Wall clock time and date at job start Wed Apr 1 2020 03:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38909 * 119.47819 * 2 1 4 4 C 1.36802 * 120.30387 * 179.97438 * 3 2 1 5 5 C 1.38696 * 119.62937 * 359.97438 * 4 3 2 6 6 S 1.76256 * 134.18582 * 179.97438 * 5 4 3 7 7 N 1.55993 * 97.56135 * 180.02562 * 6 5 4 8 8 C 1.29681 * 111.74673 * 0.02562 * 7 6 5 9 9 C 1.47382 * 121.83158 * 179.97438 * 8 7 6 10 10 O 1.21622 * 120.00128 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00120 * 0.02562 * 9 8 7 12 12 C 1.47426 * 125.64780 * 359.68845 * 11 9 8 13 13 C 1.54689 * 104.94418 * 204.07576 * 12 11 9 14 14 C 1.55155 * 101.67498 * 323.27833 * 13 12 11 15 15 H 1.08998 * 110.71947 * 276.96810 * 14 13 12 16 16 N 1.46500 * 110.72140 * 153.69887 * 14 13 12 17 17 C 1.36936 * 119.99950 * 91.47270 * 16 14 13 18 18 H 1.07989 * 120.00400 * 0.02562 * 17 16 14 19 19 C 1.38824 * 119.99659 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99658 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47029 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46942 * 120.00209 * 21 19 17 24 24 H 1.48493 * 109.47050 * 240.00014 * 21 19 17 25 25 C 1.47020 * 125.64949 * 180.02562 * 11 9 8 26 26 H 1.08997 * 109.88354 * 59.32851 * 25 11 9 27 27 C 1.52999 * 109.88092 * 298.31509 * 25 11 9 28 28 C 1.40673 * 120.66789 * 0.02562 * 5 4 3 29 29 C 1.36324 * 119.48334 * 179.72740 * 2 1 3 30 30 H 1.08999 * 109.47015 * 90.00341 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99493 * 1 2 3 32 32 H 1.09000 * 109.47248 * 330.00211 * 1 2 3 33 33 H 1.07994 * 119.84733 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.18377 * 179.97438 * 4 3 2 35 35 H 1.09002 * 110.36783 * 323.01034 * 12 11 9 36 36 H 1.09000 * 110.36686 * 85.32627 * 12 11 9 37 37 H 1.09002 * 111.10394 * 205.10785 * 13 12 11 38 38 H 1.09006 * 110.81350 * 81.32334 * 13 12 11 39 39 H 0.96999 * 119.99883 * 271.48217 * 16 14 13 40 40 H 0.96998 * 119.99663 * 179.97438 * 20 19 17 41 41 H 1.09007 * 109.47044 * 61.45781 * 27 25 11 42 42 H 1.09004 * 109.47361 * 181.45306 * 27 25 11 43 43 H 1.09000 * 109.47670 * 301.45626 * 27 25 11 44 44 H 1.08005 * 120.02214 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1906 1.2093 0.0000 4 6 3.5585 1.2290 0.0005 5 6 4.2615 0.0334 0.0016 6 16 5.9737 -0.3850 0.0020 7 7 5.8060 -1.9359 0.0027 8 6 4.5569 -2.2841 0.0022 9 6 4.1443 -3.6990 0.0021 10 8 2.9630 -3.9880 0.0011 11 7 5.0762 -4.6727 0.0031 12 6 6.5358 -4.4651 -0.0022 13 6 7.1211 -5.7622 -0.6085 14 6 6.1696 -6.8393 -0.0238 15 1 6.4774 -7.1198 0.9835 16 7 6.1173 -8.0141 -0.8974 17 6 6.9811 -9.0571 -0.6946 18 1 7.7006 -9.0139 0.1096 19 6 6.9319 -10.1702 -1.5228 20 7 6.0546 -10.2231 -2.5025 21 14 8.1098 -11.5933 -1.2457 22 1 8.9893 -11.2897 -0.0883 23 1 7.3355 -12.8299 -0.9688 24 1 8.9412 -11.7913 -2.4600 25 6 4.8056 -6.1178 0.0026 26 1 4.2245 -6.3858 -0.8797 27 6 4.0376 -6.5037 1.2683 28 6 3.5821 -1.1984 0.0016 29 6 2.1780 -1.1867 0.0056 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6397 2.1381 -0.0004 34 1 4.0880 2.1703 0.0001 35 1 6.7945 -3.6060 -0.6212 36 1 6.9028 -4.3252 1.0146 37 1 8.1461 -5.9237 -0.2749 38 1 7.0649 -5.7407 -1.6969 39 1 5.4709 -8.0531 -1.6195 40 1 6.0205 -11.0007 -3.0814 41 1 3.0814 -5.9806 1.2868 42 1 3.8631 -7.5797 1.2736 43 1 4.6208 -6.2259 2.1463 44 1 1.6299 -2.1173 0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986663092.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:11 Heat of formation + Delta-G solvation = 22.434979 kcal Electronic energy + Delta-G solvation = -27366.090967 eV Core-core repulsion = 23602.448295 eV Total energy + Delta-G solvation = -3763.642671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.92141 -40.69520 -38.88899 -38.16436 -35.95796 -33.70040 -33.30057 -32.33931 -31.86708 -30.91456 -28.01455 -27.25702 -26.83134 -24.96544 -24.24261 -23.46419 -22.24163 -21.53692 -20.41879 -19.62108 -19.18020 -18.23835 -17.61295 -17.15273 -16.70662 -16.51414 -16.34320 -15.90561 -15.50565 -15.26882 -15.24911 -14.88401 -14.72222 -14.59295 -14.36634 -14.24384 -13.64075 -13.39061 -13.22611 -13.14009 -13.01356 -12.98567 -12.80683 -12.78154 -12.62446 -12.53564 -12.19172 -12.18575 -12.03039 -11.74660 -11.74152 -11.51578 -11.05372 -10.86308 -10.77437 -9.97191 -9.81245 -9.05454 -8.86969 -7.95365 -5.25759 -0.80206 0.00733 0.28114 0.54724 0.62366 1.48662 1.49216 1.59293 1.75420 1.90939 2.55983 2.58043 3.12850 3.31331 3.39810 3.66642 3.69616 3.81931 3.92127 3.99166 4.14314 4.21165 4.28824 4.34686 4.35871 4.38224 4.47936 4.62098 4.71632 4.74478 4.79531 4.85531 4.91607 4.98065 4.99751 5.12113 5.16095 5.16858 5.18504 5.25489 5.32663 5.38296 5.53160 5.56519 5.84037 6.24468 6.35093 6.88079 7.31254 8.01529 8.26576 9.28318 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.002478 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.516737 B =11296.174652 C =12178.386398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.082 4.082 4 C -0.065 4.065 5 C -0.217 4.217 6 S 0.434 5.566 7 N -0.497 5.497 8 C 0.069 3.931 9 C 0.592 3.408 10 O -0.558 6.558 11 N -0.590 5.590 12 C 0.114 3.886 13 C -0.148 4.148 14 C 0.174 3.826 15 H 0.075 0.925 16 N -0.727 5.727 17 C -0.236 4.236 18 H 0.083 0.917 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.974 3.026 22 H -0.262 1.262 23 H -0.296 1.296 24 H -0.296 1.296 25 C 0.132 3.868 26 H 0.052 0.948 27 C -0.143 4.143 28 C -0.106 4.106 29 C -0.076 4.076 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 30.207 7.883 31.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.105 4.105 4 C -0.086 4.086 5 C -0.338 4.338 6 S 0.595 5.405 7 N -0.325 5.325 8 C -0.117 4.117 9 C 0.377 3.623 10 O -0.437 6.437 11 N -0.323 5.323 12 C -0.009 4.009 13 C -0.189 4.189 14 C 0.064 3.936 15 H 0.093 0.907 16 N -0.366 5.366 17 C -0.368 4.368 18 H 0.101 0.899 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.803 3.197 22 H -0.186 1.186 23 H -0.223 1.223 24 H -0.223 1.223 25 C 0.027 3.973 26 H 0.070 0.930 27 C -0.201 4.201 28 C -0.116 4.116 29 C -0.098 4.098 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.192 0.808 34 H 0.189 0.811 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.432 30.151 7.986 31.379 hybrid contribution -1.440 -2.059 -0.618 2.588 sum -4.872 28.092 7.368 29.448 Atomic orbital electron populations 1.20918 0.88632 1.04117 1.03539 1.20017 0.98148 0.92241 0.97772 1.21423 0.93707 0.98643 0.96698 1.20431 0.94204 0.95561 0.98453 1.24511 1.01786 0.97863 1.09590 1.81098 1.01653 0.92883 1.64855 1.71521 1.23187 1.18606 1.19204 1.21607 0.87434 0.94754 1.07931 1.17180 0.84581 0.83319 0.77252 1.90727 1.17356 1.82985 1.52586 1.48407 1.08086 1.05663 1.70096 1.22550 0.77614 0.98583 1.02129 1.23413 1.00778 0.94472 1.00280 1.21396 0.91134 0.86371 0.94656 0.90659 1.42506 1.41875 1.16663 1.35524 1.19660 1.10750 0.95174 1.11199 0.89868 1.25593 1.01386 1.01388 0.98412 1.69840 1.39797 1.30933 1.21559 0.85061 0.78162 0.79068 0.77377 1.18606 1.22325 1.22293 1.21793 0.97770 0.79025 0.98668 0.92958 1.21936 1.00150 1.01676 0.96372 1.19642 0.95547 0.90316 1.06136 1.20678 0.90760 0.99640 0.98744 0.89992 0.91825 0.88682 0.80829 0.81142 0.88446 0.90022 0.89085 0.92691 0.79617 0.94067 0.92521 0.91669 0.91516 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.98 71.24 0.71 -0.58 16 2 C -0.08 -1.32 5.84 -20.15 -0.12 -1.44 16 3 C -0.08 -0.92 9.63 22.09 0.21 -0.70 16 4 C -0.06 -0.81 10.03 22.04 0.22 -0.59 16 5 C -0.22 -4.22 6.73 22.97 0.15 -4.07 16 6 S 0.43 7.95 23.36 -56.49 -1.32 6.63 16 7 N -0.50 -12.97 7.68 -64.58 -0.50 -13.47 16 8 C 0.07 2.08 6.77 43.86 0.30 2.38 16 9 C 0.59 21.07 7.63 86.65 0.66 21.73 16 10 O -0.56 -22.19 14.05 -4.10 -0.06 -22.25 16 11 N -0.59 -20.51 3.07 -792.37 -2.43 -22.94 16 12 C 0.11 3.44 5.99 86.78 0.52 3.96 16 13 C -0.15 -5.14 6.76 31.91 0.22 -4.92 16 14 C 0.17 6.94 3.14 46.18 0.15 7.08 16 15 H 0.08 2.91 7.80 -2.39 -0.02 2.89 16 16 N -0.73 -36.60 5.22 -317.33 -1.66 -38.25 16 17 C -0.24 -12.83 9.96 84.04 0.84 -11.99 16 18 H 0.08 4.27 7.83 -2.92 -0.02 4.24 16 19 C -0.08 -4.31 5.50 84.87 0.47 -3.84 16 20 N -0.97 -59.78 13.06 21.65 0.28 -59.49 16 21 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 25 C 0.13 5.02 3.21 45.34 0.15 5.16 16 26 H 0.05 2.28 7.72 -2.39 -0.02 2.26 16 27 C -0.14 -5.03 9.10 71.98 0.66 -4.37 16 28 C -0.11 -2.81 6.10 -20.17 -0.12 -2.93 16 29 C -0.08 -1.86 9.17 22.35 0.21 -1.65 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.82 8.07 -2.39 -0.02 0.80 16 32 H 0.09 0.57 8.08 -2.39 -0.02 0.55 16 33 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 35 H 0.10 2.83 6.02 -2.39 -0.01 2.81 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.05 2.11 8.14 -2.38 -0.02 2.10 16 39 H 0.37 20.62 7.57 -92.71 -0.70 19.92 16 40 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.06 2.04 6.88 -2.38 -0.02 2.03 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.12 3.53 6.64 -2.91 -0.02 3.51 16 Total: -1.00 -70.96 372.73 1.89 -69.06 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.34 Total: 29.61 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 5.21 Total: 3.23 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -4.30 Total: -134.15 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.06 Total: -22.25 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: 7.95 SS G_CDS: -1.32 Total: 6.63 kcal Total: -70.96 1.89 -69.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986663092.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.497 kcal (2) G-P(sol) polarization free energy of solvation -70.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds