Wall clock time and date at job start Wed Apr 1 2020 03:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28054 * 124.24403 * 2 1 4 4 C 1.34413 * 117.91624 * 180.02562 * 3 2 1 5 5 C 1.41246 * 129.48561 * 179.97438 * 4 3 2 6 6 C 1.35750 * 120.63711 * 179.97438 * 5 4 3 7 7 C 1.40199 * 120.61680 * 0.04701 * 6 5 4 8 8 C 1.47588 * 120.12667 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99728 * 8.02208 * 8 7 6 10 10 N 1.34772 * 119.99711 * 188.01966 * 8 7 6 11 11 C 1.47018 * 125.65131 * 354.58868 * 10 8 7 12 12 C 1.54324 * 107.27086 * 178.97274 * 11 10 8 13 13 H 1.09004 * 110.71877 * 96.34878 * 12 11 10 14 14 N 1.46500 * 110.72545 * 219.44357 * 12 11 10 15 15 C 1.36936 * 119.99714 * 273.55304 * 14 12 11 16 16 H 1.07996 * 120.00476 * 359.97438 * 15 14 12 17 17 C 1.38821 * 119.99450 * 179.97438 * 15 14 12 18 18 N 1.31625 * 119.99571 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00032 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46940 * 90.00158 * 19 17 15 21 21 H 1.48497 * 109.47022 * 209.99630 * 19 17 15 22 22 H 1.48499 * 109.47317 * 330.00120 * 19 17 15 23 23 C 1.55160 * 102.94554 * 337.81232 * 12 11 10 24 24 C 1.47426 * 125.64412 * 174.62872 * 10 8 7 25 25 H 1.09005 * 110.36566 * 85.14679 * 24 10 8 26 26 C 1.52998 * 110.36908 * 322.93613 * 24 10 8 27 27 C 1.39176 * 119.74320 * 0.22850 * 7 6 5 28 28 C 1.38910 * 119.85169 * 359.47627 * 27 7 6 29 29 S 1.70651 * 124.23801 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47054 * 89.97110 * 1 2 3 31 31 H 1.08997 * 109.46911 * 209.97698 * 1 2 3 32 32 H 1.09001 * 109.46621 * 329.97366 * 1 2 3 33 33 H 1.08003 * 119.68027 * 0.02562 * 5 4 3 34 34 H 1.07997 * 119.68973 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.88233 * 59.55970 * 11 10 8 36 36 H 1.08993 * 110.01227 * 298.46347 * 11 10 8 37 37 H 0.96999 * 119.99782 * 93.54759 * 14 12 11 38 38 H 0.96999 * 119.99615 * 179.97438 * 18 17 15 39 39 H 1.08993 * 111.00455 * 153.57461 * 23 12 11 40 40 H 1.08994 * 110.99997 * 277.42359 * 23 12 11 41 41 H 1.08996 * 109.47422 * 61.45346 * 26 24 10 42 42 H 1.09000 * 109.47010 * 181.45346 * 26 24 10 43 43 H 1.09006 * 109.46923 * 301.44902 * 26 24 10 44 44 H 1.08002 * 120.07277 * 179.72342 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5636 0.9104 -0.0005 5 6 4.5764 1.8949 -0.0011 6 6 5.8866 1.5395 -0.0011 7 6 6.2598 0.1881 -0.0014 8 6 7.6875 -0.1860 -0.0020 9 8 8.5399 0.6684 0.1448 10 7 8.0462 -1.4749 -0.1651 11 6 7.1247 -2.6179 -0.2399 12 6 7.9811 -3.8836 -0.4552 13 1 8.1725 -4.3856 0.4932 14 7 7.3309 -4.7950 -1.4000 15 6 6.4115 -5.7051 -0.9508 16 1 6.1661 -5.7513 0.0999 17 6 5.7950 -6.5685 -1.8462 18 7 4.9117 -7.4436 -1.4144 19 14 6.2190 -6.4881 -3.6636 20 1 7.3544 -7.4022 -3.9479 21 1 5.0391 -6.9001 -4.4658 22 1 6.6005 -5.0985 -4.0220 23 6 9.2948 -3.3164 -1.0552 24 6 9.4278 -1.9720 -0.2973 25 1 9.8694 -2.1313 0.6865 26 6 10.2734 -0.9861 -1.1060 27 6 5.2789 -0.7991 -0.0066 28 6 3.9369 -0.4405 -0.0004 29 16 2.4672 -1.4108 -0.0006 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3632 0.8898 0.5143 33 1 4.3059 2.9405 -0.0008 34 1 6.6484 2.3049 -0.0012 35 1 6.4393 -2.4874 -1.0774 36 1 6.5619 -2.7048 0.6894 37 1 7.5515 -4.7538 -2.3436 38 1 4.4807 -8.0466 -2.0401 39 1 10.1381 -3.9721 -0.8389 40 1 9.1951 -3.1519 -2.1281 41 1 10.3113 -0.0287 -0.5866 42 1 11.2838 -1.3797 -1.2167 43 1 9.8275 -0.8478 -2.0910 44 1 5.5604 -1.8418 -0.0114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989643095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:56 Heat of formation + Delta-G solvation = 65.799826 kcal Electronic energy + Delta-G solvation = -27749.799118 eV Core-core repulsion = 23988.036888 eV Total energy + Delta-G solvation = -3761.762230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.89735 -39.90816 -37.73612 -36.78858 -34.43352 -32.75730 -31.70109 -31.64799 -30.65091 -29.09232 -28.43525 -25.96661 -24.58036 -23.90152 -22.92591 -22.08755 -20.81166 -20.60036 -19.58338 -18.21339 -17.79799 -17.25012 -16.63161 -15.96708 -15.43250 -15.32544 -15.19114 -14.70952 -14.36712 -14.19496 -14.01175 -13.59804 -13.49277 -13.41465 -13.23317 -13.00581 -12.72068 -12.64315 -12.32918 -12.24981 -12.15821 -11.96642 -11.63495 -11.47753 -11.26703 -11.03220 -10.80769 -10.56931 -10.46502 -10.26580 -10.18989 -9.76452 -9.73714 -9.65993 -9.09002 -8.77412 -8.48776 -8.22688 -7.49924 -5.93093 -3.32009 0.04319 1.05838 1.13080 1.63205 1.87995 2.94032 3.01111 3.26697 3.29722 3.36192 3.68666 3.71017 4.36177 4.44613 4.47597 4.74783 4.85905 4.91003 4.97242 5.04456 5.06050 5.16486 5.18396 5.27641 5.37895 5.40475 5.43748 5.58148 5.63236 5.65071 5.70129 5.79960 5.83686 5.90085 5.92885 6.02653 6.12014 6.21848 6.23389 6.32660 6.46222 6.52813 6.64470 7.45182 7.59458 7.80116 8.21096 8.25236 9.01304 9.73691 9.91187 11.24137 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.007865 B = 0.004694 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.217886 B = 5963.843284 C = 9017.473157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.086 3.914 3 N -0.478 5.478 4 C 0.105 3.895 5 C -0.081 4.081 6 C -0.053 4.053 7 C -0.119 4.119 8 C 0.576 3.424 9 O -0.542 6.542 10 N -0.603 5.603 11 C 0.059 3.941 12 C 0.176 3.824 13 H 0.078 0.922 14 N -0.737 5.737 15 C -0.259 4.259 16 H 0.093 0.907 17 C 0.014 3.986 18 N -0.926 5.926 19 Si 0.881 3.119 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.277 1.277 23 C -0.140 4.140 24 C 0.138 3.862 25 H 0.078 0.922 26 C -0.165 4.165 27 C -0.063 4.063 28 C -0.198 4.198 29 S 0.137 5.863 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.365 0.635 38 H 0.262 0.738 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 15.122 2.802 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.197 4.197 3 N -0.193 5.193 4 C -0.018 4.018 5 C -0.102 4.102 6 C -0.075 4.075 7 C -0.126 4.126 8 C 0.366 3.634 9 O -0.421 6.421 10 N -0.336 5.336 11 C -0.066 4.066 12 C 0.065 3.935 13 H 0.096 0.904 14 N -0.378 5.378 15 C -0.388 4.388 16 H 0.111 0.889 17 C -0.183 4.183 18 N -0.572 5.572 19 Si 0.711 3.289 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.179 4.179 24 C 0.035 3.965 25 H 0.096 0.904 26 C -0.222 4.222 27 C -0.084 4.084 28 C -0.316 4.316 29 S 0.394 5.606 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.199 0.801 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.885 14.864 3.018 15.284 hybrid contribution 0.556 0.586 -1.392 1.610 sum -1.329 15.450 1.626 15.592 Atomic orbital electron populations 1.20581 0.84782 1.04597 1.04384 1.26914 1.02049 0.91584 0.99186 1.66171 1.04079 1.31484 1.17602 1.19375 0.89185 0.91818 1.01375 1.20231 0.90119 0.98458 1.01353 1.20709 0.95751 0.95236 0.95784 1.19832 0.92745 0.93992 1.06023 1.17689 0.87762 0.81112 0.76814 1.90697 1.51537 1.48929 1.50964 1.48484 1.08777 1.05634 1.70726 1.23716 0.94282 0.87252 1.01393 1.21202 0.89340 0.88224 0.94767 0.90437 1.42746 1.49697 1.40141 1.05247 1.19056 1.14633 1.09649 0.95454 0.88898 1.24668 0.98358 0.97811 0.97458 1.69695 1.30110 1.23290 1.34071 0.86623 0.77867 0.77649 0.86802 1.20845 1.21554 1.20280 1.23190 0.99361 0.94923 1.00396 1.21882 0.81874 0.93567 0.99134 0.90390 1.22152 0.98901 1.00940 1.00252 1.22342 0.89087 1.03192 0.93806 1.23847 0.99235 0.96711 1.11852 1.84487 0.94830 1.08766 1.72470 0.89047 0.89499 0.89047 0.84414 0.83700 0.89917 0.90886 0.80144 0.92816 0.89582 0.90591 0.89739 0.92004 0.92785 0.80504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.44 36.01 0.38 -0.27 16 2 C 0.09 1.03 7.29 -13.85 -0.10 0.93 16 3 N -0.48 -6.72 10.56 -8.96 -0.09 -6.82 16 4 C 0.10 1.52 7.00 -84.87 -0.59 0.93 16 5 C -0.08 -1.03 10.03 -39.33 -0.39 -1.42 16 6 C -0.05 -0.70 9.49 -39.74 -0.38 -1.07 16 7 C -0.12 -1.76 5.87 -105.00 -0.62 -2.37 16 8 C 0.58 9.07 7.52 -12.45 -0.09 8.98 16 9 O -0.54 -9.33 14.19 5.29 0.08 -9.25 16 10 N -0.60 -8.99 3.24 -168.47 -0.55 -9.53 16 11 C 0.06 0.92 4.62 -3.07 -0.01 0.91 16 12 C 0.18 2.94 3.59 -66.09 -0.24 2.70 16 13 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 14 N -0.74 -15.46 4.98 -51.65 -0.26 -15.71 16 15 C -0.26 -6.58 10.46 -15.06 -0.16 -6.74 16 16 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 17 C 0.01 0.38 5.50 -17.42 -0.10 0.29 16 18 N -0.93 -27.21 13.97 55.49 0.78 -26.43 16 19 Si 0.88 20.68 27.73 -169.99 -4.71 15.97 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 23 C -0.14 -1.92 6.11 -24.58 -0.15 -2.07 16 24 C 0.14 1.85 3.74 -66.42 -0.25 1.60 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 C -0.16 -2.10 8.77 37.16 0.33 -1.77 16 27 C -0.06 -0.94 8.62 -38.98 -0.34 -1.28 16 28 C -0.20 -2.95 6.54 -38.61 -0.25 -3.20 16 29 S 0.14 1.82 23.11 -107.50 -2.48 -0.66 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.15 1.70 7.66 -52.49 -0.40 1.30 16 35 H 0.08 1.40 6.53 -51.93 -0.34 1.06 16 36 H 0.07 1.11 6.82 -51.93 -0.35 0.75 16 37 H 0.36 7.64 5.58 -40.82 -0.23 7.41 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 41 H 0.08 1.21 5.93 -51.93 -0.31 0.90 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.18 2.69 2.75 -57.99 -0.16 2.53 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -31.17 366.85 -10.28 -41.46 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -5.60 Total: 9.31 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.97 Total: -3.86 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.12 Total: -58.50 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.71 Total: 15.97 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.48 Total: -0.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.17 -10.28 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989643095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.256 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds