Wall clock time and date at job start Wed Apr 1 2020 03:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38909 * 119.47819 * 2 1 4 4 C 1.36802 * 120.30387 * 179.97438 * 3 2 1 5 5 C 1.38696 * 119.62937 * 359.97438 * 4 3 2 6 6 S 1.76256 * 134.18582 * 179.97438 * 5 4 3 7 7 N 1.55993 * 97.56135 * 180.02562 * 6 5 4 8 8 C 1.29681 * 111.74673 * 0.02562 * 7 6 5 9 9 C 1.47382 * 121.83158 * 179.97438 * 8 7 6 10 10 O 1.21622 * 120.00128 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00120 * 0.02562 * 9 8 7 12 12 C 1.47426 * 125.64780 * 359.68845 * 11 9 8 13 13 C 1.54689 * 104.94418 * 204.07576 * 12 11 9 14 14 C 1.55155 * 101.67498 * 323.27833 * 13 12 11 15 15 H 1.08998 * 110.71947 * 276.96810 * 14 13 12 16 16 N 1.46500 * 110.72140 * 153.69887 * 14 13 12 17 17 C 1.36936 * 119.99950 * 91.47270 * 16 14 13 18 18 H 1.07989 * 120.00400 * 0.02562 * 17 16 14 19 19 C 1.38824 * 119.99659 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99658 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47029 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46942 * 120.00209 * 21 19 17 24 24 H 1.48493 * 109.47050 * 240.00014 * 21 19 17 25 25 C 1.47020 * 125.64949 * 180.02562 * 11 9 8 26 26 H 1.08997 * 109.88354 * 59.32851 * 25 11 9 27 27 C 1.52999 * 109.88092 * 298.31509 * 25 11 9 28 28 C 1.40673 * 120.66789 * 0.02562 * 5 4 3 29 29 C 1.36324 * 119.48334 * 179.72740 * 2 1 3 30 30 H 1.08999 * 109.47015 * 90.00341 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99493 * 1 2 3 32 32 H 1.09000 * 109.47248 * 330.00211 * 1 2 3 33 33 H 1.07994 * 119.84733 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.18377 * 179.97438 * 4 3 2 35 35 H 1.09002 * 110.36783 * 323.01034 * 12 11 9 36 36 H 1.09000 * 110.36686 * 85.32627 * 12 11 9 37 37 H 1.09002 * 111.10394 * 205.10785 * 13 12 11 38 38 H 1.09006 * 110.81350 * 81.32334 * 13 12 11 39 39 H 0.96999 * 119.99883 * 271.48217 * 16 14 13 40 40 H 0.96998 * 119.99663 * 179.97438 * 20 19 17 41 41 H 1.09007 * 109.47044 * 61.45781 * 27 25 11 42 42 H 1.09004 * 109.47361 * 181.45306 * 27 25 11 43 43 H 1.09000 * 109.47670 * 301.45626 * 27 25 11 44 44 H 1.08005 * 120.02214 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1906 1.2093 0.0000 4 6 3.5585 1.2290 0.0005 5 6 4.2615 0.0334 0.0016 6 16 5.9737 -0.3850 0.0020 7 7 5.8060 -1.9359 0.0027 8 6 4.5569 -2.2841 0.0022 9 6 4.1443 -3.6990 0.0021 10 8 2.9630 -3.9880 0.0011 11 7 5.0762 -4.6727 0.0031 12 6 6.5358 -4.4651 -0.0022 13 6 7.1211 -5.7622 -0.6085 14 6 6.1696 -6.8393 -0.0238 15 1 6.4774 -7.1198 0.9835 16 7 6.1173 -8.0141 -0.8974 17 6 6.9811 -9.0571 -0.6946 18 1 7.7006 -9.0139 0.1096 19 6 6.9319 -10.1702 -1.5228 20 7 6.0546 -10.2231 -2.5025 21 14 8.1098 -11.5933 -1.2457 22 1 8.9893 -11.2897 -0.0883 23 1 7.3355 -12.8299 -0.9688 24 1 8.9412 -11.7913 -2.4600 25 6 4.8056 -6.1178 0.0026 26 1 4.2245 -6.3858 -0.8797 27 6 4.0376 -6.5037 1.2683 28 6 3.5821 -1.1984 0.0016 29 6 2.1780 -1.1867 0.0056 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6397 2.1381 -0.0004 34 1 4.0880 2.1703 0.0001 35 1 6.7945 -3.6060 -0.6212 36 1 6.9028 -4.3252 1.0146 37 1 8.1461 -5.9237 -0.2749 38 1 7.0649 -5.7407 -1.6969 39 1 5.4709 -8.0531 -1.6195 40 1 6.0205 -11.0007 -3.0814 41 1 3.0814 -5.9806 1.2868 42 1 3.8631 -7.5797 1.2736 43 1 4.6208 -6.2259 2.1463 44 1 1.6299 -2.1173 0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986663092.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:12 Heat of formation + Delta-G solvation = 40.453290 kcal Electronic energy + Delta-G solvation = -27365.309634 eV Core-core repulsion = 23602.448295 eV Total energy + Delta-G solvation = -3762.861339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.86250 -39.59434 -37.65297 -37.06313 -34.13185 -32.90999 -31.66874 -31.02132 -30.89000 -29.21545 -27.36171 -26.09085 -25.17612 -23.58417 -22.91428 -22.37079 -21.28175 -20.06544 -19.16672 -18.67886 -17.33060 -17.06894 -16.41652 -16.06626 -15.60022 -15.41969 -14.92265 -14.64637 -14.41708 -14.12981 -13.90090 -13.64123 -13.60918 -13.33283 -13.01066 -12.76917 -12.56144 -12.30335 -12.13440 -12.10749 -12.01339 -11.83383 -11.68713 -11.29133 -11.03257 -10.99086 -10.93741 -10.75414 -10.56778 -10.19952 -10.00074 -9.95656 -9.78384 -9.68139 -9.23831 -8.93984 -8.46372 -8.05376 -7.03277 -5.81922 -3.12163 0.11948 0.78578 1.08955 1.43492 1.55908 3.01637 3.02856 3.40831 3.41456 3.46646 3.48854 4.03176 4.31636 4.47634 4.54720 4.71080 4.83655 5.00790 5.08440 5.12896 5.25643 5.27128 5.32487 5.41738 5.58420 5.61419 5.64608 5.68982 5.73960 5.74573 5.81637 5.86431 5.99057 6.08616 6.10150 6.18735 6.24757 6.35318 6.46911 6.51546 6.60903 6.63025 6.72331 6.93064 7.65669 7.67174 8.18677 8.35362 9.46981 10.01203 10.36203 11.40338 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.002478 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.516737 B =11296.174652 C =12178.386398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.089 4.089 4 C -0.072 4.072 5 C -0.203 4.203 6 S 0.368 5.632 7 N -0.477 5.477 8 C 0.099 3.901 9 C 0.597 3.403 10 O -0.531 6.531 11 N -0.585 5.585 12 C 0.102 3.898 13 C -0.158 4.158 14 C 0.177 3.823 15 H 0.069 0.931 16 N -0.714 5.714 17 C -0.242 4.242 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.125 3.875 26 H 0.081 0.919 27 C -0.154 4.154 28 C -0.082 4.082 29 C -0.042 4.042 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 26.519 6.545 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.112 4.112 4 C -0.094 4.094 5 C -0.324 4.324 6 S 0.527 5.473 7 N -0.303 5.303 8 C -0.089 4.089 9 C 0.380 3.620 10 O -0.408 6.408 11 N -0.318 5.318 12 C -0.022 4.022 13 C -0.199 4.199 14 C 0.065 3.935 15 H 0.086 0.914 16 N -0.354 5.354 17 C -0.373 4.373 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.022 3.978 26 H 0.099 0.901 27 C -0.212 4.212 28 C -0.093 4.093 29 C -0.065 4.065 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.408 26.412 6.604 27.580 hybrid contribution -1.098 -1.164 -0.226 1.616 sum -5.506 25.248 6.378 26.617 Atomic orbital electron populations 1.20839 0.90313 1.03218 1.02797 1.19659 0.96825 0.92569 0.99862 1.20947 0.93648 0.97946 0.98679 1.19896 0.93759 0.95233 1.00474 1.24242 1.01580 0.97700 1.08838 1.81477 1.02615 0.95719 1.67445 1.71892 1.23347 1.15608 1.19417 1.21935 0.86489 0.95898 1.04587 1.16740 0.84975 0.82170 0.78137 1.90756 1.16275 1.82193 1.51559 1.48388 1.07331 1.06452 1.69600 1.22575 0.78774 0.99655 1.01188 1.23586 1.00561 0.94326 1.01477 1.21247 0.89837 0.87202 0.95171 0.91356 1.42354 1.42415 1.15492 1.35124 1.19260 1.11191 0.94982 1.11903 0.90917 1.24772 0.99309 0.98560 0.98073 1.69674 1.37554 1.30349 1.20155 0.86108 0.80165 0.82535 0.77295 1.20489 1.21808 1.21846 1.22067 0.98774 0.77728 0.99233 0.90109 1.22049 1.00377 1.02376 0.96427 1.19556 0.95110 0.89811 1.04816 1.20710 0.90835 0.99190 0.95723 0.90772 0.90981 0.91293 0.84868 0.84844 0.89294 0.91794 0.90489 0.90795 0.77975 0.93424 0.91918 0.90893 0.93065 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 9.98 36.01 0.36 -0.39 16 2 C -0.09 -0.79 5.84 -105.06 -0.61 -1.41 16 3 C -0.09 -0.68 9.63 -39.85 -0.38 -1.06 16 4 C -0.07 -0.59 10.03 -39.93 -0.40 -0.99 16 5 C -0.20 -2.20 6.73 -38.49 -0.26 -2.46 16 6 S 0.37 3.80 23.36 -107.50 -2.51 1.29 16 7 N -0.48 -6.45 7.68 28.24 0.22 -6.23 16 8 C 0.10 1.47 6.77 -81.99 -0.56 0.91 16 9 C 0.60 10.16 7.63 -12.54 -0.10 10.07 16 10 O -0.53 -9.86 14.05 5.26 0.07 -9.78 16 11 N -0.59 -9.90 3.07 -164.42 -0.50 -10.41 16 12 C 0.10 1.56 5.99 -2.65 -0.02 1.55 16 13 C -0.16 -2.75 6.76 -24.70 -0.17 -2.92 16 14 C 0.18 3.48 3.14 -66.10 -0.21 3.27 16 15 H 0.07 1.34 7.80 -51.93 -0.41 0.93 16 16 N -0.71 -17.48 5.22 -51.65 -0.27 -17.75 16 17 C -0.24 -6.53 9.96 -15.06 -0.15 -6.68 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 21 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.13 2.29 3.21 -66.95 -0.21 2.08 16 26 H 0.08 1.63 7.72 -51.93 -0.40 1.23 16 27 C -0.15 -2.62 9.10 37.16 0.34 -2.28 16 28 C -0.08 -1.09 6.10 -105.09 -0.64 -1.73 16 29 C -0.04 -0.51 9.17 -39.45 -0.36 -0.87 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.09 1.33 6.02 -51.93 -0.31 1.01 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.39 10.18 7.57 -40.82 -0.31 9.87 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.06 1.08 6.88 -51.92 -0.36 0.72 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.15 1.90 6.64 -52.48 -0.35 1.56 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -31.26 372.73 -11.04 -42.30 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.90 Total: 8.24 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -3.46 Total: -3.30 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.17 Total: -61.40 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -2.51 Total: 1.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.26 -11.04 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986663092.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.754 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds