Wall clock time and date at job start Wed Apr 1 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99853 * 2 1 4 4 H 1.48495 * 109.47517 * 270.00181 * 3 2 1 5 5 H 1.48499 * 109.47053 * 30.00520 * 3 2 1 6 6 H 1.48505 * 109.46880 * 150.00142 * 3 2 1 7 7 C 1.38814 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99899 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99845 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.47463 * 324.99973 * 10 9 7 12 12 C 1.53004 * 109.46960 * 85.00719 * 10 9 7 13 13 C 1.53002 * 109.46899 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47005 * 299.99765 * 13 12 10 15 15 C 1.52992 * 109.47002 * 60.00073 * 14 13 12 16 16 H 1.09007 * 109.46657 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47272 * 60.00088 * 15 14 13 18 18 C 1.34778 * 120.00118 * 84.99946 * 17 15 14 19 19 O 1.21592 * 119.99780 * 359.97438 * 18 17 15 20 20 C 1.47557 * 120.00358 * 180.02562 * 18 17 15 21 21 C 1.40125 * 120.58706 * 359.97438 * 20 18 17 22 22 N 1.30609 * 121.17406 * 179.72675 * 21 20 18 23 23 C 1.34912 * 122.44262 * 359.97438 * 22 21 20 24 24 C 1.40620 * 128.45470 * 180.02562 * 23 22 21 25 25 C 1.32277 * 115.90849 * 180.02562 * 24 23 22 26 26 S 1.75505 * 110.83974 * 359.97438 * 25 24 23 27 27 C 1.40087 * 119.27536 * 0.02562 * 23 22 21 28 28 C 1.39361 * 119.75259 * 359.97438 * 27 23 22 29 29 C 1.53005 * 109.46592 * 205.00162 * 10 9 7 30 30 H 0.97004 * 120.00313 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00061 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47161 * 59.99895 * 12 10 9 33 33 H 1.08992 * 109.46501 * 299.99331 * 12 10 9 34 34 H 1.08997 * 109.46893 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.46966 * 59.99542 * 13 12 10 36 36 H 1.09002 * 109.46489 * 300.00147 * 14 13 12 37 37 H 1.08996 * 109.46776 * 180.02562 * 14 13 12 38 38 H 0.97002 * 120.00153 * 264.99086 * 17 15 14 39 39 H 1.08001 * 119.41025 * 359.70222 * 21 20 18 40 40 H 1.07997 * 122.04804 * 0.02562 * 24 23 22 41 41 H 1.08001 * 124.58189 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.73212 * 180.02562 * 28 27 23 43 43 H 1.08997 * 109.47220 * 60.00469 * 29 10 9 44 44 H 1.08998 * 109.47434 * 299.99776 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9688 -3.5505 -0.5899 12 6 2.4219 -4.0356 1.4365 13 6 3.1864 -5.3609 1.4366 14 6 2.3087 -6.4560 0.8270 15 6 1.9449 -6.0771 -0.6099 16 1 1.3200 -6.8575 -1.0443 17 7 3.1689 -5.9349 -1.4022 18 6 3.7350 -7.0190 -1.9685 19 8 3.2300 -8.1153 -1.8213 20 6 4.9682 -6.8759 -2.7660 21 6 5.5609 -5.6186 -2.9431 22 7 6.6552 -5.4795 -3.6424 23 6 7.2762 -6.5231 -4.2299 24 6 8.4501 -6.5192 -5.0041 25 6 8.8429 -7.6955 -5.4643 26 16 7.7430 -8.9644 -4.9542 27 6 6.7356 -7.8081 -4.0919 28 6 5.5687 -7.9917 -3.3524 29 6 1.1809 -4.7521 -0.6102 30 1 -0.4851 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 1.5111 -4.1419 2.0259 33 1 3.0467 -3.2553 1.8708 34 1 3.4459 -5.6306 2.4603 35 1 4.0970 -5.2550 0.8471 36 1 1.3980 -6.5618 1.4166 37 1 2.8532 -7.4002 0.8275 38 1 3.5720 -5.0603 -1.5194 39 1 5.1044 -4.7490 -2.4938 40 1 8.9976 -5.6114 -5.2104 41 1 9.7221 -7.8538 -6.0712 42 1 5.1385 -8.9753 -3.2354 43 1 0.9217 -4.4822 -1.6340 44 1 0.2702 -4.8584 -0.0208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981276466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:40 Heat of formation + Delta-G solvation = 24.744006 kcal Electronic energy + Delta-G solvation = -27197.701050 eV Core-core repulsion = 23434.158506 eV Total energy + Delta-G solvation = -3763.542544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05069 -39.84743 -37.99155 -36.02119 -34.57067 -33.17610 -32.84205 -31.20426 -30.67713 -29.20343 -27.88264 -25.42462 -24.15934 -23.73127 -22.36925 -22.02727 -21.16688 -20.83149 -19.04277 -18.76508 -17.47568 -17.05988 -16.97714 -16.42956 -15.63994 -15.42040 -15.18262 -14.65501 -14.52123 -14.41566 -14.32298 -13.72963 -13.58599 -13.46894 -13.22922 -13.06818 -12.96639 -12.51564 -12.15554 -12.04027 -11.91129 -11.76649 -11.52490 -11.01953 -10.90519 -10.83249 -10.80497 -10.43521 -10.30736 -10.21675 -10.20048 -9.77891 -9.68803 -9.55741 -9.21080 -8.98166 -8.87741 -8.43009 -6.99908 -5.79917 -3.09048 -0.19911 0.68365 0.94362 1.41169 1.53440 2.75341 3.04844 3.41666 3.47253 3.48562 3.51685 3.67067 4.22166 4.38776 4.48379 4.55047 4.64535 4.75431 4.94616 5.05760 5.10160 5.14127 5.29428 5.43967 5.46086 5.54344 5.57067 5.65570 5.69557 5.72446 5.83299 5.93574 6.02417 6.02797 6.07946 6.19393 6.25915 6.45456 6.52567 6.57766 6.68228 6.90337 7.05026 7.40825 7.45666 7.66425 8.08704 8.38312 9.49834 10.06752 10.41028 11.42555 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.002643 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.686925 B =10591.190950 C =12267.314289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.181 3.819 11 H 0.040 0.960 12 C -0.137 4.137 13 C -0.116 4.116 14 C -0.128 4.128 15 C 0.152 3.848 16 H 0.087 0.913 17 N -0.708 5.708 18 C 0.566 3.434 19 O -0.539 6.539 20 C -0.176 4.176 21 C 0.161 3.839 22 N -0.457 5.457 23 C 0.144 3.856 24 C -0.118 4.118 25 C -0.167 4.167 26 S 0.121 5.879 27 C -0.212 4.212 28 C 0.029 3.971 29 C -0.135 4.135 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.403 0.597 39 H 0.169 0.831 40 H 0.156 0.844 41 H 0.179 0.821 42 H 0.153 0.847 43 H 0.071 0.929 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.819 -19.004 -8.238 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.070 3.930 11 H 0.058 0.942 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.048 3.952 16 H 0.105 0.895 17 N -0.360 5.360 18 C 0.352 3.648 19 O -0.418 6.418 20 C -0.185 4.185 21 C -0.011 4.011 22 N -0.165 5.165 23 C 0.010 3.990 24 C -0.148 4.148 25 C -0.303 4.303 26 S 0.384 5.616 27 C -0.329 4.329 28 C -0.001 4.001 29 C -0.174 4.174 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.240 0.760 39 H 0.186 0.814 40 H 0.174 0.826 41 H 0.196 0.804 42 H 0.171 0.829 43 H 0.089 0.911 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.987 -20.363 -8.550 26.690 hybrid contribution 0.063 2.173 0.346 2.201 sum 15.051 -18.190 -8.205 24.994 Atomic orbital electron populations 1.69655 1.05116 1.25690 1.57551 1.24737 0.95489 0.97691 1.02935 0.86225 0.78690 0.83947 0.77541 1.21699 1.21821 1.20742 1.19212 0.90946 0.84074 1.42854 0.91188 1.42414 1.05791 0.99656 1.88584 1.20144 0.93839 0.86024 0.92951 0.94188 1.22296 0.99843 0.95171 1.00468 1.21515 0.98443 0.95644 0.99830 1.21903 1.00711 0.98633 0.95363 1.21018 0.84751 0.98638 0.90832 0.89499 1.46135 1.28074 1.10054 1.51771 1.17784 0.83242 0.84769 0.79037 1.90777 1.63674 1.25727 1.61602 1.20952 0.98781 0.95152 1.03588 1.22968 0.89953 0.96021 0.92171 1.67619 1.08944 1.31904 1.08002 1.19293 0.95098 0.87896 0.96665 1.19688 0.95988 0.99681 0.99462 1.25438 1.04205 0.95622 1.05054 1.84338 1.18695 1.08222 1.50325 1.23552 1.02647 0.98890 1.07812 1.20968 0.89966 0.99746 0.89406 1.22143 0.99365 0.93433 1.02409 0.93498 0.78223 0.92487 0.91999 0.92771 0.92667 0.90957 0.92026 0.75955 0.81377 0.82643 0.80412 0.82949 0.91076 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 9 N -0.72 -17.00 5.12 -53.42 -0.27 -17.27 16 10 C 0.18 3.21 2.60 -67.93 -0.18 3.03 16 11 H 0.04 0.70 6.44 -51.93 -0.33 0.36 16 12 C -0.14 -2.27 5.50 -26.73 -0.15 -2.42 16 13 C -0.12 -1.55 5.77 -26.73 -0.15 -1.71 16 14 C -0.13 -1.62 5.60 -26.73 -0.15 -1.77 16 15 C 0.15 1.99 2.78 -67.96 -0.19 1.80 16 16 H 0.09 1.17 7.58 -51.92 -0.39 0.78 16 17 N -0.71 -8.76 4.19 -54.86 -0.23 -8.99 16 18 C 0.57 7.44 7.74 -12.46 -0.10 7.35 16 19 O -0.54 -8.50 16.07 5.28 0.08 -8.41 16 20 C -0.18 -2.08 5.89 -104.87 -0.62 -2.69 16 21 C 0.16 1.85 10.69 -17.36 -0.19 1.67 16 22 N -0.46 -5.71 10.39 -11.01 -0.11 -5.83 16 23 C 0.14 1.63 6.96 -84.92 -0.59 1.03 16 24 C -0.12 -1.00 10.16 -40.61 -0.41 -1.41 16 25 C -0.17 -1.07 11.08 28.81 0.32 -0.75 16 26 S 0.12 0.92 23.29 -107.50 -2.50 -1.59 16 27 C -0.21 -2.22 6.49 -38.47 -0.25 -2.47 16 28 C 0.03 0.32 9.73 -38.65 -0.38 -0.05 16 29 C -0.13 -2.01 5.07 -26.75 -0.14 -2.14 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.38 9.71 7.80 -40.82 -0.32 9.39 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.72 7.60 -51.93 -0.39 0.33 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.66 4.92 -40.82 -0.20 4.46 16 39 H 0.17 1.63 6.41 -52.49 -0.34 1.30 16 40 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 41 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.15 1.55 7.72 -52.48 -0.41 1.15 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -31.86 372.20 -10.87 -42.73 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.73 Total: 11.10 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -3.41 Total: -7.48 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.11 Total: -58.85 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.86 -10.87 -42.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981276466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.475 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds