 4.63 16 8 C -0.07 -4.07 5.48 84.86 0.47 -3.60 16 9 N -0.95 -60.57 10.36 21.65 0.22 -60.34 16 10 Si 0.98 47.11 29.56 68.60 2.03 49.13 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 12 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 14 C 0.19 10.03 4.73 86.73 0.41 10.44 16 15 C 0.14 5.34 2.51 46.18 0.12 5.46 16 16 H 0.08 3.45 7.61 -2.38 -0.02 3.43 16 17 N -0.69 -24.27 4.54 -440.42 -2.00 -26.27 16 18 C 0.58 22.39 7.80 86.59 0.68 23.07 16 19 O -0.56 -26.42 16.46 -4.09 -0.07 -26.49 16 20 C -0.22 -7.03 6.33 23.59 0.15 -6.88 16 21 C -0.05 -1.47 9.82 21.78 0.21 -1.26 16 22 C 0.08 2.30 6.95 39.64 0.28 2.58 16 23 N -0.49 -11.98 10.41 -189.84 -1.98 -13.95 16 24 C 0.12 1.72 11.15 85.03 0.95 2.67 16 25 C -0.13 -1.21 10.11 22.36 0.23 -0.99 16 26 C -0.04 -0.57 10.19 22.63 0.23 -0.34 16 27 C -0.20 -4.29 6.51 23.14 0.15 -4.14 16 28 S 0.19 4.31 22.26 -56.49 -1.26 3.06 16 29 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.17 6.17 -2.39 -0.01 1.15 16 32 H 0.03 1.16 7.81 -2.39 -0.02 1.15 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.03 1.05 8.04 -2.39 -0.02 1.03 16 36 H 0.05 1.92 8.05 -2.39 -0.02 1.90 16 37 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.01 0.37 7.55 -2.39 -0.02 0.35 16 39 H 0.00 0.17 7.27 -2.39 -0.02 0.16 16 40 H 0.41 12.02 5.88 -92.71 -0.54 11.47 16 41 H 0.15 4.92 7.96 -2.91 -0.02 4.90 16 42 H 0.20 1.29 8.06 -2.91 -0.02 1.26 16 43 H 0.19 -0.03 8.06 -2.91 -0.02 -0.05 16 44 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -82.24 373.28 1.53 -80.70 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.49 Total: 15.31 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 6.44 Total: 12.79 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -6.09 Total: -134.51 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.07 Total: -26.49 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.26 Total: 3.06 kcal Total: -82.24 1.53 -80.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974902981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.123 kcal (2) G-P(sol) polarization free energy of solvation -82.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds