Wall clock time and date at job start Wed Apr 1 2020 03:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.88493 * 2 1 4 4 C 1.54909 * 111.00623 * 123.87989 * 2 1 3 5 5 N 1.47429 * 104.83054 * 81.06511 * 4 2 1 6 6 C 1.36939 * 125.64625 * 203.86538 * 5 4 2 7 7 H 1.07997 * 119.99591 * 354.66315 * 6 5 4 8 8 C 1.38813 * 119.99732 * 174.66899 * 6 5 4 9 9 N 1.31615 * 120.00275 * 7.02877 * 8 6 5 10 10 Si 1.86799 * 119.99623 * 187.02776 * 8 6 5 11 11 H 1.48500 * 109.47076 * 94.98809 * 10 8 6 12 12 H 1.48498 * 109.46809 * 214.98525 * 10 8 6 13 13 H 1.48499 * 109.47087 * 334.98434 * 10 8 6 14 14 C 1.47020 * 108.70230 * 24.13111 * 5 4 2 15 15 C 1.54322 * 107.27467 * 358.93934 * 14 5 4 16 16 H 1.08996 * 110.72497 * 219.44713 * 15 14 5 17 17 N 1.46494 * 110.87180 * 96.23851 * 15 14 5 18 18 C 1.34774 * 120.00191 * 91.39543 * 17 15 14 19 19 O 1.21596 * 119.99847 * 359.97438 * 18 17 15 20 20 C 1.47555 * 120.00728 * 180.02562 * 18 17 15 21 21 C 1.40122 * 120.58556 * 359.71686 * 20 18 17 22 22 N 1.30616 * 121.17385 * 179.76703 * 21 20 18 23 23 C 1.34908 * 122.44246 * 0.50613 * 22 21 20 24 24 C 1.40616 * 128.46012 * 179.73931 * 23 22 21 25 25 C 1.32276 * 115.91573 * 180.02562 * 24 23 22 26 26 S 1.75507 * 110.83574 * 0.02562 * 25 24 23 27 27 C 1.40101 * 119.27703 * 359.76541 * 23 22 21 28 28 C 1.39370 * 119.74703 * 359.97438 * 27 23 22 29 29 H 1.08999 * 109.47283 * 297.57308 * 1 2 3 30 30 H 1.09000 * 109.47140 * 57.57348 * 1 2 3 31 31 H 1.09002 * 109.46590 * 177.56779 * 1 2 3 32 32 H 1.08995 * 109.47047 * 182.42512 * 3 2 1 33 33 H 1.09001 * 109.47244 * 302.42895 * 3 2 1 34 34 H 1.09004 * 109.47266 * 62.42533 * 3 2 1 35 35 H 1.09002 * 110.36770 * 322.23109 * 4 2 1 36 36 H 1.08999 * 110.46101 * 199.95453 * 4 2 1 37 37 H 0.96992 * 120.00186 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.88144 * 118.35838 * 14 5 4 39 39 H 1.09003 * 109.87966 * 239.52320 * 14 5 4 40 40 H 0.96999 * 120.00639 * 271.38880 * 17 15 14 41 41 H 1.08000 * 119.41482 * 0.02562 * 21 20 18 42 42 H 1.08008 * 122.04102 * 0.02792 * 24 23 22 43 43 H 1.08002 * 124.58106 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.72815 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 2.0140 -2.2156 0.7741 6 6 1.9506 -3.2996 1.6084 7 1 2.0370 -3.1647 2.6765 8 6 1.7753 -4.5718 1.0813 9 7 1.8087 -4.7546 -0.2216 10 14 1.4923 -6.0242 2.2214 11 1 0.0339 -6.2665 2.3617 12 1 2.1425 -7.2327 1.6542 13 1 2.0754 -5.7280 3.5546 14 6 2.0286 -2.2649 -0.6952 15 6 2.0862 -0.8084 -1.2020 16 1 1.4525 -0.6799 -2.0794 17 7 3.4653 -0.4131 -1.4987 18 6 3.9626 -0.5821 -2.7399 19 8 3.2667 -1.0631 -3.6133 20 6 5.3518 -0.1846 -3.0387 21 6 6.1631 0.3753 -2.0428 22 7 7.3957 0.7271 -2.2935 23 6 7.9552 0.5850 -3.5129 24 6 9.2573 0.9227 -3.9224 25 6 9.5474 0.6751 -5.1890 26 16 8.1702 -0.0281 -6.0190 27 6 7.1964 0.0365 -4.5551 28 6 5.8794 -0.3543 -4.3202 29 1 -0.3634 0.4757 0.9109 30 1 -0.3633 0.5511 -0.8674 31 1 -0.3632 -1.0268 -0.0436 32 1 3.1642 1.4029 -0.0435 33 1 1.6901 1.9654 -0.8674 34 1 1.7605 1.9386 0.9110 35 1 1.4673 -0.6454 2.0839 36 1 3.1180 -0.5233 1.4045 37 1 1.6859 -5.6435 -0.5899 38 1 2.9065 -2.8120 -1.0390 39 1 1.1219 -2.7483 -1.0589 40 1 4.0206 -0.0297 -0.8019 41 1 5.7634 0.5146 -1.0492 42 1 9.9766 1.3575 -3.2442 43 1 10.5028 0.8782 -5.6500 44 1 5.2801 -0.7785 -5.1122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974903555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:46 Heat of formation + Delta-G solvation = 32.066000 kcal Electronic energy + Delta-G solvation = -27756.829195 eV Core-core repulsion = 23993.604156 eV Total energy + Delta-G solvation = -3763.225039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.93517 -40.90395 -39.39245 -36.74420 -35.73055 -34.59235 -33.69295 -32.60515 -31.29522 -29.60118 -28.05228 -27.41082 -26.26509 -25.27776 -24.58095 -22.95357 -22.10775 -21.47248 -20.40175 -19.45613 -18.68936 -18.15159 -17.85866 -17.27963 -16.96262 -16.69094 -16.19689 -15.76725 -15.58749 -15.43221 -15.24375 -15.03791 -14.75387 -14.38959 -14.08641 -13.98199 -13.78349 -13.62215 -13.42543 -13.12984 -12.98630 -12.87044 -12.78487 -12.70175 -12.56009 -12.11232 -12.10319 -11.86184 -11.75514 -11.63398 -11.53566 -11.35184 -11.28628 -10.72911 -10.59793 -10.13863 -9.82726 -9.07978 -8.87142 -7.84000 -5.18757 -0.97302 -0.15239 0.27719 0.81054 0.83915 1.44581 1.46414 1.55172 1.81557 2.04070 2.49743 2.64623 2.92721 3.34546 3.45459 3.49200 3.54822 3.63104 3.75093 3.91219 3.97421 4.01855 4.10438 4.37899 4.40894 4.52001 4.62729 4.69171 4.75887 4.86739 4.89853 4.90941 4.98016 5.04041 5.05653 5.14258 5.18807 5.25919 5.28791 5.37567 5.48468 5.58134 5.70008 5.73754 6.18857 6.44081 6.58142 7.07850 7.12331 7.79148 8.43602 9.25805 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.002847 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.986162 B = 9834.204324 C =10747.454423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.136 3.864 5 N -0.619 5.619 6 C -0.234 4.234 7 H 0.087 0.913 8 C -0.068 4.068 9 N -0.951 5.951 10 Si 0.974 3.026 11 H -0.289 1.289 12 H -0.301 1.301 13 H -0.264 1.264 14 C 0.191 3.809 15 C 0.137 3.863 16 H 0.083 0.917 17 N -0.689 5.689 18 C 0.564 3.436 19 O -0.576 6.576 20 C -0.189 4.189 21 C 0.164 3.836 22 N -0.475 5.475 23 C 0.133 3.867 24 C -0.141 4.141 25 C -0.137 4.137 26 S 0.144 5.856 27 C -0.234 4.234 28 C 0.024 3.976 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.033 0.967 37 H 0.243 0.757 38 H -0.002 1.002 39 H 0.011 0.989 40 H 0.409 0.591 41 H 0.186 0.814 42 H 0.174 0.826 43 H 0.220 0.780 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.682 18.099 -8.069 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.183 4.183 4 C 0.011 3.989 5 N -0.346 5.346 6 C -0.363 4.363 7 H 0.105 0.895 8 C -0.261 4.261 9 N -0.601 5.601 10 Si 0.803 3.197 11 H -0.216 1.216 12 H -0.228 1.228 13 H -0.188 1.188 14 C 0.064 3.936 15 C 0.032 3.968 16 H 0.101 0.899 17 N -0.341 5.341 18 C 0.352 3.648 19 O -0.457 6.457 20 C -0.197 4.197 21 C -0.008 4.008 22 N -0.183 5.183 23 C -0.001 4.001 24 C -0.170 4.170 25 C -0.274 4.274 26 S 0.408 5.592 27 C -0.351 4.351 28 C -0.006 4.006 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.016 0.984 39 H 0.029 0.971 40 H 0.248 0.752 41 H 0.203 0.797 42 H 0.192 0.808 43 H 0.237 0.763 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.565 17.448 -9.541 24.073 hybrid contribution -0.575 -1.492 1.419 2.138 sum 12.990 15.956 -8.123 22.121 Atomic orbital electron populations 1.21591 0.92773 1.00984 1.02756 1.21990 0.96736 0.95820 0.92953 1.21675 1.00944 0.92414 1.03288 1.21928 0.97836 0.83204 0.95890 1.44674 1.86686 1.01562 1.01649 1.19455 1.41338 0.85582 0.89971 0.89522 1.25661 1.02881 1.00356 0.97234 1.70227 1.57480 1.20982 1.11363 0.85113 0.77437 0.78752 0.78396 1.21576 1.22794 1.18846 1.21115 0.97286 0.91343 0.83829 1.22140 0.82002 0.94719 0.97984 0.89906 1.45716 1.14539 1.62896 1.10904 1.18126 0.86359 0.77714 0.82646 1.90770 1.61182 1.46201 1.47572 1.20745 0.95248 1.07358 0.96366 1.23105 0.88054 0.90554 0.99105 1.67636 1.12404 1.17781 1.20515 1.19837 0.95227 0.96255 0.88777 1.19865 0.94322 1.05337 0.97507 1.25969 1.03842 1.00933 0.96618 1.84350 1.03078 1.64298 1.07509 1.23759 0.99669 1.09987 1.01699 1.21064 0.92032 0.91121 0.96352 0.90505 0.91337 0.95153 0.91855 0.91571 0.90219 0.93173 0.94921 0.94795 0.98391 0.97120 0.75203 0.79682 0.80830 0.76298 0.83398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.69 8.60 71.98 0.62 -3.07 16 2 C -0.07 -2.25 0.83 -50.79 -0.04 -2.29 16 3 C -0.13 -2.64 8.35 71.98 0.60 -2.04 16 4 C 0.14 5.04 6.13 86.85 0.53 5.57 16 5 N -0.62 -30.99 3.38 -691.98 -2.34 -33.33 16 6 C -0.23 -13.02 10.26 84.03 0.86 -12.15 16 7 H 0.09 4.55 7.84 -2.91 -0.02 4.52 16 8 C -0.07 -3.97 5.48 84.86 0.46 -3.51 16 9 N -0.95 -59.59 10.36 21.65 0.22 -59.37 16 10 Si 0.97 46.71 29.56 68.60 2.03 48.73 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 13 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 14 C 0.19 9.74 4.74 86.73 0.41 10.15 16 15 C 0.14 5.19 2.59 46.18 0.12 5.31 16 16 H 0.08 3.32 7.45 -2.39 -0.02 3.30 16 17 N -0.69 -22.35 4.38 -440.06 -1.93 -24.28 16 18 C 0.56 19.84 7.77 86.70 0.67 20.52 16 19 O -0.58 -24.93 16.05 -4.02 -0.06 -24.99 16 20 C -0.19 -5.49 5.89 -20.03 -0.12 -5.61 16 21 C 0.16 4.11 10.69 85.33 0.91 5.02 16 22 N -0.47 -12.15 10.39 -188.73 -1.96 -14.11 16 23 C 0.13 3.11 6.97 39.70 0.28 3.39 16 24 C -0.14 -2.21 10.16 21.79 0.22 -1.99 16 25 C -0.14 -1.50 11.08 66.76 0.74 -0.76 16 26 S 0.14 2.29 23.29 -56.49 -1.32 0.97 16 27 C -0.23 -5.53 6.49 22.99 0.15 -5.38 16 28 C 0.02 0.67 9.73 22.88 0.22 0.89 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.03 1.13 7.81 -2.39 -0.02 1.11 16 32 H 0.06 1.18 6.27 -2.39 -0.01 1.16 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.05 1.80 8.05 -2.39 -0.02 1.78 16 36 H 0.03 1.13 8.04 -2.39 -0.02 1.11 16 37 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.00 -0.13 7.53 -2.39 -0.02 -0.14 16 39 H 0.01 0.63 7.29 -2.39 -0.02 0.62 16 40 H 0.41 10.75 5.10 -92.71 -0.47 10.28 16 41 H 0.19 3.59 6.41 -2.91 -0.02 3.57 16 42 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.22 0.50 8.06 -2.91 -0.02 0.47 16 44 H 0.15 4.09 7.72 -2.91 -0.02 4.06 16 Total: -1.00 -77.89 371.00 1.85 -76.04 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.56 Total: 16.29 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 6.65 Total: 14.05 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -6.00 Total: -131.09 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.06 Total: -24.99 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.32 Total: 0.97 kcal Total: -77.89 1.85 -76.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974903555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.108 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds