Wall clock time and date at job start Wed Apr 1 2020 02:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 119.99953 * 2 1 4 4 H 1.48500 * 109.47097 * 269.99983 * 3 2 1 5 5 H 1.48500 * 109.47360 * 29.99618 * 3 2 1 6 6 H 1.48495 * 109.47262 * 150.00333 * 3 2 1 7 7 C 1.38811 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00249 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99972 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00223 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47637 * 34.99327 * 10 9 7 12 12 C 1.53004 * 109.46948 * 274.99614 * 10 9 7 13 13 C 1.53004 * 109.47336 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47160 * 59.99650 * 13 12 10 15 15 C 1.52995 * 109.47402 * 300.00418 * 14 13 12 16 16 H 1.08998 * 109.47336 * 299.99491 * 15 14 13 17 17 N 1.46507 * 109.47188 * 179.97438 * 15 14 13 18 18 C 1.34768 * 119.99889 * 84.99645 * 17 15 14 19 19 O 1.21594 * 120.00220 * 0.02562 * 18 17 15 20 20 C 1.47558 * 119.99971 * 180.02562 * 18 17 15 21 21 C 1.40117 * 120.59223 * 0.02562 * 20 18 17 22 22 N 1.30610 * 121.17947 * 179.97438 * 21 20 18 23 23 C 1.34913 * 122.44052 * 0.02562 * 22 21 20 24 24 C 1.40623 * 128.45751 * 179.97438 * 23 22 21 25 25 C 1.32276 * 115.90926 * 180.02562 * 24 23 22 26 26 S 1.75502 * 110.84057 * 0.02562 * 25 24 23 27 27 C 1.40097 * 119.27367 * 359.71879 * 23 22 21 28 28 C 1.39357 * 119.75149 * 0.55509 * 27 23 22 29 29 C 1.52998 * 109.47637 * 154.99667 * 10 9 7 30 30 H 0.97006 * 120.00480 * 359.97438 * 1 2 3 31 31 H 0.97006 * 120.00115 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47424 * 300.00101 * 12 10 9 33 33 H 1.08996 * 109.46814 * 60.00027 * 12 10 9 34 34 H 1.08997 * 109.47118 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.47246 * 300.00233 * 13 12 10 36 36 H 1.08998 * 109.47145 * 179.97438 * 14 13 12 37 37 H 1.09006 * 109.46564 * 60.00166 * 14 13 12 38 38 H 0.96997 * 119.99902 * 264.99998 * 17 15 14 39 39 H 1.07999 * 119.41173 * 359.97438 * 21 20 18 40 40 H 1.08006 * 122.04295 * 0.04687 * 24 23 22 41 41 H 1.08003 * 124.57809 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.73505 * 179.73019 * 28 27 23 43 43 H 1.09005 * 109.47283 * 59.99810 * 29 10 9 44 44 H 1.08997 * 109.47275 * 299.99928 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 2.0580 -3.6567 0.0027 11 1 2.9688 -3.5500 0.5920 12 6 2.4218 -4.0368 -1.4340 13 6 3.1873 -5.3616 -1.4329 14 6 2.3107 -6.4567 -0.8219 15 6 1.9469 -6.0766 0.6147 16 1 2.8576 -5.9694 1.2039 17 7 1.1070 -7.1249 1.1995 18 6 1.6767 -8.2065 1.7669 19 8 2.8878 -8.3121 1.7939 20 6 0.8308 -9.2627 2.3554 21 6 -0.5659 -9.1540 2.3306 22 7 -1.3256 -10.0822 2.8476 23 6 -0.8207 -11.1891 3.4307 24 6 -1.5143 -12.2594 4.0231 25 6 -0.7646 -13.2264 4.5257 26 16 0.9402 -12.8771 4.2981 27 6 0.5685 -11.3622 3.4841 28 6 1.4080 -10.3880 2.9471 29 6 1.1809 -4.7516 0.6134 30 1 -0.4851 0.8401 0.0004 31 1 0.3555 -2.3881 0.0023 32 1 1.5111 -4.1436 -2.0233 33 1 3.0466 -3.2569 -1.8690 34 1 3.4468 -5.6321 -2.4563 35 1 4.0981 -5.2544 -0.8436 36 1 2.8559 -7.4005 -0.8215 37 1 1.3999 -6.5638 -1.4111 38 1 0.1410 -7.0406 1.1782 39 1 -1.0225 -8.2873 1.8760 40 1 -2.5931 -12.2901 4.0648 41 1 -1.1496 -14.1113 5.0106 42 1 2.4812 -10.5032 2.9835 43 1 0.2701 -4.8584 0.0241 44 1 0.9217 -4.4808 1.6369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981276463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:28 Heat of formation + Delta-G solvation = 0.803498 kcal Electronic energy + Delta-G solvation = -26506.949464 eV Core-core repulsion = 22742.368781 eV Total energy + Delta-G solvation = -3764.580683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.89828 -40.73225 -39.24184 -36.74564 -36.28643 -34.88877 -33.69049 -32.93781 -31.59831 -30.22971 -29.27634 -26.22806 -25.68101 -24.94325 -23.41706 -23.09177 -22.24674 -21.46577 -20.91906 -19.70523 -19.02986 -18.21644 -17.80668 -17.31661 -17.04203 -16.46420 -16.30216 -15.99379 -15.51002 -15.42841 -15.23251 -15.02395 -14.98126 -14.83653 -14.37847 -14.21545 -13.98304 -13.65182 -13.56961 -13.39166 -12.90955 -12.83211 -12.78524 -12.26502 -12.15944 -12.11306 -12.02153 -11.96258 -11.66203 -11.62433 -11.60744 -11.38324 -11.11984 -10.86058 -10.57805 -10.19093 -9.83717 -9.08583 -8.98165 -7.92770 -5.20191 -0.97643 -0.13128 0.28398 0.80248 0.82988 1.48095 1.48776 1.57161 1.81542 1.96900 2.57437 2.64915 2.94670 3.40427 3.45682 3.51910 3.63349 3.65158 3.87934 3.92409 4.03124 4.05556 4.26505 4.32964 4.38014 4.45765 4.54633 4.59801 4.63891 4.68245 4.74237 4.78873 4.90309 5.02629 5.04302 5.12374 5.18506 5.24426 5.26710 5.37041 5.42870 5.52165 5.55215 5.67637 6.30063 6.42240 6.60658 7.07329 7.36506 8.12795 8.36177 9.30491 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022864 B = 0.001902 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.317534 B =14713.978958 C =15317.539774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.968 3.032 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.235 4.235 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.036 0.964 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.117 4.117 15 C 0.159 3.841 16 H 0.073 0.927 17 N -0.703 5.703 18 C 0.570 3.430 19 O -0.571 6.571 20 C -0.191 4.191 21 C 0.163 3.837 22 N -0.480 5.480 23 C 0.132 3.868 24 C -0.142 4.142 25 C -0.140 4.140 26 S 0.145 5.855 27 C -0.234 4.234 28 C 0.026 3.974 29 C -0.116 4.116 30 H 0.250 0.750 31 H 0.374 0.626 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.414 0.586 39 H 0.191 0.809 40 H 0.171 0.829 41 H 0.217 0.783 42 H 0.152 0.848 43 H 0.078 0.922 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -30.985 7.066 31.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.797 3.203 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.197 1.197 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.054 0.946 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.156 4.156 15 C 0.055 3.945 16 H 0.091 0.909 17 N -0.354 5.354 18 C 0.357 3.643 19 O -0.451 6.451 20 C -0.199 4.199 21 C -0.010 4.010 22 N -0.189 5.189 23 C -0.002 4.002 24 C -0.172 4.172 25 C -0.276 4.276 26 S 0.408 5.592 27 C -0.351 4.351 28 C -0.003 4.003 29 C -0.155 4.155 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.252 0.748 39 H 0.208 0.792 40 H 0.188 0.812 41 H 0.234 0.766 42 H 0.170 0.830 43 H 0.097 0.903 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.488 -31.718 7.535 32.605 hybrid contribution -0.726 2.158 -0.470 2.325 sum -1.214 -29.560 7.064 30.416 Atomic orbital electron populations 1.69796 1.06398 1.25891 1.59789 1.25488 0.96373 1.00829 1.04130 0.85218 0.77731 0.79966 0.77349 1.21547 1.22298 1.19685 1.19578 0.91312 0.85313 1.40541 0.90977 1.42569 1.05469 1.00773 1.88674 1.20311 0.93876 0.84740 0.94294 0.94554 1.22103 0.99677 0.96398 0.98538 1.21410 0.98088 0.93699 1.01285 1.21822 1.00629 0.98380 0.94724 1.20832 0.93738 0.85499 0.94473 0.90873 1.45868 1.11249 1.20091 1.58204 1.17987 0.87087 0.81784 0.77427 1.90783 1.15441 1.78934 1.59956 1.20770 0.95639 0.97265 1.06249 1.23222 0.88526 0.96708 0.92506 1.67640 1.39932 1.01351 1.09928 1.19791 0.89549 0.94222 0.96621 1.19874 1.03112 0.92308 1.01916 1.25951 0.95205 1.03832 1.02633 1.84379 1.06178 1.11936 1.56661 1.23767 0.98203 1.03379 1.09799 1.21099 1.00693 0.89269 0.89281 1.21904 0.99223 0.92819 1.01560 0.94117 0.79392 0.92720 0.94069 0.90609 0.92307 0.91882 0.90556 0.74848 0.79194 0.81170 0.76604 0.83011 0.90318 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 2 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.97 46.21 29.55 68.60 2.03 48.23 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.24 -12.95 9.93 84.03 0.83 -12.11 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.74 -36.02 5.12 -322.95 -1.65 -37.67 16 10 C 0.18 6.68 2.77 44.99 0.12 6.80 16 11 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 12 C -0.13 -4.28 5.50 30.60 0.17 -4.11 16 13 C -0.11 -2.80 5.92 30.59 0.18 -2.62 16 14 C -0.12 -2.82 5.49 30.59 0.17 -2.65 16 15 C 0.16 4.09 2.46 45.01 0.11 4.20 16 16 H 0.07 2.18 7.58 -2.39 -0.02 2.17 16 17 N -0.70 -14.86 5.03 -445.59 -2.24 -17.10 16 18 C 0.57 13.91 7.74 86.70 0.67 14.58 16 19 O -0.57 -17.98 16.07 -4.01 -0.06 -18.05 16 20 C -0.19 -3.98 5.89 -20.03 -0.12 -4.10 16 21 C 0.16 2.97 10.69 85.33 0.91 3.89 16 22 N -0.48 -9.95 10.39 -188.73 -1.96 -11.91 16 23 C 0.13 2.51 6.97 39.70 0.28 2.78 16 24 C -0.14 -1.79 10.16 21.79 0.22 -1.57 16 25 C -0.14 -1.10 11.08 66.76 0.74 -0.36 16 26 S 0.14 1.70 23.29 -56.49 -1.32 0.39 16 27 C -0.23 -4.29 6.49 22.99 0.15 -4.14 16 28 C 0.03 0.54 9.73 22.88 0.22 0.76 16 29 C -0.12 -3.43 4.86 30.61 0.15 -3.28 16 30 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 31 H 0.37 19.48 7.80 -92.70 -0.72 18.76 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.41 6.34 6.66 -92.71 -0.62 5.72 16 39 H 0.19 2.27 6.41 -2.91 -0.02 2.25 16 40 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 41 H 0.22 -0.02 8.06 -2.91 -0.02 -0.05 16 42 H 0.15 3.00 7.72 -2.91 -0.02 2.98 16 43 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -71.83 376.64 0.06 -71.77 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.29 Total: 28.47 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.28 Total: -5.81 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -5.57 Total: -125.00 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.06 Total: -18.05 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.32 Total: 0.39 kcal Total: -71.83 0.06 -71.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981276463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.578 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds