Wall clock time and date at job start Wed Apr 1 2020 03:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28062 * 124.23954 * 2 1 4 4 C 1.34413 * 117.91715 * 179.97438 * 3 2 1 5 5 C 1.41241 * 129.48021 * 179.97438 * 4 3 2 6 6 C 1.35753 * 120.63180 * 179.71007 * 5 4 3 7 7 C 1.40193 * 120.61408 * 0.57424 * 6 5 4 8 8 C 1.47589 * 120.12610 * 179.70603 * 7 6 5 9 9 O 1.21592 * 119.99938 * 27.19156 * 8 7 6 10 10 N 1.34779 * 120.00176 * 207.19335 * 8 7 6 11 11 C 1.47421 * 125.64633 * 356.21050 * 10 8 7 12 12 C 1.54912 * 104.83060 * 155.91216 * 11 10 8 13 13 C 1.55158 * 101.58221 * 37.00928 * 12 11 10 14 14 H 1.09006 * 110.71952 * 83.04028 * 13 12 11 15 15 N 1.46491 * 110.72122 * 206.13217 * 13 12 11 16 16 C 1.36935 * 120.00393 * 271.16094 * 15 13 12 17 17 H 1.07999 * 120.00125 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00240 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00026 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00041 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47140 * 60.00480 * 20 18 16 22 22 H 1.48502 * 109.47186 * 300.00114 * 20 18 16 23 23 H 1.48503 * 109.46864 * 179.97438 * 20 18 16 24 24 C 1.47314 * 125.61483 * 176.44134 * 10 8 7 25 25 H 1.08999 * 110.06789 * 61.67781 * 24 10 8 26 26 C 1.53001 * 109.85372 * 300.41525 * 24 10 8 27 27 C 1.39183 * 119.75055 * 359.42981 * 7 6 5 28 28 C 1.38905 * 119.84324 * 0.27690 * 27 7 6 29 29 S 1.70641 * 124.24382 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47212 * 270.04256 * 1 2 3 31 31 H 1.08995 * 109.47267 * 30.04890 * 1 2 3 32 32 H 1.09000 * 109.46588 * 150.04321 * 1 2 3 33 33 H 1.07999 * 119.68573 * 0.02562 * 5 4 3 34 34 H 1.08005 * 119.69664 * 180.27942 * 6 5 4 35 35 H 1.08998 * 110.36770 * 37.07288 * 11 10 8 36 36 H 1.08999 * 110.37061 * 274.74783 * 11 10 8 37 37 H 1.08996 * 111.00643 * 278.93803 * 12 11 10 38 38 H 1.09004 * 111.00260 * 155.08425 * 12 11 10 39 39 H 0.97002 * 120.00039 * 91.16001 * 15 13 12 40 40 H 0.97000 * 120.00308 * 359.97438 * 19 18 16 41 41 H 1.09004 * 109.46504 * 302.39873 * 26 24 10 42 42 H 1.09000 * 109.46886 * 62.39045 * 26 24 10 43 43 H 1.08998 * 109.47325 * 182.40129 * 26 24 10 44 44 H 1.07996 * 120.07533 * 180.25927 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0587 0.0000 4 6 3.5635 0.9107 0.0005 5 6 4.5761 1.8953 0.0002 6 6 5.8863 1.5401 0.0067 7 6 6.2597 0.1888 0.0019 8 6 7.6874 -0.1853 0.0026 9 8 8.5122 0.5648 0.4881 10 7 8.0770 -1.3582 -0.5349 11 6 7.1804 -2.3921 -1.0831 12 6 8.0550 -3.1834 -2.0874 13 6 9.4265 -3.1981 -1.3620 14 1 9.4655 -4.0023 -0.6272 15 7 10.5216 -3.3265 -2.3265 16 6 10.9577 -4.5677 -2.7062 17 1 10.4946 -5.4522 -2.2942 18 6 11.9951 -4.6893 -3.6205 19 7 12.5598 -3.6115 -4.1222 20 14 12.5905 -6.3826 -4.1378 21 1 11.4711 -7.1310 -4.7638 22 1 13.0750 -7.1228 -2.9450 23 1 13.6984 -6.2401 -5.1164 24 6 9.4694 -1.8209 -0.6671 25 1 9.9268 -1.9167 0.3177 26 6 10.2666 -0.8322 -1.5203 27 6 5.2789 -0.7988 0.0023 28 6 3.9369 -0.4402 0.0017 29 16 2.4672 -1.4106 0.0006 30 1 -0.3633 0.0008 1.0276 31 1 -0.3633 0.8895 -0.5146 32 1 -0.3632 -0.8904 -0.5132 33 1 4.3055 2.9408 -0.0002 34 1 6.6483 2.3055 0.0109 35 1 6.3374 -1.9296 -1.5964 36 1 6.8276 -3.0488 -0.2879 37 1 8.1234 -2.6614 -3.0418 38 1 7.6743 -4.1956 -2.2240 39 1 10.9378 -2.5321 -2.6963 40 1 12.2510 -2.7322 -3.8533 41 1 9.7911 -0.7283 -2.4956 42 1 10.2927 0.1377 -1.0235 43 1 11.2839 -1.2018 -1.6496 44 1 5.5606 -1.8413 0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987317692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:34 Heat of formation + Delta-G solvation = 35.034334 kcal Electronic energy + Delta-G solvation = -27295.906956 eV Core-core repulsion = 23532.810634 eV Total energy + Delta-G solvation = -3763.096322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.02788 -41.08576 -39.19141 -37.87560 -36.33979 -33.87038 -32.66464 -32.49589 -32.06115 -30.58960 -29.27837 -26.85207 -25.81179 -25.16267 -24.86379 -23.38234 -22.32573 -21.46101 -20.44514 -19.54567 -19.33745 -18.73034 -17.50377 -17.12967 -17.00412 -16.55775 -16.42057 -16.23048 -15.84108 -15.50236 -15.39074 -14.92405 -14.62833 -14.37598 -14.26694 -14.05585 -13.98429 -13.82861 -13.70176 -13.36865 -13.27225 -13.09946 -12.88352 -12.63716 -12.52027 -12.38071 -12.07772 -11.93158 -11.81314 -11.72620 -11.32241 -11.26253 -11.13542 -10.90927 -10.74959 -9.94179 -9.71828 -9.26587 -9.12406 -8.36759 -5.32303 -1.00345 -0.04431 0.09541 0.56080 0.83236 1.60404 1.63264 1.70688 1.79574 1.86458 2.53398 2.73472 2.77486 3.17781 3.35776 3.40795 3.58029 3.68892 3.78534 3.84995 3.93249 4.02313 4.06324 4.18001 4.22799 4.25224 4.38868 4.47980 4.54173 4.56778 4.61828 4.65262 4.71147 4.81014 4.89562 4.92343 5.02775 5.07912 5.11659 5.13468 5.20350 5.36366 5.42202 5.63092 6.33742 6.47008 6.50525 6.90731 7.08765 7.99017 8.10565 9.14412 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.002444 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.521223 B =11454.504182 C =12582.985571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.097 3.903 3 N -0.504 5.504 4 C 0.094 3.906 5 C -0.075 4.075 6 C -0.057 4.057 7 C -0.125 4.125 8 C 0.573 3.427 9 O -0.570 6.570 10 N -0.601 5.601 11 C 0.094 3.906 12 C -0.144 4.144 13 C 0.172 3.828 14 H 0.070 0.930 15 N -0.743 5.743 16 C -0.326 4.326 17 H 0.074 0.926 18 C -0.106 4.106 19 N -0.977 5.977 20 Si 1.128 2.872 21 H -0.275 1.275 22 H -0.278 1.278 23 H -0.298 1.298 24 C 0.134 3.866 25 H 0.072 0.928 26 C -0.147 4.147 27 C -0.035 4.035 28 C -0.218 4.218 29 S 0.154 5.846 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.367 0.633 40 H 0.242 0.758 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.989 4.962 9.941 30.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.186 4.186 3 N -0.220 5.220 4 C -0.028 4.028 5 C -0.096 4.096 6 C -0.079 4.079 7 C -0.132 4.132 8 C 0.363 3.637 9 O -0.451 6.451 10 N -0.333 5.333 11 C -0.028 4.028 12 C -0.185 4.185 13 C 0.062 3.938 14 H 0.088 0.912 15 N -0.387 5.387 16 C -0.458 4.458 17 H 0.092 0.908 18 C -0.297 4.297 19 N -0.625 5.625 20 Si 0.953 3.047 21 H -0.201 1.201 22 H -0.204 1.204 23 H -0.225 1.225 24 C 0.030 3.970 25 H 0.090 0.910 26 C -0.205 4.205 27 C -0.058 4.058 28 C -0.337 4.337 29 S 0.411 5.589 30 H 0.128 0.872 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.175 0.825 34 H 0.165 0.835 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.203 0.797 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -27.163 3.815 9.367 28.985 hybrid contribution 0.317 2.140 0.690 2.271 sum -26.846 5.955 10.057 29.280 Atomic orbital electron populations 1.20844 0.81792 1.06081 1.05906 1.27649 1.03648 0.90631 0.96635 1.66241 1.03928 1.32539 1.19246 1.19617 0.89777 0.92304 1.01091 1.20442 0.89544 0.99614 1.00001 1.20786 0.96398 0.94869 0.95813 1.19694 0.91392 0.95083 1.07011 1.18084 0.88336 0.79787 0.77489 1.90766 1.54848 1.51776 1.47665 1.48548 1.08160 1.17585 1.59033 1.22924 0.93340 0.89362 0.97128 1.23383 0.96219 1.00954 0.97897 1.21321 0.88137 0.93310 0.91075 0.91178 1.42831 1.40052 1.05119 1.50714 1.20393 1.16205 0.86261 1.22913 0.90829 1.27169 0.96789 1.07929 0.97806 1.71002 1.45627 0.97835 1.48077 0.82624 0.75803 0.70268 0.76049 1.20120 1.20397 1.22481 1.21706 0.81766 0.94612 0.98918 0.91035 1.21849 0.99941 0.99305 0.99417 1.21154 0.88724 1.00972 0.94906 1.23968 0.99689 0.97517 1.12509 1.83852 0.93250 1.08942 1.72860 0.87227 0.88451 0.87234 0.82485 0.83532 0.88572 0.87898 0.92614 0.88916 0.79720 0.94745 0.93231 0.92076 0.92385 0.81847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.44 71.24 0.74 0.25 16 2 C 0.10 1.41 7.29 88.66 0.65 2.06 16 3 N -0.50 -10.39 10.56 -182.20 -1.92 -12.32 16 4 C 0.09 2.08 7.00 39.95 0.28 2.35 16 5 C -0.08 -1.57 10.03 22.43 0.23 -1.34 16 6 C -0.06 -1.30 9.49 22.17 0.21 -1.09 16 7 C -0.13 -3.14 5.70 -20.11 -0.11 -3.25 16 8 C 0.57 17.71 7.39 86.71 0.64 18.35 16 9 O -0.57 -21.46 15.69 -4.01 -0.06 -21.52 16 10 N -0.60 -17.72 3.09 -791.01 -2.44 -20.16 16 11 C 0.09 2.17 5.02 86.86 0.44 2.60 16 12 C -0.14 -4.34 6.77 31.99 0.22 -4.12 16 13 C 0.17 6.35 3.46 46.18 0.16 6.51 16 14 H 0.07 2.56 8.11 -2.38 -0.02 2.54 16 15 N -0.74 -35.67 4.98 -317.34 -1.58 -37.25 16 16 C -0.33 -17.45 9.97 84.03 0.84 -16.61 16 17 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 18 C -0.11 -6.00 5.50 84.86 0.47 -5.53 16 19 N -0.98 -60.59 13.70 21.65 0.30 -60.30 16 20 Si 1.13 50.62 29.92 68.60 2.05 52.67 16 21 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 24 C 0.13 4.67 3.48 45.29 0.16 4.83 16 25 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 26 C -0.15 -5.57 7.94 71.98 0.57 -5.00 16 27 C -0.04 -0.73 7.95 22.66 0.18 -0.55 16 28 C -0.22 -4.40 6.54 22.89 0.15 -4.26 16 29 S 0.15 2.15 23.11 -56.49 -1.31 0.84 16 30 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.15 3.25 7.87 -2.91 -0.02 3.22 16 35 H 0.10 1.90 6.17 -2.39 -0.01 1.89 16 36 H 0.10 1.78 7.29 -2.39 -0.02 1.76 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 39 H 0.37 18.65 3.82 -92.71 -0.35 18.30 16 40 H 0.24 15.04 6.77 -92.71 -0.63 14.41 16 41 H 0.05 1.90 8.06 -2.39 -0.02 1.89 16 42 H 0.06 2.31 6.89 -2.39 -0.02 2.29 16 43 H 0.06 2.40 6.72 -2.39 -0.02 2.39 16 44 H 0.16 2.75 4.57 -2.91 -0.01 2.74 16 Total: -1.00 -73.62 367.33 1.68 -71.94 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.84 Total: 30.88 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.81 Total: -4.79 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -5.65 Total: -130.02 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.05 Total: 52.67 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.31 Total: 0.84 kcal Total: -73.62 1.68 -71.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987317692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.971 kcal (2) G-P(sol) polarization free energy of solvation -73.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds